Prupe.3G024200_v2.0.a1

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0008700
Physical Location & Seq
Forward (+)
1790303 .. 1795658
5356 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G024200.1

Sequence Viewer

Length: 1185 bp
ATGTCACTCGCAGCAACAACAGCGATGACGATGACGACATGTCGTTTCTTTAAGGTCAAAATTCAATGCTCTGATTCGAAGCCCAGAACTGGTTTCGGAACCAAAACCAACAATAAGAACAAAAACCGGAACAAGAACAACCTCAATCAGGAATCCACCACTAAACGGTCGGGTGCTGTTCCTACACAGGCACCTGGATTGAATTCTAGATTTGATGGAAAGGTTAAGAGAAACCCTGCTGACCTTGAGTTTGAGGAACGTCTGCAAGCAGTCAGAAGTTCAGCACTTGAGCAGAAAAAAGTAGTTGAAAAAAAGGAATTTGGGGCAATTGACTATGATGCACCTATTGAGTTGGAGAAGAAGGAAACGAAATCAATTGGACTTGGTACACAGATTGGAGTAGGTGTAGCTGTAGTGGTCTTTGGTTTGGTTTTTGCTCTTGGAGACTTTCTTCCTTCCGGAAGTTTAAGTCCTACTGAGGATGCTGCAATAACCAGTAACAAACTGTCCGAAGAAGAGAAAGTGTCACTTCAGACTCGGCTGAAAGAATATGAAGCGACACTTAGTAACTCCCCGAAGGATCCAACTGCTCTTGAGGGAGCTGCAGTAACCTTAGCAGAATTAGGAGAATATACTCGGGCTTCCACTCTGCTTCAGGACTTGGCTAAGGAGAAACCAAGTGATCCTGAAGTTTTTCGTTTGCTTGGAGAAGTTAAATATGAACTCAAGGATTATGAAGGGAGTGCTGCTGCATATAAGGTTTCTTCAATGGTGTCTAAAGATCTCAAATTTGAAGTTCTGCGTGGCCTTACAAATTCATTACTTGCTGCTAAAAAACCAGATGAGGCTGTTCAGTTTCTTCTTGCCTCTCGTGAACGTATGAATGCTGGCAATCCAGATGCAAAGGCTGGAAGCACTACAACTGAAGCAAATTTGCAGGTGGACCCTATTCAAGTCGAATTACTTCTTGGAAAAGCATATTCAGATTGGGGTCATGTAAGTGATGCTGTATCTGTCTATGATCGGCTCATCTCTAGTCATCCAAATGACTTCCGCGGTTACTTAGCTAAGGGAATTATTTTGAGAGAAAATGGGAAAGTTGGAGAAGCGGAAAGGATGTTTATACAGGCACGGTTTTTTGCACCAGATAAAGCCAAGGCACTTGTGGACCGATATTCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

395

Amino Acids

43.13

Weight (kDa)

8.73

Isoelectric Point (pI)

26.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 928
Acc36I ACCTGC 1 cut(s) 928
AccB1I GGYRCC 1 cut(s) 190
AccII CGCG 1 cut(s) 1056
AccIII TCCGGA 1 cut(s) 458
AciI CCGC 3 cut(s) 1054, 1056, 1109
AclWI GGATC 3 cut(s) 575, 588, 677
AcsI RAATTY 6 cut(s) 60, 202, 317, 788, 814, 931
AcuI CTGAAG 4 cut(s) 515, 638, 708, 945
AfaI GTAC 1 cut(s) 388
AfiI CCNNNNNNNGG 3 cut(s) 89, 148, 165
AflIII ACRYGT 1 cut(s) 38
AgsI TTSAA 7 cut(s) 65, 202, 308, 768, 794, 953, 1179
AhdI GACNNNNNGTC 1 cut(s) 39
AjnI CCWGG 1 cut(s) 193
AjuI GAANNNNNNNTTGG 2 cut(s) 951, 983
AluBI AGCT 3 cut(s) 410, 602, 1067
AluI AGCT 3 cut(s) 410, 602, 1067
Alw26I GTCTC 1 cut(s) 438
AlwI GGATC 3 cut(s) 575, 588, 677
Ama87I CYCGRG 1 cut(s) 636
Aor13HI TCCGGA 1 cut(s) 458
AoxI GGCC 1 cut(s) 805
ApeKI GCWGC 6 cut(s) 11, 485, 602, 746, 749, 827
ApoI RAATTY 6 cut(s) 60, 202, 317, 788, 814, 931
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
Asp700I GAANNNNTTC 2 cut(s) 693, 963
AspS9I GGNCC 2 cut(s) 943, 1168
AsuII TTCGAA 1 cut(s) 77
AvaI CYCGRG 1 cut(s) 636
AvaII GGWCC 2 cut(s) 943, 1168
BamHI GGATCC 1 cut(s) 580
BanI GGYRCC 1 cut(s) 190
BauI CACGAG 1 cut(s) 870
BbvI GCAGC 6 cut(s) 23, 472, 589, 733, 736, 814
BccI CCATC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 438
BfaI CTAG 2 cut(s) 207, 1035
BfmI CTRYAG 2 cut(s) 411, 603
BfuAI ACCTGC 1 cut(s) 928
BglII AGATCT 1 cut(s) 781
BisI GCNGC 6 cut(s) 12, 486, 603, 747, 750, 828
BlsI GCNGC 6 cut(s) 13, 487, 604, 748, 751, 829
Bme1390I CCNGG 1 cut(s) 195
Bme18I GGWCC 2 cut(s) 943, 1168
BmeRI GACNNNNNGTC 1 cut(s) 39
BmeT110I CYCGRG 1 cut(s) 636
BmgT120I GGNCC 2 cut(s) 943, 1168
BmiI GGNNCC 4 cut(s) 100, 192, 582, 945
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 4 cut(s) 328, 472, 889, 994
Bpu10I CCTNAGC 3 cut(s) 613, 666, 1068
Bpu14I TTCGAA 1 cut(s) 77
BpuEI CTTGAG 4 cut(s) 266, 308, 614, 710
BsaJI CCNNGG 2 cut(s) 1054, 1155
BsaWI WCCGGW 2 cut(s) 126, 458
BsaXI ACNNNNNCTCC 4 cut(s) 390, 420, 591, 621
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 148, 165
Bse1I ACTGG 2 cut(s) 94, 495
BseAI TCCGGA 1 cut(s) 458
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 2 cut(s) 1054, 1155
BseGI GGATG 3 cut(s) 487, 1039, 1122
BseLI CCNNNNNNNGG 3 cut(s) 89, 148, 165
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 2 cut(s) 94, 495
BseXI GCAGC 6 cut(s) 23, 472, 589, 733, 736, 814
Bsh1236I CGCG 1 cut(s) 1056
Bsh1285I CGRYCG 1 cut(s) 170
BshFI GGCC 1 cut(s) 807
BshNI GGYRCC 1 cut(s) 190
BsiEI CGRYCG 1 cut(s) 170
BsiHKCI CYCGRG 1 cut(s) 636
BsiSI CCGG 2 cut(s) 127, 459
BslI CCNNNNNNNGG 3 cut(s) 89, 148, 165
BsmAI GTCTC 1 cut(s) 438
BsmI GAATGC 1 cut(s) 889
BsnI GGCC 1 cut(s) 807
BsoBI CYCGRG 1 cut(s) 636
Bsp119I TTCGAA 1 cut(s) 77
Bsp13I TCCGGA 1 cut(s) 458
Bsp143I GATC 4 cut(s) 580, 682, 781, 1021
BspACI CCGC 3 cut(s) 1054, 1056, 1109
BspANI GGCC 1 cut(s) 807
BspCNI CTCAG 1 cut(s) 469
BspEI TCCGGA 1 cut(s) 458
BspFNI CGCG 1 cut(s) 1056
BspLI GGNNCC 4 cut(s) 100, 192, 582, 945
BspMAI CTGCAG 1 cut(s) 607
BspMI ACCTGC 1 cut(s) 928
BspPI GGATC 3 cut(s) 575, 588, 677
BspT104I TTCGAA 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 190
BsrI ACTGG 2 cut(s) 94, 495
BssECI CCNNGG 2 cut(s) 1054, 1155
BssMI GATC 4 cut(s) 580, 682, 781, 1021
BssSI CACGAG 1 cut(s) 870
BssT1I CCWWGG 1 cut(s) 1155
Bst2BI CACGAG 1 cut(s) 870
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 3 cut(s) 168, 507, 1134
Bst6I CTCTTC 1 cut(s) 510
BstBI TTCGAA 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 267, 889
BstDEI CTNAG 6 cut(s) 477, 563, 613, 666, 1063, 1068
BstDSI CCRYGG 1 cut(s) 1054
BstENI CCTNNNNNAGG 1 cut(s) 146
BstF5I GGATG 3 cut(s) 487, 1039, 1122
BstFNI CGCG 1 cut(s) 1056
BstKTI GATC 4 cut(s) 583, 685, 784, 1024
BstMAI GTCTC 1 cut(s) 438
BstMBI GATC 4 cut(s) 580, 682, 781, 1021
BstMCI CGRYCG 1 cut(s) 170
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 193
BstSFI CTRYAG 2 cut(s) 411, 603
BstUI CGCG 1 cut(s) 1056
BstV1I GCAGC 6 cut(s) 23, 472, 589, 733, 736, 814
BstX2I RGATCY 2 cut(s) 580, 781
BstYI RGATCY 2 cut(s) 580, 781
BsuRI GGCC 1 cut(s) 807
BtgI CCRYGG 1 cut(s) 1054
BtgZI GCGATG 1 cut(s) 38
BtsCI GGATG 3 cut(s) 487, 1039, 1122
BveI ACCTGC 1 cut(s) 928
Cac8I GCNNGC 2 cut(s) 267, 889
Cfr13I GGNCC 2 cut(s) 943, 1168
Cfr42I CCGCGG 1 cut(s) 1057
Csp6I GTAC 1 cut(s) 387
CviAII CATG 2 cut(s) 39, 995
CviQI GTAC 1 cut(s) 387
DdeI CTNAG 6 cut(s) 477, 563, 613, 666, 1063, 1068
DpnI GATC 4 cut(s) 582, 684, 783, 1023
DpnII GATC 4 cut(s) 580, 682, 781, 1021
DriI GACNNNNNGTC 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 510
Eam1105I GACNNNNNGTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 510
Eco130I CCWWGG 1 cut(s) 1155
Eco47I GGWCC 2 cut(s) 943, 1168
Eco57I CTGAAG 4 cut(s) 515, 638, 708, 945
Eco88I CYCGRG 1 cut(s) 636
EcoNI CCTNNNNNAGG 1 cut(s) 146
EcoRI GAATTC 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 1155
ErhI CCWWGG 1 cut(s) 1155
FaeI CATG 2 cut(s) 42, 998
FalI AAGNNNNNCTT 4 cut(s) 513, 545, 546, 578
FatI CATG 2 cut(s) 38, 994
Fnu4HI GCNGC 6 cut(s) 12, 486, 603, 747, 750, 828
FokI GGATG 3 cut(s) 494, 1026, 1129
Fsp4HI GCNGC 6 cut(s) 12, 486, 603, 747, 750, 828
FspBI CTAG 2 cut(s) 207, 1035
GluI GCNGC 6 cut(s) 12, 486, 603, 747, 750, 828
HaeIII GGCC 1 cut(s) 807
HapII CCGG 2 cut(s) 127, 459
Hin1II CATG 2 cut(s) 42, 998
HinfI GANTC 3 cut(s) 74, 152, 535
HpaII CCGG 2 cut(s) 127, 459
Hpy166II GTNNAC 4 cut(s) 389, 875, 943, 1168
Hpy188I TCNGA 6 cut(s) 73, 98, 275, 511, 534, 985
Hpy188III TCNNGA 9 cut(s) 149, 207, 459, 593, 656, 686, 872, 896, 1179
Hpy8I GTNNAC 4 cut(s) 389, 875, 943, 1168
HpyAV CCTTC 4 cut(s) 355, 465, 571, 731
HpyCH4III ACNGT 3 cut(s) 168, 507, 1134
HpyCH4IV ACGT 2 cut(s) 259, 877
HpyCH4V TGCA 8 cut(s) 265, 341, 488, 605, 752, 902, 937, 1142
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 6 cut(s) 477, 563, 613, 666, 1063, 1068
HpySE526I ACGT 2 cut(s) 259, 877
Hsp92II CATG 2 cut(s) 42, 998
Kpn2I TCCGGA 1 cut(s) 458
KspI CCGCGG 1 cut(s) 1057
Kzo9I GATC 4 cut(s) 580, 682, 781, 1021
LmnI GCTCC 1 cut(s) 599
Lsp1109I GCAGC 6 cut(s) 23, 472, 589, 733, 736, 814
LweI GCATC 4 cut(s) 328, 472, 889, 994
MaeI CTAG 2 cut(s) 207, 1035
MaeII ACGT 2 cut(s) 259, 877
MaeIII GTNAC 6 cut(s) 3, 497, 525, 566, 607, 1058
MalI GATC 4 cut(s) 582, 684, 783, 1023
MboI GATC 4 cut(s) 580, 682, 781, 1021
MboII GAAGA 6 cut(s) 370, 443, 524, 527, 756, 851
MfeI CAATTG 2 cut(s) 327, 375
MflI RGATCY 2 cut(s) 580, 781
MlyI GAGTC 1 cut(s) 529
MmeI TCCRAC 3 cut(s) 333, 608, 1081
MnlI CCTC 6 cut(s) 152, 247, 472, 589, 838, 877
MroI TCCGGA 1 cut(s) 458
MroXI GAANNNNTTC 2 cut(s) 693, 963
MseI TTAA 4 cut(s) 51, 225, 467, 714
MslI CAYNNNNRTG 2 cut(s) 999, 1044
MspA1I CMGCKG 1 cut(s) 1056
MspI CCGG 2 cut(s) 127, 459
MspR9I CCNGG 1 cut(s) 195
MunI CAATTG 2 cut(s) 327, 375
Mva1269I GAATGC 1 cut(s) 889
MvaI CCWGG 1 cut(s) 195
MvnI CGCG 1 cut(s) 1056
MwoI GCNNNNNNNGC 1 cut(s) 20
NdeII GATC 4 cut(s) 580, 682, 781, 1021
NlaIII CATG 2 cut(s) 42, 998
NlaIV GGNNCC 4 cut(s) 100, 192, 582, 945
NmeAIII GCCGAG 1 cut(s) 517
NmuCI GTSAC 2 cut(s) 3, 525
NspI RCATGY 1 cut(s) 42
NspV TTCGAA 1 cut(s) 77
PaqCI CACCTGC 1 cut(s) 928
PciI ACATGT 1 cut(s) 38
PctI GAATGC 1 cut(s) 889
PdmI GAANNNNTTC 2 cut(s) 693, 963
PfeI GAWTC 2 cut(s) 74, 152
PkrI GCNGC 6 cut(s) 13, 487, 604, 748, 751, 829
PleI GAGTC 1 cut(s) 529
PpsI GAGTC 1 cut(s) 529
PscI ACATGT 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 4 cut(s) 100, 192, 582, 945
PspPI GGNCC 2 cut(s) 943, 1168
PstI CTGCAG 1 cut(s) 607
PsuI RGATCY 2 cut(s) 580, 781
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
RseI CAYNNNNRTG 2 cut(s) 999, 1044
SacII CCGCGG 1 cut(s) 1057
SaqAI TTAA 4 cut(s) 51, 225, 467, 714
SatI GCNGC 6 cut(s) 12, 486, 603, 747, 750, 828
Sau3AI GATC 4 cut(s) 580, 682, 781, 1021
Sau96I GGNCC 2 cut(s) 943, 1168
SchI GAGTC 1 cut(s) 529
ScrFI CCNGG 1 cut(s) 195
SfaNI GCATC 4 cut(s) 328, 472, 889, 994
SfcI CTRYAG 2 cut(s) 411, 603
Sfr303I CCGCGG 1 cut(s) 1057
SfuI TTCGAA 1 cut(s) 77
SgrBI CCGCGG 1 cut(s) 1057
SinI GGWCC 2 cut(s) 943, 1168
SmiMI CAYNNNNRTG 2 cut(s) 999, 1044
SmlI CTYRAG 4 cut(s) 245, 287, 593, 725
SmoI CTYRAG 4 cut(s) 245, 287, 593, 725
SsiI CCGC 3 cut(s) 1054, 1056, 1109
SspMI CTAG 2 cut(s) 207, 1035
StyD4I CCNGG 1 cut(s) 193
StyI CCWWGG 1 cut(s) 1155
TaaI ACNGT 3 cut(s) 168, 507, 1134
TaiI ACGT 2 cut(s) 262, 880
TaqI TCGA 2 cut(s) 77, 957
TaqII GACCGA 1 cut(s) 1185
TfiI GAWTC 2 cut(s) 74, 152
Tru1I TTAA 4 cut(s) 51, 225, 467, 714
Tru9I TTAA 4 cut(s) 51, 225, 467, 714
TseFI GTSAC 2 cut(s) 3, 525
TseI GCWGC 6 cut(s) 11, 485, 602, 746, 749, 827
Tsp45I GTSAC 2 cut(s) 3, 525
TspDTI ATGAA 5 cut(s) 567, 735, 750, 807, 896
VpaK11BI GGWCC 2 cut(s) 943, 1168
XagI CCTNNNNNAGG 1 cut(s) 146
XapI RAATTY 6 cut(s) 60, 202, 317, 788, 814, 931
XbaI TCTAGA 1 cut(s) 206
XceI RCATGY 1 cut(s) 42
XcmI CCANNNNNNNNNTGG 1 cut(s) 1162
XmnI GAANNNNTTC 2 cut(s) 693, 963
XspI CTAG 2 cut(s) 207, 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.