transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G77920 |
| fragaria_vesca | FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 |
| malus_domestica | MD08G1174200.v1.1 |
| prunus_persica | Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 |
| pyrus_communis | pycom08g14930 |
| rosa_chinensis | RchiOBHm_Chr7g0240401 |
| rosa_laevigata | RLG00000000680 |
| rosa_multiflora | Rmu_sc0002676.1_g000006 |
| rosa_roxburghii | Rroxscaffold_3G00220150 |
| rosa_rugosa | Rorug07G0335500 Rorug07G0335600 Rorug07G0335700 |
| rosa_samantha | Rh7AG489800 Rh7BG462800 Rh7CG506200 Rh7DG473800 |
| rosa_wichuraiana | Rw7G040980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 881 |
| Acc36I | ACCTGC | 1 cut(s) | 881 |
| AccB1I | GGYRCC | 2 cut(s) | 202, 413 |
| AccIII | TCCGGA | 2 cut(s) | 209, 630 |
| AciI | CCGC | 5 cut(s) | 298, 334, 394, 830, 980 |
| AclWI | GGATC | 3 cut(s) | 485, 928, 990 |
| AcsI | RAATTY | 3 cut(s) | 469, 871, 912 |
| AcuI | CTGAAG | 2 cut(s) | 752, 848 |
| AfaI | GTAC | 2 cut(s) | 249, 439 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 637 |
| AgsI | TTSAA | 6 cut(s) | 141, 317, 368, 469, 515, 539 |
| AjnI | CCWGG | 2 cut(s) | 975, 1035 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 159, 191, 220, 252 |
| AluBI | AGCT | 9 cut(s) | 21, 120, 278, 374, 464, 742, 766, 862, 1043 |
| AluI | AGCT | 9 cut(s) | 21, 120, 278, 374, 464, 742, 766, 862, 1043 |
| Alw26I | GTCTC | 3 cut(s) | 825, 956, 1020 |
| AlwI | GGATC | 3 cut(s) | 485, 928, 990 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 647 |
| Ama87I | CYCGRG | 2 cut(s) | 1044, 1061 |
| Aor13HI | TCCGGA | 2 cut(s) | 209, 630 |
| AoxI | GGCC | 1 cut(s) | 973 |
| ApeKI | GCWGC | 7 cut(s) | 278, 397, 647, 994, 1006, 1040, 1081 |
| ApoI | RAATTY | 3 cut(s) | 469, 871, 912 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 582, 1071 |
| AspLEI | GCGC | 2 cut(s) | 258, 1060 |
| AspS9I | GGNCC | 1 cut(s) | 973 |
| AsuHPI | GGTGA | 5 cut(s) | 122, 905, 977, 1025, 1067 |
| AsuII | TTCGAA | 1 cut(s) | 586 |
| AvaI | CYCGRG | 2 cut(s) | 1044, 1061 |
| BaeGI | GKGCMC | 1 cut(s) | 1090 |
| BanI | GGYRCC | 2 cut(s) | 202, 413 |
| BauI | CACGAG | 1 cut(s) | 1116 |
| BbvI | GCAGC | 7 cut(s) | 265, 384, 634, 1006, 1018, 1052, 1068 |
| BccI | CCATC | 6 cut(s) | 34, 214, 487, 742, 922, 1119 |
| BceAI | ACGGC | 1 cut(s) | 55 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 998, 1032 |
| BciT130I | CCWGG | 2 cut(s) | 977, 1037 |
| BciVI | GTATCC | 1 cut(s) | 446 |
| BclI | TGATCA | 3 cut(s) | 112, 217, 895 |
| BcoDI | GTCTC | 3 cut(s) | 825, 956, 1020 |
| BfaI | CTAG | 3 cut(s) | 146, 323, 375 |
| BfmI | CTRYAG | 1 cut(s) | 1004 |
| BfoI | RGCGCY | 1 cut(s) | 259 |
| BfuAI | ACCTGC | 1 cut(s) | 881 |
| BfuI | GTATCC | 1 cut(s) | 446 |
| BglII | AGATCT | 1 cut(s) | 233 |
| BisI | GCNGC | 9 cut(s) | 279, 334, 395, 398, 648, 995, 1007, 1041, 1082 |
| BlsI | GCNGC | 9 cut(s) | 280, 335, 396, 399, 649, 996, 1008, 1042, 1083 |
| Bme1390I | CCNGG | 2 cut(s) | 977, 1037 |
| BmeT110I | CYCGRG | 2 cut(s) | 1044, 1061 |
| BmgT120I | GGNCC | 1 cut(s) | 973 |
| BmiI | GGNNCC | 3 cut(s) | 204, 415, 568 |
| BmrFI | CCNGG | 2 cut(s) | 977, 1037 |
| BmsI | GCATC | 4 cut(s) | 145, 634, 649, 826 |
| BpmI | CTGGAG | 2 cut(s) | 374, 980 |
| Bpu14I | TTCGAA | 1 cut(s) | 586 |
| BpuEI | CTTGAG | 3 cut(s) | 31, 628, 829 |
| BsaI | GGTCTC | 1 cut(s) | 956 |
| BsaJI | CCNNGG | 1 cut(s) | 198 |
| BsaWI | WCCGGW | 2 cut(s) | 209, 630 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 637 |
| Bse118I | RCCGGY | 2 cut(s) | 390, 1077 |
| Bse1I | ACTGG | 5 cut(s) | 348, 357, 426, 719, 963 |
| Bse3DI | GCAATG | 1 cut(s) | 551 |
| BseAI | TCCGGA | 2 cut(s) | 209, 630 |
| BseBI | CCWGG | 2 cut(s) | 977, 1037 |
| BseDI | CCNNGG | 1 cut(s) | 198 |
| BseGI | GGATG | 5 cut(s) | 160, 206, 639, 784, 1111 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 637 |
| BseMI | GCAATG | 1 cut(s) | 551 |
| BseMII | CTCAG | 4 cut(s) | 556, 836, 938, 1105 |
| BseNI | ACTGG | 5 cut(s) | 348, 357, 426, 719, 963 |
| BseSI | GKGCMC | 1 cut(s) | 1090 |
| BseXI | GCAGC | 7 cut(s) | 265, 384, 634, 1006, 1018, 1052, 1068 |
| BseYI | CCCAGC | 1 cut(s) | 158 |
| BshFI | GGCC | 1 cut(s) | 975 |
| BshNI | GGYRCC | 2 cut(s) | 202, 413 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1044, 1061 |
| BsiSI | CCGG | 5 cut(s) | 210, 391, 631, 991, 1078 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 637 |
| BsmAI | GTCTC | 3 cut(s) | 825, 956, 1020 |
| BsmBI | CGTCTC | 1 cut(s) | 825 |
| BsnI | GGCC | 1 cut(s) | 975 |
| Bso31I | GGTCTC | 1 cut(s) | 956 |
| BsoBI | CYCGRG | 2 cut(s) | 1044, 1061 |
| Bsp119I | TTCGAA | 1 cut(s) | 586 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1090 |
| Bsp13I | TCCGGA | 2 cut(s) | 209, 630 |
| Bsp143I | GATC | 8 cut(s) | 112, 217, 233, 477, 559, 895, 920, 982 |
| BspACI | CCGC | 5 cut(s) | 298, 334, 394, 830, 980 |
| BspANI | GGCC | 1 cut(s) | 975 |
| BspCNI | CTCAG | 4 cut(s) | 555, 835, 937, 1104 |
| BspEI | TCCGGA | 2 cut(s) | 209, 630 |
| BspHI | TCATGA | 1 cut(s) | 190 |
| BspLI | GGNNCC | 3 cut(s) | 204, 415, 568 |
| BspMAI | CTGCAG | 1 cut(s) | 1008 |
| BspMI | ACCTGC | 1 cut(s) | 881 |
| BspPI | GGATC | 3 cut(s) | 485, 928, 990 |
| BspT104I | TTCGAA | 1 cut(s) | 586 |
| BspT107I | GGYRCC | 2 cut(s) | 202, 413 |
| BspTNI | GGTCTC | 1 cut(s) | 956 |
| BsrDI | GCAATG | 1 cut(s) | 551 |
| BsrFI | RCCGGY | 2 cut(s) | 390, 1077 |
| BsrI | ACTGG | 5 cut(s) | 348, 357, 426, 719, 963 |
| BssAI | RCCGGY | 2 cut(s) | 390, 1077 |
| BssECI | CCNNGG | 1 cut(s) | 198 |
| BssMI | GATC | 8 cut(s) | 112, 217, 233, 477, 559, 895, 920, 982 |
| BssSI | CACGAG | 1 cut(s) | 1116 |
| BssT1I | CCWWGG | 1 cut(s) | 198 |
| Bst2BI | CACGAG | 1 cut(s) | 1116 |
| Bst2UI | CCWGG | 2 cut(s) | 977, 1037 |
| Bst4CI | ACNGT | 1 cut(s) | 675 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 647, 1003 |
| BstBI | TTCGAA | 1 cut(s) | 586 |
| BstC8I | GCNNGC | 5 cut(s) | 283, 828, 1052, 1056, 1086 |
| BstDEI | CTNAG | 5 cut(s) | 259, 542, 822, 924, 1091 |
| BstF5I | GGATG | 5 cut(s) | 160, 206, 639, 784, 1111 |
| BstH2I | RGCGCY | 1 cut(s) | 259 |
| BstHHI | GCGC | 2 cut(s) | 258, 1060 |
| BstKTI | GATC | 8 cut(s) | 115, 220, 236, 480, 562, 898, 923, 985 |
| BstMAI | GTCTC | 3 cut(s) | 825, 956, 1020 |
| BstMBI | GATC | 8 cut(s) | 112, 217, 233, 477, 559, 895, 920, 982 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 406, 422, 647, 653, 836, 1003 |
| BstNI | CCWGG | 2 cut(s) | 977, 1037 |
| BstSCI | CCNGG | 2 cut(s) | 975, 1035 |
| BstSFI | CTRYAG | 1 cut(s) | 1004 |
| BstSLI | GKGCMC | 1 cut(s) | 1090 |
| BstV1I | GCAGC | 7 cut(s) | 265, 384, 634, 1006, 1018, 1052, 1068 |
| BstX2I | RGATCY | 2 cut(s) | 233, 920 |
| BstYI | RGATCY | 2 cut(s) | 233, 920 |
| BsuI | GTATCC | 1 cut(s) | 446 |
| BsuRI | GGCC | 1 cut(s) | 975 |
| BtsCI | GGATG | 5 cut(s) | 160, 206, 639, 784, 1111 |
| BtsIMutI | CAGTG | 3 cut(s) | 712, 910, 956 |
| BveI | ACCTGC | 1 cut(s) | 881 |
| Cac8I | GCNNGC | 5 cut(s) | 283, 828, 1052, 1056, 1086 |
| CaiI | CAGNNNCTG | 1 cut(s) | 647 |
| CciI | TCATGA | 1 cut(s) | 190 |
| CfoI | GCGC | 2 cut(s) | 258, 1060 |
| Cfr10I | RCCGGY | 2 cut(s) | 390, 1077 |
| Cfr13I | GGNCC | 1 cut(s) | 973 |
| Csp6I | GTAC | 2 cut(s) | 248, 438 |
| CviAII | CATG | 2 cut(s) | 191, 563 |
| CviQI | GTAC | 2 cut(s) | 248, 438 |
| DdeI | CTNAG | 5 cut(s) | 259, 542, 822, 924, 1091 |
| DpnI | GATC | 8 cut(s) | 114, 219, 235, 479, 561, 897, 922, 984 |
| DpnII | GATC | 8 cut(s) | 112, 217, 233, 477, 559, 895, 920, 982 |
| EciI | GGCGGA | 1 cut(s) | 995 |
| Eco130I | CCWWGG | 1 cut(s) | 198 |
| Eco31I | GGTCTC | 1 cut(s) | 956 |
| Eco57I | CTGAAG | 2 cut(s) | 752, 848 |
| Eco88I | CYCGRG | 2 cut(s) | 1044, 1061 |
| EcoRI | GAATTC | 1 cut(s) | 469 |
| EcoRII | CCWGG | 2 cut(s) | 975, 1035 |
| EcoT14I | CCWWGG | 1 cut(s) | 198 |
| EcoT22I | ATGCAT | 1 cut(s) | 553 |
| ErhI | CCWWGG | 1 cut(s) | 198 |
| Esp3I | CGTCTC | 1 cut(s) | 825 |
| FaeI | CATG | 2 cut(s) | 194, 566 |
| FatI | CATG | 2 cut(s) | 190, 562 |
| FauNDI | CATATG | 2 cut(s) | 447, 683 |
| FbaI | TGATCA | 3 cut(s) | 112, 217, 895 |
| Fnu4HI | GCNGC | 9 cut(s) | 279, 334, 395, 398, 648, 995, 1007, 1041, 1082 |
| FokI | GGATG | 5 cut(s) | 167, 193, 646, 791, 1098 |
| Fsp4HI | GCNGC | 9 cut(s) | 279, 334, 395, 398, 648, 995, 1007, 1041, 1082 |
| FspBI | CTAG | 3 cut(s) | 146, 323, 375 |
| GlaI | GCGC | 2 cut(s) | 257, 1059 |
| GluI | GCNGC | 9 cut(s) | 279, 334, 395, 398, 648, 995, 1007, 1041, 1082 |
| GsaI | CCCAGC | 1 cut(s) | 162 |
| GsuI | CTGGAG | 2 cut(s) | 374, 980 |
| HaeII | RGCGCY | 1 cut(s) | 259 |
| HaeIII | GGCC | 1 cut(s) | 975 |
| HapII | CCGG | 5 cut(s) | 210, 391, 631, 991, 1078 |
| HhaI | GCGC | 2 cut(s) | 258, 1060 |
| Hin1II | CATG | 2 cut(s) | 194, 566 |
| Hin6I | GCGC | 2 cut(s) | 256, 1058 |
| HinP1I | GCGC | 2 cut(s) | 256, 1058 |
| HincII | GTYRAC | 1 cut(s) | 882 |
| HindII | GTYRAC | 1 cut(s) | 882 |
| HindIII | AAGCTT | 1 cut(s) | 860 |
| HinfI | GANTC | 3 cut(s) | 194, 1020, 1030 |
| HpaII | CCGG | 5 cut(s) | 210, 391, 631, 991, 1078 |
| HphI | GGTGA | 5 cut(s) | 122, 905, 977, 1025, 1067 |
| Hpy166II | GTNNAC | 2 cut(s) | 882, 1121 |
| Hpy188I | TCNGA | 4 cut(s) | 241, 545, 739, 927 |
| Hpy188III | TCNNGA | 9 cut(s) | 48, 146, 191, 210, 221, 272, 631, 1017, 1118 |
| Hpy8I | GTNNAC | 2 cut(s) | 882, 1121 |
| HpyAV | CCTTC | 1 cut(s) | 631 |
| HpyCH4III | ACNGT | 1 cut(s) | 675 |
| HpyCH4V | TGCA | 6 cut(s) | 409, 551, 556, 650, 938, 1006 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 406, 422, 647, 653, 836, 1003 |
| HpyF3I | CTNAG | 5 cut(s) | 259, 542, 822, 924, 1091 |
| Hsp92II | CATG | 2 cut(s) | 194, 566 |
| HspAI | GCGC | 2 cut(s) | 256, 1058 |
| Kpn2I | TCCGGA | 2 cut(s) | 209, 630 |
| Ksp22I | TGATCA | 3 cut(s) | 112, 217, 895 |
| Kzo9I | GATC | 8 cut(s) | 112, 217, 233, 477, 559, 895, 920, 982 |
| LmnI | GCTCC | 2 cut(s) | 355, 461 |
| Lsp1109I | GCAGC | 7 cut(s) | 265, 384, 634, 1006, 1018, 1052, 1068 |
| LweI | GCATC | 4 cut(s) | 145, 634, 649, 826 |
| MaeI | CTAG | 3 cut(s) | 146, 323, 375 |
| MaeIII | GTNAC | 1 cut(s) | 3 |
| MalI | GATC | 8 cut(s) | 114, 219, 235, 479, 561, 897, 922, 984 |
| MboI | GATC | 8 cut(s) | 112, 217, 233, 477, 559, 895, 920, 982 |
| MboII | GAAGA | 5 cut(s) | 129, 228, 527, 575, 845 |
| MflI | RGATCY | 2 cut(s) | 233, 920 |
| MhlI | GDGCHC | 1 cut(s) | 1090 |
| MluCI | AATT | 5 cut(s) | 35, 141, 469, 871, 912 |
| MlyI | GAGTC | 1 cut(s) | 1024 |
| MmeI | TCCRAC | 1 cut(s) | 930 |
| MnlI | CCTC | 8 cut(s) | 55, 246, 716, 804, 998, 1040, 1100, 1125 |
| Mph1103I | ATGCAT | 1 cut(s) | 553 |
| MroI | TCCGGA | 2 cut(s) | 209, 630 |
| MroXI | GAANNNNTTC | 2 cut(s) | 582, 1071 |
| MseI | TTAA | 1 cut(s) | 338 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1116 |
| MspI | CCGG | 5 cut(s) | 210, 391, 631, 991, 1078 |
| MspR9I | CCNGG | 2 cut(s) | 977, 1037 |
| MvaI | CCWGG | 2 cut(s) | 977, 1037 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 406, 422, 647, 653, 836, 1003 |
| NdeI | CATATG | 2 cut(s) | 447, 683 |
| NdeII | GATC | 8 cut(s) | 112, 217, 233, 477, 559, 895, 920, 982 |
| NlaIII | CATG | 2 cut(s) | 194, 566 |
| NlaIV | GGNNCC | 3 cut(s) | 204, 415, 568 |
| NsiI | ATGCAT | 1 cut(s) | 553 |
| NspV | TTCGAA | 1 cut(s) | 586 |
| PaeR7I | CTCGAG | 1 cut(s) | 1044 |
| PagI | TCATGA | 1 cut(s) | 190 |
| PaqCI | CACCTGC | 1 cut(s) | 881 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 289 |
| PdmI | GAANNNNTTC | 2 cut(s) | 582, 1071 |
| PfeI | GAWTC | 2 cut(s) | 194, 1020 |
| PkrI | GCNGC | 9 cut(s) | 280, 335, 396, 399, 649, 996, 1008, 1042, 1083 |
| PleI | GAGTC | 1 cut(s) | 1024 |
| PpsI | GAGTC | 1 cut(s) | 1024 |
| Psp6I | CCWGG | 2 cut(s) | 975, 1035 |
| PspFI | CCCAGC | 1 cut(s) | 158 |
| PspGI | CCWGG | 2 cut(s) | 975, 1035 |
| PspN4I | GGNNCC | 3 cut(s) | 204, 415, 568 |
| PspPI | GGNCC | 1 cut(s) | 973 |
| PspXI | VCTCGAGB | 1 cut(s) | 1044 |
| PstI | CTGCAG | 1 cut(s) | 1008 |
| PstNI | CAGNNNCTG | 1 cut(s) | 647 |
| PsuI | RGATCY | 2 cut(s) | 233, 920 |
| RsaI | GTAC | 2 cut(s) | 249, 439 |
| RsaNI | GTAC | 2 cut(s) | 248, 438 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1116 |
| SaqAI | TTAA | 1 cut(s) | 338 |
| SatI | GCNGC | 9 cut(s) | 279, 334, 395, 398, 648, 995, 1007, 1041, 1082 |
| Sau3AI | GATC | 8 cut(s) | 112, 217, 233, 477, 559, 895, 920, 982 |
| Sau96I | GGNCC | 1 cut(s) | 973 |
| SchI | GAGTC | 1 cut(s) | 1024 |
| ScrFI | CCNGG | 2 cut(s) | 977, 1037 |
| SduI | GDGCHC | 1 cut(s) | 1090 |
| SfaNI | GCATC | 4 cut(s) | 145, 634, 649, 826 |
| SfcI | CTRYAG | 1 cut(s) | 1004 |
| Sfr274I | CTCGAG | 1 cut(s) | 1044 |
| SfuI | TTCGAA | 1 cut(s) | 586 |
| SlaI | CTCGAG | 1 cut(s) | 1044 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1116 |
| SmlI | CTYRAG | 4 cut(s) | 46, 607, 808, 1044 |
| SmoI | CTYRAG | 4 cut(s) | 46, 607, 808, 1044 |
| Sse9I | AATT | 5 cut(s) | 35, 141, 469, 871, 912 |
| SsiI | CCGC | 5 cut(s) | 298, 334, 394, 830, 980 |
| SspI | AATATT | 1 cut(s) | 751 |
| SspMI | CTAG | 3 cut(s) | 146, 323, 375 |
| StyD4I | CCNGG | 2 cut(s) | 975, 1035 |
| StyI | CCWWGG | 1 cut(s) | 198 |
| TaaI | ACNGT | 1 cut(s) | 675 |
| TaqI | TCGA | 4 cut(s) | 76, 586, 1018, 1045 |
| TasI | AATT | 5 cut(s) | 35, 141, 469, 871, 912 |
| TauI | GCSGC | 2 cut(s) | 336, 397 |
| TfiI | GAWTC | 2 cut(s) | 194, 1020 |
| Tru1I | TTAA | 1 cut(s) | 338 |
| Tru9I | TTAA | 1 cut(s) | 338 |
| TscAI | CASTG | 3 cut(s) | 719, 910, 963 |
| TseI | GCWGC | 7 cut(s) | 278, 397, 647, 994, 1006, 1040, 1081 |
| TspDTI | ATGAA | 4 cut(s) | 207, 420, 650, 795 |
| TspRI | CASTG | 3 cut(s) | 719, 910, 963 |
| XapI | RAATTY | 3 cut(s) | 469, 871, 912 |
| XbaI | TCTAGA | 1 cut(s) | 145 |
| XhoI | CTCGAG | 1 cut(s) | 1044 |
| XmnI | GAANNNNTTC | 2 cut(s) | 582, 1071 |
| XspI | CTAG | 3 cut(s) | 146, 323, 375 |
| Zsp2I | ATGCAT | 1 cut(s) | 553 |