Rh2AG470400

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0008700
Physical Location & Seq
Reverse (-)
69011351 .. 69017306
5956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG470400.1

Sequence Viewer

Length: 960 bp
ATGTTCATCGCCGCAGCAACGACGACGGCGATGACGACGTGTCGTTTCCATACGCTTCGAATTCAATGCGCTGATTCGAAGCCCAGACCCGGGTTCGGAGCCAAAACCAACAACAAGAACAAGAACAAGAACAAGAAAAAGAACAACCTCAACCAGACAAACAAGGCCGCTTCCTCAGTTGAGCAGAAGGGAACTGGTTTTCAACAACGGAAATCAACCACGAACCGGTCTGTGACAAATCAGGCGCCTGGATTAAGTTCCCGATTTGATGGGAAAGTTAAGAGAAATATTGGGGACCTTGAGTTTGAGGAACGTCTGGAAGCAGTTAGAAGTTCAGCACTTGAGCAGAAGAAAACAATTGACAAAGAGGAATTTGGAGCAATTGACTATGATGCACCTGTCAAATCGGAAAAGAAAAAAATTGGACTTGGAACACAGATTGGAGTAGGTGTAGCAGTATTGGTATTTGGTTTGGTTTTTGCTTTGGGGGACTTTCTTCCTTCTAGCAGTGTTAGTCCTACTGAGGATGCTGCAGTAACCAGTAATAAACTGTCCGAAGAAGAGAAAGCTTCACTTCAGACTAGGCTCAAAGAATATGAAGCAACACTTAGTAACAGCCCAAAAGATCCAACTGCTCTTGAGGGAGCTGCAGTAACTTTAGCAGAATTAGGAGAATATACTCAGGCTTCCACTCTGCTTGAGGACTTGAATAAGGAAAAACCAAGTGATCCTGAAGTTTTTCGTCTGCTTGGAGAAGTAAAATATGAACTCAAAGATTATGAAGGGAGTGTTGCTGCATATAAGGTTTCTTCCACGGTGTCCAAAGATCTCAAATTTGAAGTTATGCGTGGCCTTACAAATGCATTGCTTGCTGCTAAAAGACCAGATGAGGTATTCCATTTTTCTTTCACTTATGCTAACTCTCATTTCAGAATACTTCTCTCATTGCATTCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

319

Amino Acids

34.98

Weight (kDa)

9.0

Isoelectric Point (pI)

35.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_19 PF14559 199 - 251 2.9e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AciI CCGC 2 cut(s) 12, 168
AclWI GGATC 2 cut(s) 620, 722
AcsI RAATTY 3 cut(s) 60, 371, 833
AcuI CTGAAG 2 cut(s) 560, 753
AcyI GRCGYC 1 cut(s) 245
AfiI CCNNNNNNNGG 4 cut(s) 89, 90, 95, 225
AflIII ACRYGT 1 cut(s) 38
AgeI ACCGGT 1 cut(s) 225
AgsI TTSAA 4 cut(s) 65, 203, 709, 839
AhdI GACNNNNNGTC 1 cut(s) 39
AjiI CACGTC 1 cut(s) 39
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 2 cut(s) 569, 647
AluI AGCT 2 cut(s) 569, 647
AlwI GGATC 2 cut(s) 620, 722
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 2 cut(s) 165, 850
ApeKI GCWGC 5 cut(s) 14, 530, 647, 794, 872
ApoI RAATTY 3 cut(s) 60, 371, 833
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AsiGI ACCGGT 1 cut(s) 225
Asp700I GAANNNNTTC 1 cut(s) 738
AspLEI GCGC 2 cut(s) 71, 247
AspS9I GGNCC 1 cut(s) 295
AsuC2I CCSGG 2 cut(s) 90, 91
AsuII TTCGAA 2 cut(s) 58, 77
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 1 cut(s) 295
BanI GGYRCC 1 cut(s) 244
BbvI GCAGC 5 cut(s) 26, 517, 634, 781, 859
BccI CCATC 1 cut(s) 263
BceAI ACGGC 1 cut(s) 42
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BciT130I CCWGG 1 cut(s) 249
BcnI CCSGG 2 cut(s) 90, 91
BfaI CTAG 2 cut(s) 504, 582
BfmI CTRYAG 2 cut(s) 531, 648
BfoI RGCGCY 1 cut(s) 248
BglII AGATCT 1 cut(s) 826
BisI GCNGC 7 cut(s) 12, 15, 168, 531, 648, 795, 873
BlsI GCNGC 7 cut(s) 13, 16, 169, 532, 649, 796, 874
Bme1390I CCNGG 3 cut(s) 90, 91, 249
Bme18I GGWCC 1 cut(s) 295
BmeRI GACNNNNNGTC 1 cut(s) 39
BmeT110I CYCGRG 1 cut(s) 89
BmgBI CACGTC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 3 cut(s) 100, 246, 296
BmrFI CCNGG 3 cut(s) 90, 91, 249
BmsI GCATC 2 cut(s) 382, 517
Bpu14I TTCGAA 2 cut(s) 58, 77
BpuEI CTTGAG 4 cut(s) 320, 362, 659, 719
BpuMI CCSGG 2 cut(s) 90, 91
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 89, 813
BsaWI WCCGGW 1 cut(s) 225
BsaXI ACNNNNNCTCC 4 cut(s) 435, 465, 636, 666
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 90, 95, 225
Bse118I RCCGGY 1 cut(s) 225
Bse1I ACTGG 2 cut(s) 199, 540
Bse3DI GCAATG 2 cut(s) 863, 944
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 2 cut(s) 89, 813
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 4 cut(s) 89, 90, 95, 225
BseMI GCAATG 2 cut(s) 863, 944
BseMII CTCAG 3 cut(s) 189, 513, 695
BseNI ACTGG 2 cut(s) 199, 540
BseXI GCAGC 5 cut(s) 26, 517, 634, 781, 859
BshFI GGCC 2 cut(s) 167, 852
BshNI GGYRCC 1 cut(s) 244
BshTI ACCGGT 1 cut(s) 225
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 2 cut(s) 90, 226
BslFI GGGAC 2 cut(s) 308, 503
BslI CCNNNNNNNGG 4 cut(s) 89, 90, 95, 225
BsmFI GGGAC 2 cut(s) 308, 503
BsmI GAATGC 1 cut(s) 949
BsnI GGCC 2 cut(s) 167, 852
BsoBI CYCGRG 1 cut(s) 89
Bsp119I TTCGAA 2 cut(s) 58, 77
Bsp143I GATC 3 cut(s) 625, 727, 826
BspACI CCGC 2 cut(s) 12, 168
BspANI GGCC 2 cut(s) 167, 852
BspCNI CTCAG 3 cut(s) 188, 514, 694
BspLI GGNNCC 3 cut(s) 100, 246, 296
BspMAI CTGCAG 2 cut(s) 535, 652
BspPI GGATC 2 cut(s) 620, 722
BspT104I TTCGAA 2 cut(s) 58, 77
BspT107I GGYRCC 1 cut(s) 244
BsrDI GCAATG 2 cut(s) 863, 944
BsrFI RCCGGY 1 cut(s) 225
BsrI ACTGG 2 cut(s) 199, 540
BssAI RCCGGY 1 cut(s) 225
BssECI CCNNGG 2 cut(s) 89, 813
BssMI GATC 3 cut(s) 625, 727, 826
BssNI GRCGYC 1 cut(s) 245
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 2 cut(s) 552, 817
Bst6I CTCTTC 1 cut(s) 555
BstACI GRCGYC 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 869
BstBI TTCGAA 2 cut(s) 58, 77
BstC8I GCNNGC 1 cut(s) 870
BstDEI CTNAG 4 cut(s) 175, 522, 608, 681
BstDSI CCRYGG 1 cut(s) 813
BstF5I GGATG 1 cut(s) 532
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 2 cut(s) 71, 247
BstKTI GATC 3 cut(s) 628, 730, 829
BstMBI GATC 3 cut(s) 625, 727, 826
BstMWI GCNNNNNNNGC 1 cut(s) 869
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 3 cut(s) 88, 89, 247
BstSFI CTRYAG 2 cut(s) 531, 648
BstV1I GCAGC 5 cut(s) 26, 517, 634, 781, 859
BstX2I RGATCY 2 cut(s) 625, 826
BstYI RGATCY 2 cut(s) 625, 826
BsuRI GGCC 2 cut(s) 167, 852
BtgI CCRYGG 1 cut(s) 813
BtgZI GCGATG 1 cut(s) 44
BtrI CACGTC 1 cut(s) 39
BtsCI GGATG 1 cut(s) 532
BtsI GCAGTG 1 cut(s) 514
BtsIMutI CAGTG 1 cut(s) 514
Cac8I GCNNGC 1 cut(s) 870
CfoI GCGC 2 cut(s) 71, 247
Cfr10I RCCGGY 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 295
Cfr9I CCCGGG 1 cut(s) 89
CspAI ACCGGT 1 cut(s) 225
CspCI CAANNNNNGTGG 2 cut(s) 679, 714
CviJI RGCY 9 cut(s) 82, 101, 167, 569, 586, 618, 647, 686, 852
CviKI_1 RGCY 9 cut(s) 82, 101, 167, 569, 586, 618, 647, 686, 852
DdeI CTNAG 4 cut(s) 175, 522, 608, 681
DinI GGCGCC 1 cut(s) 246
DpnI GATC 3 cut(s) 627, 729, 828
DpnII GATC 3 cut(s) 625, 727, 826
DriI GACNNNNNGTC 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 555
Eam1105I GACNNNNNGTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 555
Eco47I GGWCC 1 cut(s) 295
Eco57I CTGAAG 2 cut(s) 560, 753
Eco88I CYCGRG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 295
EcoRI GAATTC 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 247
EcoT22I ATGCAT 1 cut(s) 865
EgeI GGCGCC 1 cut(s) 246
EheI GGCGCC 1 cut(s) 246
FalI AAGNNNNNCTT 4 cut(s) 558, 590, 591, 623
FaqI GGGAC 2 cut(s) 308, 503
Fnu4HI GCNGC 7 cut(s) 12, 15, 168, 531, 648, 795, 873
FokI GGATG 1 cut(s) 539
Fsp4HI GCNGC 7 cut(s) 12, 15, 168, 531, 648, 795, 873
FspBI CTAG 2 cut(s) 504, 582
GlaI GCGC 2 cut(s) 70, 246
GluI GCNGC 7 cut(s) 12, 15, 168, 531, 648, 795, 873
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 2 cut(s) 167, 852
HapII CCGG 2 cut(s) 90, 226
HhaI GCGC 2 cut(s) 71, 247
Hin1I GRCGYC 1 cut(s) 245
Hin6I GCGC 2 cut(s) 69, 245
HinP1I GCGC 2 cut(s) 69, 245
HindIII AAGCTT 1 cut(s) 567
HinfI GANTC 1 cut(s) 74
HpaII CCGG 2 cut(s) 90, 226
Hpy188I TCNGA 5 cut(s) 98, 409, 556, 579, 932
Hpy188III TCNNGA 4 cut(s) 261, 317, 638, 731
Hpy99I CGWCG 3 cut(s) 25, 28, 40
HpyAV CCTTC 3 cut(s) 181, 510, 776
HpyCH4III ACNGT 2 cut(s) 552, 817
HpyCH4IV ACGT 2 cut(s) 38, 313
HpyCH4V TGCA 6 cut(s) 395, 533, 650, 797, 863, 949
HpyF10VI GCNNNNNNNGC 1 cut(s) 869
HpyF3I CTNAG 4 cut(s) 175, 522, 608, 681
HpySE526I ACGT 2 cut(s) 38, 313
Hsp92I GRCGYC 1 cut(s) 245
HspAI GCGC 2 cut(s) 69, 245
KasI GGCGCC 1 cut(s) 244
Kzo9I GATC 3 cut(s) 625, 727, 826
LmnI GCTCC 3 cut(s) 98, 377, 644
Lsp1109I GCAGC 5 cut(s) 26, 517, 634, 781, 859
LweI GCATC 2 cut(s) 382, 517
MaeI CTAG 2 cut(s) 504, 582
MaeII ACGT 2 cut(s) 38, 313
MaeIII GTNAC 4 cut(s) 232, 535, 611, 652
MalI GATC 3 cut(s) 627, 729, 828
MboI GATC 3 cut(s) 625, 727, 826
MboII GAAGA 5 cut(s) 361, 488, 569, 572, 801
MfeI CAATTG 2 cut(s) 357, 381
MflI RGATCY 2 cut(s) 625, 826
MluCI AATT 7 cut(s) 60, 357, 371, 381, 420, 665, 833
Mly113I GGCGCC 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 653
MnlI CCTC 8 cut(s) 158, 184, 301, 361, 517, 634, 694, 883
Mph1103I ATGCAT 1 cut(s) 865
MroXI GAANNNNTTC 1 cut(s) 738
MseI TTAA 2 cut(s) 254, 279
MspI CCGG 2 cut(s) 90, 226
MspR9I CCNGG 3 cut(s) 90, 91, 249
MunI CAATTG 2 cut(s) 357, 381
Mva1269I GAATGC 1 cut(s) 949
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 869
NarI GGCGCC 1 cut(s) 245
NciI CCSGG 2 cut(s) 90, 91
NdeII GATC 3 cut(s) 625, 727, 826
NlaIV GGNNCC 3 cut(s) 100, 246, 296
NmuCI GTSAC 1 cut(s) 232
NsiI ATGCAT 1 cut(s) 865
NspV TTCGAA 2 cut(s) 58, 77
PcsI WCGNNNNNNNCGW 2 cut(s) 26, 32
PctI GAATGC 1 cut(s) 949
PdmI GAANNNNTTC 1 cut(s) 738
PfeI GAWTC 1 cut(s) 74
PinAI ACCGGT 1 cut(s) 225
PkrI GCNGC 7 cut(s) 13, 16, 169, 532, 649, 796, 874
PluTI GGCGCC 1 cut(s) 248
PpuMI RGGWCCY 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 3 cut(s) 100, 246, 296
PspPI GGNCC 1 cut(s) 295
PspPPI RGGWCCY 1 cut(s) 295
PstI CTGCAG 2 cut(s) 535, 652
PsuI RGATCY 2 cut(s) 625, 826
SaqAI TTAA 2 cut(s) 254, 279
SatI GCNGC 7 cut(s) 12, 15, 168, 531, 648, 795, 873
Sau3AI GATC 3 cut(s) 625, 727, 826
Sau96I GGNCC 1 cut(s) 295
ScrFI CCNGG 3 cut(s) 90, 91, 249
SfaNI GCATC 2 cut(s) 382, 517
SfcI CTRYAG 2 cut(s) 531, 648
SfoI GGCGCC 1 cut(s) 246
SfuI TTCGAA 2 cut(s) 58, 77
SinI GGWCC 1 cut(s) 295
SmaI CCCGGG 1 cut(s) 91
SmlI CTYRAG 4 cut(s) 299, 341, 638, 698
SmoI CTYRAG 4 cut(s) 299, 341, 638, 698
Sse9I AATT 7 cut(s) 60, 357, 371, 381, 420, 665, 833
SsiI CCGC 2 cut(s) 12, 168
SspDI GGCGCC 1 cut(s) 244
SspI AATATT 1 cut(s) 289
SspMI CTAG 2 cut(s) 504, 582
StyD4I CCNGG 3 cut(s) 88, 89, 247
TaaI ACNGT 2 cut(s) 552, 817
TaiI ACGT 2 cut(s) 41, 316
TaqI TCGA 2 cut(s) 58, 77
TasI AATT 7 cut(s) 60, 357, 371, 381, 420, 665, 833
TauI GCSGC 2 cut(s) 14, 170
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 2 cut(s) 254, 279
Tru9I TTAA 2 cut(s) 254, 279
TscAI CASTG 1 cut(s) 514
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 5 cut(s) 14, 530, 647, 794, 872
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 3 cut(s) 612, 780, 795
TspGWI ACGGA 1 cut(s) 223
TspMI CCCGGG 1 cut(s) 89
TspRI CASTG 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 3 cut(s) 60, 371, 833
XmaI CCCGGG 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 738
XspI CTAG 2 cut(s) 504, 582
Zsp2I ATGCAT 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.