Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002906

Physical Location & Seq

Genomic Coordinates Forward (+)

54848891 .. 54853211

Gene Structure 4321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG462800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGAGGAAAAAGGCTTATGTCCAACAACTAGAAACAAGCCGTTTAAAACTGGCGCAACTGGAGCTCGAACTGGACAGGACTAGAAAACAGGTAGCCTATGGAGGCAGTTCATTTGGTGGTAGTCATATGGGATACAATGGAATTGTGAATTCAGGGATCACTACATTTGAGTTGGAATATGGACACTGGGTAGAAGAGCAGCATAGACAGAATAATGAACTTCGAAAAGCATTGCAAGAACATGCAACTGGTATAGAGCTTCGATTACTTGTAGAAGGTGGTTTGAACCACTATGCTACTCTGTTCCGTATGAAGGCAGATGCTGCTAAGGCTGATATCTTTTACCTACTGTCTGGTATATGGAGAACATCAGTAGAACGTTACTTTCACTGGATTGGAGGATTTCGCCCATCAGAGCTTCTAAATATTATCGAGCCCCAACTTGAGCCATTGACTGATCCACAACCTCTGGATTTCTATAACCTGCGGCAATCATCTCAGCAAGCTGAAGACGCTCTCTCACAGGGAATGGATAAACTACAGCAGACACTGGCCAAGACATTAGAAGCTGATCAAATATGGAGCGGAGAAACTTATGGATCTCAGATGGCTGCTGCATTTGAGAAATTTGAAGCACTGGAGAGCTTTGTTAGCCAGGCTGATCACCTTCGGCAGCAGACTCTGCAGCAAATGTCCCGAATCCTGACAACTCACCAAGCGGCTCGCGGCTTGCTTGCATTAGGAGAGTACTTTGAGCGTCTTCGTGCCCTCAGTTCTCTTTGGGCTGCTCGTCCACGTGAACCAACCGAGTCATATGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

274

Amino Acids

31.33

Weight (kDa)

5.94

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DOG1	PF14144	71 - 145	4.2e-28	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77920
fragaria_vesca	FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390
malus_domestica	MD08G1174200.v1.1
prunus_persica	Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1
pyrus_communis	pycom08g14930
rosa_chinensis	RchiOBHm_Chr7g0240401
rosa_laevigata	RLG00000000680
rosa_multiflora	Rmu_sc0002676.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220150
rosa_rugosa	Rorug07G0335500 Rorug07G0335600 Rorug07G0335700
rosa_samantha	Rh7AG489800 Rh7BG462800 Rh7CG506200 Rh7DG473800
rosa_wichuraiana	Rw7G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	492
AccBSI	CCGCTC	1 cut(s)	585
AccII	CGCG	1 cut(s)	726
AciI	CCGC	4 cut(s)	487, 585, 719, 726
AclI	AACGTT	1 cut(s)	379
AclWI	GGATC	3 cut(s)	164, 452, 607
AcoI	YGGCCR	1 cut(s)	552
AcsI	RAATTY	2 cut(s)	148, 626
AcuI	CTGAAG	1 cut(s)	528
AcvI	CACGTG	1 cut(s)	797
AfaI	GTAC	1 cut(s)	749
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	2 cut(s)	286, 632
AjnI	CCWGG	1 cut(s)	654
AluBI	AGCT	6 cut(s)	64, 259, 418, 506, 569, 645
AluI	AGCT	6 cut(s)	64, 259, 418, 506, 569, 645
Alw21I	GWGCWC	1 cut(s)	66
AlwI	GGATC	3 cut(s)	164, 452, 607
AlwNI	CAGNNNCTG	3 cut(s)	323, 550, 682
AoxI	GGCC	1 cut(s)	552
ApeKI	GCWGC	7 cut(s)	199, 323, 611, 614, 673, 685, 785
ApoI	RAATTY	2 cut(s)	148, 626
AspLEI	GCGC	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	656, 704
AsuII	TTCGAA	1 cut(s)	223
BaeGI	GKGCMC	1 cut(s)	769
BalI	TGGCCA	1 cut(s)	554
BanII	GRGCYC	2 cut(s)	66, 438
BbrPI	CACGTG	1 cut(s)	797
BbsI	GAAGAC	2 cut(s)	516, 752
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	7 cut(s)	211, 310, 598, 601, 685, 697, 772
BccI	CCATC	2 cut(s)	418, 601
BceAI	ACGGC	1 cut(s)	24
BcgI	CGANNNNNNTGC	1 cut(s)	797
BciT130I	CCWGG	1 cut(s)	656
BciVI	GTATCC	1 cut(s)	125
BclI	TGATCA	2 cut(s)	571, 661
BfaI	CTAG	2 cut(s)	29, 81
BfmI	CTRYAG	2 cut(s)	539, 683
BfuAI	ACCTGC	1 cut(s)	492
BfuI	GTATCC	1 cut(s)	125
BmcAI	AGTACT	1 cut(s)	749
Bme1390I	CCNGG	1 cut(s)	656
BmrFI	CCNGG	1 cut(s)	656
BmrI	ACTGGG	1 cut(s)	196
BmsI	GCATC	1 cut(s)	310
BmuI	ACTGGG	1 cut(s)	196
BpiI	GAAGAC	2 cut(s)	516, 752
BpmI	CTGGAG	2 cut(s)	80, 659
Bpu10I	CCTNAGC	1 cut(s)	327
Bpu14I	TTCGAA	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	464
BsaAI	YACGTR	1 cut(s)	797
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	8 cut(s)	54, 63, 75, 191, 253, 395, 555, 642
Bse3DI	GCAATG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	656
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMI	GCAATG	1 cut(s)	230
BseMII	CTCAG	3 cut(s)	512, 617, 784
BseNI	ACTGG	8 cut(s)	54, 63, 75, 191, 253, 395, 555, 642
BseSI	GKGCMC	1 cut(s)	769
BseXI	GCAGC	7 cut(s)	211, 310, 598, 601, 685, 697, 772
Bsh1236I	CGCG	1 cut(s)	726
BshFI	GGCC	1 cut(s)	554
BsiHKAI	GWGCWC	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	679
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmFI	GGGAC	1 cut(s)	679
BsnI	GGCC	1 cut(s)	554
Bsp119I	TTCGAA	1 cut(s)	223
Bsp1286I	GDGCHC	3 cut(s)	66, 438, 769
Bsp143I	GATC	5 cut(s)	156, 457, 571, 599, 661
BspACI	CCGC	4 cut(s)	487, 585, 719, 726
BspANI	GGCC	1 cut(s)	554
BspCNI	CTCAG	3 cut(s)	511, 616, 783
BspFNI	CGCG	1 cut(s)	726
BspMAI	CTGCAG	1 cut(s)	687
BspMI	ACCTGC	1 cut(s)	492
BspPI	GGATC	3 cut(s)	164, 452, 607
BspQI	GCTCTTC	1 cut(s)	189
BspT104I	TTCGAA	1 cut(s)	223
BsrBI	CCGCTC	1 cut(s)	585
BsrDI	GCAATG	1 cut(s)	230
BsrI	ACTGG	8 cut(s)	54, 63, 75, 191, 253, 395, 555, 642
BssMI	GATC	5 cut(s)	156, 457, 571, 599, 661
Bst2UI	CCWGG	1 cut(s)	656
Bst4CI	ACNGT	1 cut(s)	351
Bst6I	CTCTTC	1 cut(s)	189
BstAPI	GCANNNNNTGC	2 cut(s)	323, 682
BstBAI	YACGTR	1 cut(s)	797
BstBI	TTCGAA	1 cut(s)	223
BstC8I	GCNNGC	4 cut(s)	504, 724, 731, 735
BstDEI	CTNAG	4 cut(s)	327, 498, 603, 770
BstFNI	CGCG	1 cut(s)	726
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	5 cut(s)	159, 460, 574, 602, 664
BstMBI	GATC	5 cut(s)	156, 457, 571, 599, 661
BstMWI	GCNNNNNNNGC	6 cut(s)	61, 323, 329, 512, 651, 682
BstNI	CCWGG	1 cut(s)	656
BstNSI	RCATGY	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	654
BstSFI	CTRYAG	2 cut(s)	539, 683
BstSLI	GKGCMC	1 cut(s)	769
BstUI	CGCG	1 cut(s)	726
BstV1I	GCAGC	7 cut(s)	211, 310, 598, 601, 685, 697, 772
BstV2I	GAAGAC	2 cut(s)	516, 752
BstX2I	RGATCY	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	599
BsuI	GTATCC	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	554
BtsIMutI	CAGTG	4 cut(s)	184, 388, 548, 635
BveI	ACCTGC	1 cut(s)	492
Cac8I	GCNNGC	4 cut(s)	504, 724, 731, 735
CaiI	CAGNNNCTG	3 cut(s)	323, 550, 682
CfoI	GCGC	1 cut(s)	55
CseI	GACGC	2 cut(s)	521, 746
Csp6I	GTAC	1 cut(s)	748
CviAII	CATG	1 cut(s)	242
CviQI	GTAC	1 cut(s)	748
DdeI	CTNAG	4 cut(s)	327, 498, 603, 770
DpnI	GATC	5 cut(s)	158, 459, 573, 601, 663
DpnII	GATC	5 cut(s)	156, 457, 571, 599, 661
DraI	TTTAAA	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	552
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Ecl136II	GAGCTC	1 cut(s)	64
Eco24I	GRGCYC	2 cut(s)	66, 438
Eco32I	GATATC	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	528
Eco72I	CACGTG	1 cut(s)	797
EcoICRI	GAGCTC	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	654
EcoRV	GATATC	1 cut(s)	337
EcoT22I	ATGCAT	1 cut(s)	820
EcoT38I	GRGCYC	2 cut(s)	66, 438
FaeI	CATG	1 cut(s)	245
FaqI	GGGAC	1 cut(s)	679
FatI	CATG	1 cut(s)	241
FauNDI	CATATG	2 cut(s)	126, 814
FbaI	TGATCA	2 cut(s)	571, 661
FriOI	GRGCYC	2 cut(s)	66, 438
FspBI	CTAG	2 cut(s)	29, 81
GlaI	GCGC	1 cut(s)	54
GsuI	CTGGAG	2 cut(s)	80, 659
HaeIII	GGCC	1 cut(s)	554
HgaI	GACGC	2 cut(s)	521, 746
HhaI	GCGC	1 cut(s)	55
Hin1II	CATG	1 cut(s)	245
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HinfI	GANTC	3 cut(s)	679, 699, 809
HphI	GGTGA	2 cut(s)	656, 704
Hpy166II	GTNNAC	2 cut(s)	794, 800
Hpy188I	TCNGA	2 cut(s)	415, 606
Hpy188III	TCNNGA	3 cut(s)	470, 696, 703
Hpy8I	GTNNAC	2 cut(s)	794, 800
HpyAV	CCTTC	3 cut(s)	269, 307, 677
HpyCH4III	ACNGT	1 cut(s)	351
HpyCH4IV	ACGT	2 cut(s)	379, 796
HpyCH4V	TGCA	6 cut(s)	235, 245, 617, 685, 737, 818
HpyF10VI	GCNNNNNNNGC	6 cut(s)	61, 323, 329, 512, 651, 682
HpyF3I	CTNAG	4 cut(s)	327, 498, 603, 770
HpySE526I	ACGT	2 cut(s)	379, 796
Hsp92II	CATG	1 cut(s)	245
HspAI	GCGC	1 cut(s)	53
Ksp22I	TGATCA	2 cut(s)	571, 661
Kzo9I	GATC	5 cut(s)	156, 457, 571, 599, 661
LguI	GCTCTTC	1 cut(s)	189
LmnI	GCTCC	2 cut(s)	61, 582
Lsp1109I	GCAGC	7 cut(s)	211, 310, 598, 601, 685, 697, 772
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	2 cut(s)	29, 81
MaeII	ACGT	2 cut(s)	379, 796
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	5 cut(s)	158, 459, 573, 601, 663
MbiI	CCGCTC	1 cut(s)	585
MboI	GATC	5 cut(s)	156, 457, 571, 599, 661
MboII	GAAGA	3 cut(s)	206, 521, 752
MflI	RGATCY	1 cut(s)	599
MhlI	GDGCHC	3 cut(s)	66, 438, 769
MlsI	TGGCCA	1 cut(s)	554
MluCI	AATT	3 cut(s)	141, 148, 626
MluNI	TGGCCA	1 cut(s)	554
MlyI	GAGTC	2 cut(s)	673, 818
MmeI	TCCRAC	2 cut(s)	46, 153
MnlI	CCTC	4 cut(s)	95, 392, 477, 779
Mox20I	TGGCCA	1 cut(s)	554
Mph1103I	ATGCAT	1 cut(s)	820
MscI	TGGCCA	1 cut(s)	554
MseI	TTAA	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	554
MspR9I	CCNGG	1 cut(s)	656
MvaI	CCWGG	1 cut(s)	656
MvnI	CGCG	1 cut(s)	726
MwoI	GCNNNNNNNGC	6 cut(s)	61, 323, 329, 512, 651, 682
NdeI	CATATG	2 cut(s)	126, 814
NdeII	GATC	5 cut(s)	156, 457, 571, 599, 661
NlaIII	CATG	1 cut(s)	245
NsiI	ATGCAT	1 cut(s)	820
NspI	RCATGY	1 cut(s)	245
NspV	TTCGAA	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	699
PleI	GAGTC	2 cut(s)	673, 817
PmaCI	CACGTG	1 cut(s)	797
PmlI	CACGTG	1 cut(s)	797
PpsI	GAGTC	2 cut(s)	673, 817
Ppu21I	YACGTR	1 cut(s)	797
Psp124BI	GAGCTC	1 cut(s)	66
Psp1406I	AACGTT	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	654
PspCI	CACGTG	1 cut(s)	797
PspGI	CCWGG	1 cut(s)	654
PstI	CTGCAG	1 cut(s)	687
PstNI	CAGNNNCTG	3 cut(s)	323, 550, 682
PsuI	RGATCY	1 cut(s)	599
RsaI	GTAC	1 cut(s)	749
RsaNI	GTAC	1 cut(s)	748
SacI	GAGCTC	1 cut(s)	66
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	44
Sau3AI	GATC	5 cut(s)	156, 457, 571, 599, 661
ScaI	AGTACT	1 cut(s)	749
SchI	GAGTC	2 cut(s)	673, 818
ScrFI	CCNGG	1 cut(s)	656
SduI	GDGCHC	3 cut(s)	66, 438, 769
SfaNI	GCATC	1 cut(s)	310
SfcI	CTRYAG	2 cut(s)	539, 683
SfuI	TTCGAA	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	3 cut(s)	141, 148, 626
SsiI	CCGC	4 cut(s)	487, 585, 719, 726
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	2 cut(s)	29, 81
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	654
TaaI	ACNGT	1 cut(s)	351
TaiI	ACGT	2 cut(s)	382, 799
TaqI	TCGA	4 cut(s)	66, 223, 262, 432
TasI	AATT	3 cut(s)	141, 148, 626
TatI	WGTACW	1 cut(s)	747
TauI	GCSGC	3 cut(s)	490, 722, 729
TfiI	GAWTC	1 cut(s)	699
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	4 cut(s)	191, 395, 555, 642
TseI	GCWGC	7 cut(s)	199, 323, 611, 614, 673, 685, 785
TspDTI	ATGAA	3 cut(s)	99, 231, 326
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	4 cut(s)	191, 395, 555, 642
XapI	RAATTY	2 cut(s)	148, 626
XceI	RCATGY	1 cut(s)	245
XspI	CTAG	2 cut(s)	29, 81
ZrmI	AGTACT	1 cut(s)	749
Zsp2I	ATGCAT	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.