Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002906

Physical Location & Seq

Genomic Coordinates Reverse (-)

21154135 .. 21157436

Gene Structure 3302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1174200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCTTCCACTTTTGCTGGAGTAGGCATGTTACAAGAGAGTATGAGCTATCCATCAACTCAGTTTGCCACGTCAAGACAAATGGGGATATACGAGCCGTTCCGCCAGGTTGATGTGTGGAAAGAAACCTTGAGAGGCTCTAACACAGCTGCTTCCTCAATTATAGAAGTGGATTCTGGGATCGAAACCAAGTTTGGATTTGTTTCTCATGAATCCATGATGCCTTCTGGAAATGATCATGAACCAAACAGATCGGCTGATAAGGTACGGAGACGGTTAGAACAAAATCGTGAAGCTGCACGTAAGAGTCGTATGCGAAAAAAAGCTTATGTTCAACAACTCGAAACAAGCCGTTTAAAACTAGCACAGCTGGAGCAGGAACTTGACAGAGCTAGAAAACAGGGTGCCTATGCAGGCAATGCATTAGGTACTAGTCATATGGGATACAACGGAGCTTTGAATTCAGGGATCACTACATTTGAGATGGAATATGGACACTGGGTTGAAGAACAATACAGACAGAATGTTGAACTCAGAAATGCACTGCAAGATCATGTAACGGACATAGAACTGCAGAAACTCGTAAAGGGTGCCTTGAACCACTACGCCAATCTTTTCCGAATGAAGGCAGATGCAGCAAGGGCTGATGTCTTCTACTTACTGTCTGGCATATGGCGAACATCAGTTGAACGCCATTTTCATTGGATCGGAGGATTTCGCCCCTCAGAGCTGCTAAACATTGTGTTGCCGCAGCTTCAGCCAATGACTGATCAACAACTTTTGGATTTCTGTAACCTGCGGCAATCGTCTCAGCAAGCGGAGGATGCTCTCTCGCAGGGAATGGACAAACTGCAGCAGGCATTGGCACTCAGCATAGCAGCTGATCAAATGAGTGGAGAAAGCTTCGGATCTCAGATGGCTTCTGCACTTGAGAAGTTGGAAGCACTAGAGAGCTTTGTCAGCCAGGTAGATCACCTTCGGCAGCAAACACTGCAGCAAATGTCTCGAATCCTCACAACATACCAAGCAGCGCGAGCCTTGCTTGCAATGGGGGAGTACTTTCACCGGTTACGTGCCCTCAGTTCTCTCTGGACTGCTCGTCCCAGTGAACCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

373

Amino Acids

42.11

Weight (kDa)

6.82

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	86 - 125	7.4e-07	bZIP transcription factor
DOG1	PF14144	176 - 249	1.3e-28	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77920
fragaria_vesca	FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390 FvH4_5g38390
malus_domestica	MD08G1174200.v1.1
prunus_persica	Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1 Prupe.1G508100_v2.0.a1
pyrus_communis	pycom08g14930
rosa_chinensis	RchiOBHm_Chr7g0240401
rosa_laevigata	RLG00000000680
rosa_multiflora	Rmu_sc0002676.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220150
rosa_rugosa	Rorug07G0335500 Rorug07G0335600 Rorug07G0335700
rosa_samantha	Rh7AG489800 Rh7BG462800 Rh7CG506200 Rh7DG473800
rosa_wichuraiana	Rw7G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	804
AccB1I	GGYRCC	2 cut(s)	404, 590
AccII	CGCG	1 cut(s)	1033
AciI	CCGC	4 cut(s)	103, 749, 799, 818
AclWI	GGATC	4 cut(s)	188, 476, 713, 916
AcsI	RAATTY	1 cut(s)	460
AcuI	CTGAAG	1 cut(s)	740
AfaI	GTAC	3 cut(s)	267, 430, 1058
AfiI	CCNNNNNNNGG	1 cut(s)	625
AgeI	ACCGGT	1 cut(s)	1065
AgsI	TTSAA	6 cut(s)	335, 460, 506, 530, 598, 689
AhdI	GACNNNNNGTC	1 cut(s)	1098
AhlI	ACTAGT	1 cut(s)	431
AjiI	CACGTC	1 cut(s)	72
AjnI	CCWGG	2 cut(s)	105, 963
AjuI	GAANNNNNNNTTGG	2 cut(s)	177, 209
Alw26I	GTCTC	3 cut(s)	265, 813, 1008
AlwI	GGATC	4 cut(s)	188, 476, 713, 916
ApoI	RAATTY	1 cut(s)	460
AsiGI	ACCGGT	1 cut(s)	1065
AspLEI	GCGC	1 cut(s)	1033
AsuHPI	GGTGA	2 cut(s)	965, 1055
BaeGI	GKGCMC	1 cut(s)	1078
BanI	GGYRCC	2 cut(s)	404, 590
BarI	GAAGNNNNNNTAC	2 cut(s)	960, 992
BbsI	GAAGAC	1 cut(s)	643
BccI	CCATC	3 cut(s)	61, 478, 910
BceAI	ACGGC	2 cut(s)	82, 336
BcgI	CGANNNNNNTGC	2 cut(s)	986, 1020
BciT130I	CCWGG	2 cut(s)	107, 965
BciVI	GTATCC	1 cut(s)	437
BclI	TGATCA	3 cut(s)	235, 769, 883
BcoDI	GTCTC	3 cut(s)	265, 813, 1008
BcuI	ACTAGT	1 cut(s)	431
BfaI	CTAG	4 cut(s)	362, 393, 432, 947
BfmI	CTRYAG	3 cut(s)	572, 851, 992
BfuAI	ACCTGC	1 cut(s)	804
BfuI	GTATCC	1 cut(s)	437
BmcAI	AGTACT	1 cut(s)	1058
Bme1390I	CCNGG	2 cut(s)	107, 965
BmeRI	GACNNNNNGTC	1 cut(s)	1098
BmgBI	CACGTC	1 cut(s)	72
BmiI	GGNNCC	2 cut(s)	406, 592
BmrFI	CCNGG	2 cut(s)	107, 965
BmrI	ACTGGG	2 cut(s)	508, 1098
BmsI	GCATC	3 cut(s)	210, 622, 814
BmuI	ACTGGG	2 cut(s)	508, 1098
BpiI	GAAGAC	1 cut(s)	643
BpmI	CTGGAG	2 cut(s)	39, 392
BpuEI	CTTGAG	2 cut(s)	151, 950
BsaAI	YACGTR	2 cut(s)	302, 1073
BsaWI	WCCGGW	1 cut(s)	1065
Bsc4I	CCNNNNNNNGG	1 cut(s)	625
Bse118I	RCCGGY	1 cut(s)	1065
Bse1I	ACTGG	2 cut(s)	503, 1104
Bse3DI	GCAATG	2 cut(s)	424, 1053
BseBI	CCWGG	2 cut(s)	107, 965
BseGI	GGATG	1 cut(s)	829
BseLI	CCNNNNNNNGG	1 cut(s)	625
BseMI	GCAATG	2 cut(s)	424, 1053
BseMII	CTCAG	7 cut(s)	74, 547, 738, 824, 883, 926, 1093
BseNI	ACTGG	2 cut(s)	503, 1104
BseSI	GKGCMC	1 cut(s)	1078
BsgI	GTGCAG	2 cut(s)	282, 909
Bsh1236I	CGCG	1 cut(s)	1033
BshNI	GGYRCC	2 cut(s)	404, 590
BshTI	ACCGGT	1 cut(s)	1065
BsiSI	CCGG	1 cut(s)	1066
BslFI	GGGAC	1 cut(s)	1086
BslI	CCNNNNNNNGG	1 cut(s)	625
BsmAI	GTCTC	3 cut(s)	265, 813, 1008
BsmBI	CGTCTC	2 cut(s)	265, 813
BsmFI	GGGAC	1 cut(s)	1086
Bsp1286I	GDGCHC	1 cut(s)	1078
BspACI	CCGC	4 cut(s)	103, 749, 799, 818
BspCNI	CTCAG	7 cut(s)	73, 546, 737, 823, 882, 925, 1092
BspFNI	CGCG	1 cut(s)	1033
BspHI	TCATGA	2 cut(s)	208, 238
BspLI	GGNNCC	2 cut(s)	406, 592
BspMAI	CTGCAG	3 cut(s)	576, 855, 996
BspMI	ACCTGC	1 cut(s)	804
BspPI	GGATC	4 cut(s)	188, 476, 713, 916
BspT107I	GGYRCC	2 cut(s)	404, 590
BsrDI	GCAATG	2 cut(s)	424, 1053
BsrFI	RCCGGY	1 cut(s)	1065
BsrI	ACTGG	2 cut(s)	503, 1104
BssAI	RCCGGY	1 cut(s)	1065
Bst2UI	CCWGG	2 cut(s)	107, 965
Bst4CI	ACNGT	2 cut(s)	276, 663
BstAPI	GCANNNNNTGC	2 cut(s)	419, 991
BstBAI	YACGTR	2 cut(s)	302, 1073
BstC8I	GCNNGC	5 cut(s)	415, 816, 858, 1035, 1044
BstDEI	CTNAG	7 cut(s)	60, 533, 724, 810, 869, 912, 1079
BstF5I	GGATG	1 cut(s)	829
BstFNI	CGCG	1 cut(s)	1033
BstHHI	GCGC	1 cut(s)	1033
BstMAI	GTCTC	3 cut(s)	265, 813, 1008
BstNI	CCWGG	2 cut(s)	107, 965
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	2 cut(s)	105, 963
BstSFI	CTRYAG	3 cut(s)	572, 851, 992
BstSLI	GKGCMC	1 cut(s)	1078
BstUI	CGCG	1 cut(s)	1033
BstV2I	GAAGAC	1 cut(s)	643
BstX2I	RGATCY	1 cut(s)	908
BstYI	RGATCY	1 cut(s)	908
BsuI	GTATCC	1 cut(s)	437
BtrI	CACGTC	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	829
BtsI	GCAGTG	2 cut(s)	542, 989
BtsIMutI	CAGTG	4 cut(s)	496, 542, 989, 1111
BveI	ACCTGC	1 cut(s)	804
Cac8I	GCNNGC	5 cut(s)	415, 816, 858, 1035, 1044
CciI	TCATGA	2 cut(s)	208, 238
CfoI	GCGC	1 cut(s)	1033
Cfr10I	RCCGGY	1 cut(s)	1065
Csp6I	GTAC	3 cut(s)	266, 429, 1057
CspAI	ACCGGT	1 cut(s)	1065
CviAII	CATG	5 cut(s)	28, 209, 217, 239, 554
CviQI	GTAC	3 cut(s)	266, 429, 1057
DdeI	CTNAG	7 cut(s)	60, 533, 724, 810, 869, 912, 1079
DraI	TTTAAA	1 cut(s)	357
DriI	GACNNNNNGTC	1 cut(s)	1098
Eam1105I	GACNNNNNGTC	1 cut(s)	1098
EciI	GGCGGA	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	740
EcoRI	GAATTC	1 cut(s)	460
EcoRII	CCWGG	2 cut(s)	105, 963
EcoT22I	ATGCAT	1 cut(s)	424
Esp3I	CGTCTC	2 cut(s)	265, 813
FaeI	CATG	5 cut(s)	31, 212, 220, 242, 557
FalI	AAGNNNNNCTT	2 cut(s)	578, 610
FaqI	GGGAC	1 cut(s)	1086
FatI	CATG	5 cut(s)	27, 208, 216, 238, 553
FauNDI	CATATG	2 cut(s)	438, 671
FbaI	TGATCA	3 cut(s)	235, 769, 883
FokI	GGATG	1 cut(s)	836
FspBI	CTAG	4 cut(s)	362, 393, 432, 947
GlaI	GCGC	1 cut(s)	1032
GsuI	CTGGAG	2 cut(s)	39, 392
HapII	CCGG	1 cut(s)	1066
HhaI	GCGC	1 cut(s)	1033
Hin1II	CATG	5 cut(s)	31, 212, 220, 242, 557
Hin6I	GCGC	1 cut(s)	1031
HinP1I	GCGC	1 cut(s)	1031
HindIII	AAGCTT	2 cut(s)	324, 901
HinfI	GANTC	4 cut(s)	173, 212, 307, 1008
HpaII	CCGG	1 cut(s)	1066
HphI	GGTGA	2 cut(s)	965, 1055
Hpy166II	GTNNAC	1 cut(s)	1109
Hpy188I	TCNGA	6 cut(s)	536, 620, 710, 727, 908, 915
Hpy188III	TCNNGA	7 cut(s)	75, 209, 228, 239, 290, 1005, 1090
Hpy8I	GTNNAC	1 cut(s)	1109
HpyAV	CCTTC	3 cut(s)	234, 619, 986
HpyCH4III	ACNGT	2 cut(s)	276, 663
HpyCH4IV	ACGT	3 cut(s)	71, 301, 1072
HpyF3I	CTNAG	7 cut(s)	60, 533, 724, 810, 869, 912, 1079
HpySE526I	ACGT	3 cut(s)	71, 301, 1072
Hsp92II	CATG	5 cut(s)	31, 212, 220, 242, 557
HspAI	GCGC	1 cut(s)	1031
Ksp22I	TGATCA	3 cut(s)	235, 769, 883
LmnI	GCTCC	2 cut(s)	373, 452
LweI	GCATC	3 cut(s)	210, 622, 814
MaeI	CTAG	4 cut(s)	362, 393, 432, 947
MaeII	ACGT	3 cut(s)	71, 301, 1072
MaeIII	GTNAC	4 cut(s)	30, 556, 791, 1068
MboII	GAAGA	2 cut(s)	518, 643
MflI	RGATCY	1 cut(s)	908
MhlI	GDGCHC	1 cut(s)	1078
MluCI	AATT	2 cut(s)	159, 460
MlyI	GAGTC	1 cut(s)	316
MmeI	TCCRAC	1 cut(s)	918
MnlI	CCTC	7 cut(s)	128, 166, 704, 733, 814, 1022, 1088
Mph1103I	ATGCAT	1 cut(s)	424
MseI	TTAA	1 cut(s)	356
MspA1I	CMGCKG	3 cut(s)	149, 370, 881
MspI	CCGG	1 cut(s)	1066
MspR9I	CCNGG	2 cut(s)	107, 965
MvaI	CCWGG	2 cut(s)	107, 965
MvnI	CGCG	1 cut(s)	1033
NdeI	CATATG	2 cut(s)	438, 671
NlaIII	CATG	5 cut(s)	31, 212, 220, 242, 557
NlaIV	GGNNCC	2 cut(s)	406, 592
NsiI	ATGCAT	1 cut(s)	424
NspI	RCATGY	1 cut(s)	31
PagI	TCATGA	2 cut(s)	208, 238
PcsI	WCGNNNNNNNCGW	1 cut(s)	307
PfeI	GAWTC	3 cut(s)	173, 212, 1008
PinAI	ACCGGT	1 cut(s)	1065
PleI	GAGTC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	315
Ppu21I	YACGTR	2 cut(s)	302, 1073
Psp6I	CCWGG	2 cut(s)	105, 963
PspGI	CCWGG	2 cut(s)	105, 963
PspN4I	GGNNCC	2 cut(s)	406, 592
PstI	CTGCAG	3 cut(s)	576, 855, 996
PsuI	RGATCY	1 cut(s)	908
PvuII	CAGCTG	3 cut(s)	149, 370, 881
RsaI	GTAC	3 cut(s)	267, 430, 1058
RsaNI	GTAC	3 cut(s)	266, 429, 1057
SaqAI	TTAA	1 cut(s)	356
ScaI	AGTACT	1 cut(s)	1058
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	2 cut(s)	107, 965
SduI	GDGCHC	1 cut(s)	1078
SfaNI	GCATC	3 cut(s)	210, 622, 814
SfcI	CTRYAG	3 cut(s)	572, 851, 992
SmlI	CTYRAG	2 cut(s)	130, 929
SmoI	CTYRAG	2 cut(s)	130, 929
SpeI	ACTAGT	1 cut(s)	431
Sse9I	AATT	2 cut(s)	159, 460
SsiI	CCGC	4 cut(s)	103, 749, 799, 818
SspMI	CTAG	4 cut(s)	362, 393, 432, 947
StyD4I	CCNGG	2 cut(s)	105, 963
TaaI	ACNGT	2 cut(s)	276, 663
TaiI	ACGT	3 cut(s)	74, 304, 1075
TaqI	TCGA	3 cut(s)	183, 342, 1006
TasI	AATT	2 cut(s)	159, 460
TatI	WGTACW	1 cut(s)	1056
TauI	GCSGC	2 cut(s)	751, 802
TfiI	GAWTC	3 cut(s)	173, 212, 1008
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	4 cut(s)	503, 549, 996, 1111
TspDTI	ATGAA	4 cut(s)	225, 255, 638, 689
TspGWI	ACGGA	3 cut(s)	283, 465, 575
TspRI	CASTG	4 cut(s)	503, 549, 996, 1111
XapI	RAATTY	1 cut(s)	460
XceI	RCATGY	1 cut(s)	31
XspI	CTAG	4 cut(s)	362, 393, 432, 947
ZrmI	AGTACT	1 cut(s)	1058
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.