Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002906

Physical Location & Seq

Genomic Coordinates Forward (+)

36809060 .. 36809823

Gene Structure 764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0335700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCGGCAGGAGAAATCAGGGGAGGAACGGATTGGCAGGGTGGCATGATGGCATTGTGGTTTTTCTCTCGAGGTTGGGACTGGTGGTGGCTCTATCTTTGGGTTAGATACTGGAGACTTGGATTCGAGATAGCCAACCTTGCAAGTTTCCGACTTCATATGGCGGTTTCCGGGAAGCTGGAGTTGACTCTGAGGGACAGGAAAACGGGACTAGTTGTTTTAATGTCGATGTTTTCTTGTTGTCAATGTAATGGGGAGATGCCCCTACTCATATACTGGCGGTTTTGGTATATGGAGTTGGACGGGAATAGTCTCTTCTTGAGGTTGGCTATAAGGATGTATCGGGACTCCTGGGATAGGTTGATTGTCTGTAGCCCGGAAGAAAGGGTGATTGTGGTTAGAGTTGAGCCCCTATCGGCTCATGGTATCTGTAACCGCTGGTTTTACATTAGGGGTATGAGTAGATCCTCTTCTCTATTTGGAGTAGTTGAGATTTTATGGAGTCGTCCCCATCGTTGTAATCTCTTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

177

Amino Acids

21.09

Weight (kDa)

9.05

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77920
fragaria_vesca	FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390
malus_domestica	MD08G1174200.v1.1
prunus_persica	Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1
pyrus_communis	pycom08g14930
rosa_chinensis	RchiOBHm_Chr7g0240401
rosa_laevigata	RLG00000000680
rosa_multiflora	Rmu_sc0002676.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220150
rosa_rugosa	Rorug07G0335500 Rorug07G0335600 Rorug07G0335700
rosa_samantha	Rh7AG489800 Rh7BG462800 Rh7CG506200 Rh7DG473800
rosa_wichuraiana	Rw7G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	5, 164, 280, 436
AclWI	GGATC	1 cut(s)	459
AfiI	CCNNNNNNNGG	1 cut(s)	357
AhlI	ACTAGT	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw26I	GTCTC	2 cut(s)	109, 317
AlwI	GGATC	1 cut(s)	459
Ama87I	CYCGRG	1 cut(s)	69
AsuC2I	CCSGG	2 cut(s)	172, 377
AsuHPI	GGTGA	1 cut(s)	400
AvaI	CYCGRG	1 cut(s)	69
BanII	GRGCYC	1 cut(s)	411
BarI	GAAGNNNNNNTAC	2 cut(s)	454, 486
BccI	CCATC	2 cut(s)	43, 519
BciT130I	CCWGG	1 cut(s)	352
BcnI	CCSGG	2 cut(s)	172, 377
BcoDI	GTCTC	2 cut(s)	109, 317
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	370
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	3 cut(s)	172, 352, 377
BmeT110I	CYCGRG	1 cut(s)	69
BmrFI	CCNGG	3 cut(s)	172, 352, 377
BmsI	GCATC	1 cut(s)	249
BpmI	CTGGAG	2 cut(s)	133, 200
BpuEI	CTTGAG	1 cut(s)	340
BpuMI	CCSGG	2 cut(s)	172, 377
BsaJI	CCNNGG	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse1I	ACTGG	3 cut(s)	86, 116, 281
BseBI	CCWGG	1 cut(s)	352
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	342
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	3 cut(s)	86, 116, 281
BsiHKCI	CYCGRG	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	171, 377
BslFI	GGGAC	5 cut(s)	92, 209, 222, 359, 492
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmAI	GTCTC	2 cut(s)	109, 317
BsmFI	GGGAC	5 cut(s)	92, 209, 222, 359, 492
BsoBI	CYCGRG	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	1 cut(s)	464
BspACI	CCGC	4 cut(s)	5, 164, 280, 436
BspCNI	CTCAG	1 cut(s)	183
BspPI	GGATC	1 cut(s)	459
BsrI	ACTGG	3 cut(s)	86, 116, 281
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	1 cut(s)	464
Bst2UI	CCWGG	1 cut(s)	352
Bst6I	CTCTTC	2 cut(s)	320, 475
BstDEI	CTNAG	1 cut(s)	191
BstENI	CCTNNNNNAGG	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	342
BstKTI	GATC	1 cut(s)	467
BstMAI	GTCTC	2 cut(s)	109, 317
BstMBI	GATC	1 cut(s)	464
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	3 cut(s)	170, 350, 375
BstSFI	CTRYAG	1 cut(s)	370
BstX2I	RGATCY	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	464
BtsCI	GGATG	1 cut(s)	342
CviAII	CATG	2 cut(s)	46, 422
CviJI	RGCY	7 cut(s)	91, 134, 178, 329, 375, 409, 419
CviKI_1	RGCY	7 cut(s)	91, 134, 178, 329, 375, 409, 419
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	1 cut(s)	466
DpnII	GATC	1 cut(s)	464
Eam1104I	CTCTTC	2 cut(s)	320, 475
EarI	CTCTTC	2 cut(s)	320, 475
Eco24I	GRGCYC	1 cut(s)	411
Eco88I	CYCGRG	1 cut(s)	69
EcoNI	CCTNNNNNAGG	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	411
FaeI	CATG	2 cut(s)	49, 425
FaqI	GGGAC	5 cut(s)	92, 209, 222, 359, 492
FatI	CATG	2 cut(s)	45, 421
FauNDI	CATATG	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	349
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	2 cut(s)	133, 200
HapII	CCGG	2 cut(s)	171, 377
Hin1II	CATG	2 cut(s)	49, 425
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	4 cut(s)	123, 187, 347, 502
HpaII	CCGG	2 cut(s)	171, 377
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	2 cut(s)	152, 192
Hpy188III	TCNNGA	4 cut(s)	69, 127, 319, 344
Hpy8I	GTNNAC	1 cut(s)	186
HpyCH4V	TGCA	1 cut(s)	143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	49, 425
Kzo9I	GATC	1 cut(s)	464
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	1 cut(s)	466
MboI	GATC	1 cut(s)	464
MboII	GAAGA	3 cut(s)	307, 392, 462
MflI	RGATCY	1 cut(s)	464
MhlI	GDGCHC	1 cut(s)	411
MlyI	GAGTC	3 cut(s)	181, 341, 511
MmeI	TCCRAC	2 cut(s)	175, 279
MnlI	CCTC	5 cut(s)	17, 65, 186, 315, 478
MseI	TTAA	2 cut(s)	221, 532
MspA1I	CMGCKG	1 cut(s)	438
MspI	CCGG	2 cut(s)	171, 377
MspR9I	CCNGG	3 cut(s)	172, 352, 377
MvaI	CCWGG	1 cut(s)	352
MwoI	GCNNNNNNNGC	1 cut(s)	140
NciI	CCSGG	2 cut(s)	172, 377
NdeI	CATATG	1 cut(s)	159
NdeII	GATC	1 cut(s)	464
NlaIII	CATG	2 cut(s)	49, 425
PaeR7I	CTCGAG	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	123
PfoI	TCCNGGA	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	3 cut(s)	181, 341, 510
PpsI	GAGTC	3 cut(s)	181, 341, 510
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	464
SaqAI	TTAA	2 cut(s)	221, 532
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	464
SchI	GAGTC	3 cut(s)	181, 341, 511
ScrFI	CCNGG	3 cut(s)	172, 352, 377
SduI	GDGCHC	1 cut(s)	411
SetI	ASST	5 cut(s)	76, 141, 180, 326, 362
SfaNI	GCATC	1 cut(s)	249
SfcI	CTRYAG	1 cut(s)	370
Sfr274I	CTCGAG	1 cut(s)	69
SlaI	CTCGAG	1 cut(s)	69
SmlI	CTYRAG	2 cut(s)	69, 319
SmoI	CTYRAG	2 cut(s)	69, 319
SpeI	ACTAGT	1 cut(s)	211
SsiI	CCGC	4 cut(s)	5, 164, 280, 436
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	3 cut(s)	170, 350, 375
TaqI	TCGA	3 cut(s)	70, 126, 227
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	123
Tru1I	TTAA	2 cut(s)	221, 532
Tru9I	TTAA	2 cut(s)	221, 532
TspDTI	ATGAA	1 cut(s)	146
TspGWI	ACGGA	1 cut(s)	44
XagI	CCTNNNNNAGG	1 cut(s)	355
XhoI	CTCGAG	1 cut(s)	69
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.