Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008700

Physical Location & Seq

Genomic Coordinates Reverse (-)

29667565 .. 29671341

Gene Structure 3777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78915.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGTTGATGACACTAGCGGCGACGACCTCCGTTTCATTTAACTCGAAGCTTCTCCTATTTCGAATACGTTGCTCGGATTCTAACCCTAAGCGTGGCTTCGGCTCAAAAAAGGAAGAGAAAGACCCGGCATTGCAGCAAAGGAAATCATCTTCTAAACAGTCTGTTTCTGTACCCAGAAAGGCACCTGGTCTGAATACTCAGTTTGAAGGAAAATCTGGTCGATCTTTTGATATAGACTTCGATGAACGGCTGGAAAACATCAGAAGGTCAGCTCTTGAGCAGAAAAAGACAGAAGTAGTTAAAGAATTTGGTCCAATTGACTATGATGCACCAGTCAAGTCTGACCAGAAAACAATTGGTCTTGGTACTAAGGTTGGAGTTGGCATAGCTGTTGTTGTATTTGGTTTGGTTTTTGCTCTTGGTGACTTTCTTCCCACGGGAAGTGATAGTCCAACTAAGAACACAACAGTAGTTAAAAATCAAATTTCAGAAGAAGAGAAAGCCACGCTTCAGCAAAGGCTCAAAGAGTTTGAAACAACTCTCAATGGCACGCCTCAGGATCAAGCTGCTCTGGAGGGTGCAGCTGTGACACTGACTGAACTAGGAGATTATTCACGGGCTGCTGCGTTTCTTGAGAAACTCGCTAAGGAGAGACCAACTGACCCTGATGTATTTCGACTGCTTGGAGAAGTAAATTATGAACTTAACAACTATGAAGGCAGTATCGCTGCATACAAAATTTCTGAAAAGGTTTCTAAAGGGATTGATCTTGAAGTTACACGAGGCCTCATGAATGCGTATTTAGCTGCGAAGAAACCAGACGAGGCCGTCAAATTTCTTCTAGACACTCGTGAACGTCTGAATACAAAGAAAACAAGCACAACTGACAGTGTTACAGATGAAACAAATCTAGACCCAATTCAGGTTGAGTTACTTCTCGGAAAAGCGTATTCAGACTGGGGACATATCAGCGACGCGATAGCTGTTTATGACCAGTTAATCAGTGCTCATCCTGAAGACTTCCGAGGCTACTTGGCTAAGGGAATTATATTGAGAGAAAATGGAAGCAGAGGAGATGCAGAGAGAATGTTCATCCAGGCGCGCTTTTTTGCACCAAACAAAGCTAAGGCCCTTGTGGATAGATACTCCAAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

385

Amino Acids

42.58

Weight (kDa)

7.66

Isoelectric Point (pI)

27.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78915 AT1G78915 AT1G78915
fragaria_vesca	FvH4_6g36830 FvH4_6g36830 FvH4_6g36830 FvH4_6g36830
malus_domestica	MD09G1166500.v1.1
prunus_persica	Prupe.3G024200_v2.0.a1 Prupe.3G024200_v2.0.a1 Prupe.3G024200_v2.0.a1
pyrus_communis	pycom09g08400
rosa_chinensis	RchiOBHm_Chr2g0149221
rosa_laevigata	RLG00000020384
rosa_multiflora	Rmu_sc0001615.1_g000005 Rmu_sc0018207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098300
rosa_rugosa	Rorug02G0409900
rosa_samantha	Rh2AG470400 Rh2BG482600 Rh2CG456300 Rh2DG491700
rosa_wichuraiana	Rw2G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	827
AccB1I	GGYRCC	1 cut(s)	181
AccII	CGCG	2 cut(s)	977, 1102
AciI	CCGC	1 cut(s)	17
AclWI	GGATC	1 cut(s)	567
AcsI	RAATTY	4 cut(s)	305, 483, 738, 833
AcuI	CTGAAG	2 cut(s)	494, 1035
AfaI	GTAC	2 cut(s)	171, 367
AfiI	CCNNNNNNNGG	2 cut(s)	92, 922
AgsI	TTSAA	3 cut(s)	206, 533, 773
AjnI	CCWGG	2 cut(s)	184, 1095
AluBI	AGCT	8 cut(s)	49, 272, 389, 566, 584, 806, 983, 1124
AluI	AGCT	8 cut(s)	49, 272, 389, 566, 584, 806, 983, 1124
Alw21I	GWGCWC	1 cut(s)	1009
Alw26I	GTCTC	1 cut(s)	646
AlwI	GGATC	1 cut(s)	567
AoxI	GGCC	3 cut(s)	784, 825, 1128
ApeKI	GCWGC	7 cut(s)	133, 566, 581, 620, 623, 728, 806
ApoI	RAATTY	4 cut(s)	305, 483, 738, 833
AspLEI	GCGC	2 cut(s)	1102, 1104
AspS9I	GGNCC	2 cut(s)	311, 1129
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	434
AsuII	TTCGAA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	311
AxyI	CCTNAGG	1 cut(s)	555
BaeI	ACNNNNGTAYC	2 cut(s)	357, 390
BanI	GGYRCC	1 cut(s)	181
BauI	CACGAG	2 cut(s)	780, 849
BbsI	GAAGAC	1 cut(s)	1023
Bbv12I	GWGCWC	1 cut(s)	1009
BbvI	GCAGC	7 cut(s)	145, 553, 593, 607, 610, 715, 793
BceAI	ACGGC	2 cut(s)	263, 812
BcgI	CGANNNNNNTGC	2 cut(s)	51, 85
BciT130I	CCWGG	2 cut(s)	186, 1097
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	646
BfaI	CTAG	4 cut(s)	14, 602, 842, 911
BisI	GCNGC	8 cut(s)	18, 134, 567, 582, 621, 624, 729, 807
BlsI	GCNGC	8 cut(s)	19, 135, 568, 583, 622, 625, 730, 808
Bme1390I	CCNGG	3 cut(s)	125, 186, 1097
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	2 cut(s)	311, 1129
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	3 cut(s)	125, 186, 1097
BmrI	ACTGGG	1 cut(s)	967
BmsI	GCATC	2 cut(s)	316, 1066
BmuI	ACTGGG	1 cut(s)	967
BpiI	GAAGAC	1 cut(s)	1023
BpmI	CTGGAG	1 cut(s)	593
Bpu10I	CCTNAGC	4 cut(s)	87, 645, 1038, 1125
Bpu14I	TTCGAA	1 cut(s)	61
BpuEI	CTTGAG	2 cut(s)	296, 653
BpuMI	CCSGG	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	646
BsaJI	CCNNGG	2 cut(s)	435, 1024
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 922
Bse1I	ACTGG	3 cut(s)	332, 962, 994
Bse21I	CCTNAGG	1 cut(s)	555
Bse3DI	GCAATG	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	186, 1097
BseDI	CCNNGG	2 cut(s)	435, 1024
BseGI	GGATG	2 cut(s)	1009, 1092
BseLI	CCNNNNNNNGG	2 cut(s)	92, 922
BseMI	GCAATG	1 cut(s)	128
BseMII	CTCAG	2 cut(s)	212, 569
BseNI	ACTGG	3 cut(s)	332, 962, 994
BsePI	GCGCGC	1 cut(s)	1100
BseRI	GAGGAG	1 cut(s)	1086
BseXI	GCAGC	7 cut(s)	145, 553, 593, 607, 610, 715, 793
BsgI	GTGCAG	1 cut(s)	600
Bsh1236I	CGCG	2 cut(s)	977, 1102
BshFI	GGCC	3 cut(s)	786, 827, 1130
BshNI	GGYRCC	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	1009
BsiSI	CCGG	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	975
BslI	CCNNNNNNNGG	2 cut(s)	92, 922
BsmAI	GTCTC	1 cut(s)	646
BsmFI	GGGAC	1 cut(s)	975
BsmI	GAATGC	1 cut(s)	799
BsnI	GGCC	3 cut(s)	786, 827, 1130
Bso31I	GGTCTC	1 cut(s)	646
Bsp119I	TTCGAA	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	1009
Bsp143I	GATC	3 cut(s)	221, 559, 766
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	3 cut(s)	786, 827, 1130
BspCNI	CTCAG	2 cut(s)	211, 568
BspFNI	CGCG	2 cut(s)	977, 1102
BspHI	TCATGA	1 cut(s)	789
BspLI	GGNNCC	1 cut(s)	183
BspPI	GGATC	1 cut(s)	567
BspT104I	TTCGAA	1 cut(s)	61
BspT107I	GGYRCC	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	646
BsrDI	GCAATG	1 cut(s)	128
BsrI	ACTGG	3 cut(s)	332, 962, 994
BssECI	CCNNGG	2 cut(s)	435, 1024
BssHII	GCGCGC	1 cut(s)	1100
BssMI	GATC	3 cut(s)	221, 559, 766
BssSI	CACGAG	2 cut(s)	780, 849
Bst2BI	CACGAG	2 cut(s)	780, 849
Bst2UI	CCWGG	2 cut(s)	186, 1097
Bst4CI	ACNGT	3 cut(s)	159, 469, 890
Bst6I	CTCTTC	2 cut(s)	108, 489
BstBI	TTCGAA	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	551, 1102
BstDEI	CTNAG	8 cut(s)	87, 198, 369, 456, 555, 645, 1038, 1125
BstDSI	CCRYGG	1 cut(s)	435
BstF5I	GGATG	2 cut(s)	1009, 1092
BstFNI	CGCG	2 cut(s)	977, 1102
BstHHI	GCGC	2 cut(s)	1102, 1104
BstKTI	GATC	3 cut(s)	224, 562, 769
BstMAI	GTCTC	1 cut(s)	646
BstMBI	GATC	3 cut(s)	221, 559, 766
BstMWI	GCNNNNNNNGC	1 cut(s)	803
BstNI	CCWGG	2 cut(s)	186, 1097
BstSCI	CCNGG	3 cut(s)	123, 184, 1095
BstUI	CGCG	2 cut(s)	977, 1102
BstV1I	GCAGC	7 cut(s)	145, 553, 593, 607, 610, 715, 793
BstV2I	GAAGAC	1 cut(s)	1023
Bsu36I	CCTNAGG	1 cut(s)	555
BsuRI	GGCC	3 cut(s)	786, 827, 1130
BtgI	CCRYGG	1 cut(s)	435
BtsCI	GGATG	2 cut(s)	1009, 1092
BtsIMutI	CAGTG	3 cut(s)	590, 895, 1009
Cac8I	GCNNGC	2 cut(s)	551, 1102
CciI	TCATGA	1 cut(s)	789
CfoI	GCGC	2 cut(s)	1102, 1104
Cfr13I	GGNCC	2 cut(s)	311, 1129
CseI	GACGC	1 cut(s)	983
CsiI	ACCWGGT	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	170, 366
CviAII	CATG	1 cut(s)	790
CviQI	GTAC	2 cut(s)	170, 366
DdeI	CTNAG	8 cut(s)	87, 198, 369, 456, 555, 645, 1038, 1125
DpnI	GATC	3 cut(s)	223, 561, 768
DpnII	GATC	3 cut(s)	221, 559, 766
DrdI	GACNNNNNNGTC	1 cut(s)	827
DseDI	GACNNNNNNGTC	1 cut(s)	827
Eam1104I	CTCTTC	2 cut(s)	108, 489
EarI	CTCTTC	2 cut(s)	108, 489
Eco147I	AGGCCT	1 cut(s)	786
Eco31I	GGTCTC	1 cut(s)	646
Eco47I	GGWCC	1 cut(s)	311
Eco57I	CTGAAG	2 cut(s)	494, 1035
Eco81I	CCTNAGG	1 cut(s)	555
EcoO109I	RGGNCCY	1 cut(s)	1129
EcoRII	CCWGG	2 cut(s)	184, 1095
FaeI	CATG	1 cut(s)	793
FalI	AAGNNNNNCTT	4 cut(s)	80, 112, 492, 524
FaqI	GGGAC	1 cut(s)	975
FatI	CATG	1 cut(s)	789
Fnu4HI	GCNGC	8 cut(s)	18, 134, 567, 582, 621, 624, 729, 807
FokI	GGATG	2 cut(s)	996, 1079
Fsp4HI	GCNGC	8 cut(s)	18, 134, 567, 582, 621, 624, 729, 807
FspBI	CTAG	4 cut(s)	14, 602, 842, 911
GlaI	GCGC	2 cut(s)	1101, 1103
GluI	GCNGC	8 cut(s)	18, 134, 567, 582, 621, 624, 729, 807
GsuI	CTGGAG	1 cut(s)	593
HaeIII	GGCC	3 cut(s)	786, 827, 1130
HapII	CCGG	1 cut(s)	125
HgaI	GACGC	1 cut(s)	983
HhaI	GCGC	2 cut(s)	1102, 1104
Hin1II	CATG	1 cut(s)	793
Hin6I	GCGC	2 cut(s)	1100, 1102
HinP1I	GCGC	2 cut(s)	1100, 1102
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	1 cut(s)	854
Hpy8I	GTNNAC	1 cut(s)	854
Hpy99I	CGWCG	2 cut(s)	25, 977
HpyAV	CCTTC	3 cut(s)	200, 258, 710
HpyCH4III	ACNGT	3 cut(s)	159, 469, 890
HpyCH4IV	ACGT	2 cut(s)	67, 856
HpyCH4V	TGCA	6 cut(s)	133, 329, 581, 731, 1079, 1112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	803
HpyF3I	CTNAG	8 cut(s)	87, 198, 369, 456, 555, 645, 1038, 1125
HpySE526I	ACGT	2 cut(s)	67, 856
Hsp92II	CATG	1 cut(s)	793
HspAI	GCGC	2 cut(s)	1100, 1102
Kzo9I	GATC	3 cut(s)	221, 559, 766
Lsp1109I	GCAGC	7 cut(s)	145, 553, 593, 607, 610, 715, 793
LweI	GCATC	2 cut(s)	316, 1066
MabI	ACCWGGT	1 cut(s)	184
MaeI	CTAG	4 cut(s)	14, 602, 842, 911
MaeII	ACGT	2 cut(s)	67, 856
MaeIII	GTNAC	5 cut(s)	422, 586, 775, 892, 930
MalI	GATC	3 cut(s)	223, 561, 768
MboI	GATC	3 cut(s)	221, 559, 766
MboII	GAAGA	8 cut(s)	125, 141, 422, 503, 506, 823, 830, 1028
MfeI	CAATTG	2 cut(s)	315, 354
MhlI	GDGCHC	1 cut(s)	1009
MluCI	AATT	9 cut(s)	305, 315, 354, 483, 694, 738, 833, 918, 1044
MmeI	TCCRAC	2 cut(s)	355, 476
MnlI	CCTC	8 cut(s)	37, 564, 568, 776, 797, 817, 1019, 1064
MseI	TTAA	5 cut(s)	39, 300, 474, 705, 998
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	3 cut(s)	125, 186, 1097
MunI	CAATTG	2 cut(s)	315, 354
Mva1269I	GAATGC	1 cut(s)	799
MvaI	CCWGG	2 cut(s)	186, 1097
MvnI	CGCG	2 cut(s)	977, 1102
MwoI	GCNNNNNNNGC	1 cut(s)	803
NciI	CCSGG	1 cut(s)	125
NdeII	GATC	3 cut(s)	221, 559, 766
NlaIII	CATG	1 cut(s)	793
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	2 cut(s)	422, 586
NspV	TTCGAA	1 cut(s)	61
PagI	TCATGA	1 cut(s)	789
PauI	GCGCGC	1 cut(s)	1100
PceI	AGGCCT	1 cut(s)	786
PctI	GAATGC	1 cut(s)	799
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	8 cut(s)	19, 135, 568, 583, 622, 625, 730, 808
Psp6I	CCWGG	2 cut(s)	184, 1095
PspGI	CCWGG	2 cut(s)	184, 1095
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	2 cut(s)	311, 1129
PteI	GCGCGC	1 cut(s)	1100
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	2 cut(s)	171, 367
RsaNI	GTAC	2 cut(s)	170, 366
SaqAI	TTAA	5 cut(s)	39, 300, 474, 705, 998
SatI	GCNGC	8 cut(s)	18, 134, 567, 582, 621, 624, 729, 807
Sau3AI	GATC	3 cut(s)	221, 559, 766
Sau96I	GGNCC	2 cut(s)	311, 1129
ScrFI	CCNGG	3 cut(s)	125, 186, 1097
SduI	GDGCHC	1 cut(s)	1009
SexAI	ACCWGGT	1 cut(s)	184
SfaNI	GCATC	2 cut(s)	316, 1066
SfuI	TTCGAA	1 cut(s)	61
SinI	GGWCC	1 cut(s)	311
SmlI	CTYRAG	2 cut(s)	275, 632
SmoI	CTYRAG	2 cut(s)	275, 632
Sse9I	AATT	9 cut(s)	305, 315, 354, 483, 694, 738, 833, 918, 1044
SseBI	AGGCCT	1 cut(s)	786
SsiI	CCGC	1 cut(s)	17
SspMI	CTAG	4 cut(s)	14, 602, 842, 911
StuI	AGGCCT	1 cut(s)	786
StyD4I	CCNGG	3 cut(s)	123, 184, 1095
TaaI	ACNGT	3 cut(s)	159, 469, 890
TaiI	ACGT	2 cut(s)	70, 859
TaqI	TCGA	5 cut(s)	44, 61, 220, 240, 676
TasI	AATT	9 cut(s)	305, 315, 354, 483, 694, 738, 833, 918, 1044
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	5 cut(s)	39, 300, 474, 705, 998
Tru9I	TTAA	5 cut(s)	39, 300, 474, 705, 998
TscAI	CASTG	3 cut(s)	597, 895, 1009
TseFI	GTSAC	2 cut(s)	422, 586
TseI	GCWGC	7 cut(s)	133, 566, 581, 620, 623, 728, 806
Tsp45I	GTSAC	2 cut(s)	422, 586
TspDTI	ATGAA	7 cut(s)	24, 258, 714, 729, 806, 915, 1081
TspGWI	ACGGA	1 cut(s)	19
TspRI	CASTG	3 cut(s)	597, 895, 1009
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	4 cut(s)	305, 483, 738, 833
XbaI	TCTAGA	2 cut(s)	841, 910
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353
XspI	CTAG	4 cut(s)	14, 602, 842, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.