FvH4_6g36830

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008700
Physical Location & Seq
Reverse (-)
28918010 .. 28924072
6063 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36830.t1

Sequence Viewer

Length: 1215 bp
ATGTTCATCGCCGCAGCAACAACGACGGCGGTGACGACTTGTCGTTTCCATATGCTTCGAATTCAATGCGCTGATTCTTCGAAGCCCAGACCCGGGTTTGGAACCAAAACCAACAACAAGAGCAAGAAAAAGAACAACCTCAACCAGACAAACAAGGCCACTACCTCAGTTGATCAGAAAGGAACTGGTTTTCAACAAGGGAAATCAACCACTAACCGGTCTGTTACAAATCAGGCGCCTGGATTAAGTTCCCGATTTGATGGGAAGGTTAAGAGAAATCTTGGCGACCTTGAGTTTGAGGAACGTCTGGAAGCAGTTAGAAGTTCAGCACTTCAGCAGAAAAAAACAGTTGAAAAAGAGGAATATGGAGCAATTGACTATGATGCACCTGTCAAATCGGAGAAGAAAAAAATTGGACTTGGAGCACAGATTGGAGTAGGTGTAGCAGTATTGGTATTTGGGTTGGTTTTTGCTTTGGGGGACTTTCTTCCTTCCAGCAGTGTTAGTCCTACTGAGGATGCTGCACTAACCAGTAATAAACTGTCCGAAGAAGAGAAAGCGTCACTTCAGACTAGGCTGAAAGAATATGAAGCAACACTTAGTAACAGCCCAAAAGATCCAACTGCTCTTGAGGGAGCTGCAGTAACTTTGGCAGAATTAGGAGAATATTCTCGGGCTTCCACTCTGCTTGAGGACTTAACTAAGGAAAAACCAAGTGATCCTGAAGTCTTTCGTTTGCTTGGAGAAGTAAAATATGAGCTCAAAGATTATGAAGGGAGTGTTGCTGCATATAAGGTTTCTTCCAAGGTGTCCAAAGATCTCAATTTTGAAGTTATGCGTGGCCTTACAAATGCATTACTTGCTGCTAAAAGACCAGATGAGGCTGTCCAATTTCTTCTCGCCTCTCGATCACGTTTAGATGCAGACAACCCAGAAACAAAGGCAGCAAGCAGTATGACTGGAATGCAGGTGGATCCCATTCAAGTCGAATTACTTCTTGGAAAAGCCTATTCAGATTGGGGCCATGTCAGTGATGCTGTCTCTGTCTATGATAGGCTCATCTCTAGTCATCCAAATGACTTCCGTGGTTACTTAGCTAAGGGAATTATATTAAGAGAAAATGGTAAAGGTGGAGAGGCAGAGCGGATGTTCATACAGGCACGGTTTTTTGCACCAGAGAATGCCAAGGCACTTGTAGATCGGTATTCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

405

Amino Acids

44.1

Weight (kDa)

8.73

Isoelectric Point (pI)

27.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_19 PF14559 196 - 248 2.7e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 958
Acc36I ACCTGC 1 cut(s) 958
AccB1I GGYRCC 1 cut(s) 235
AccBSI CCGCTC 1 cut(s) 1144
AciI CCGC 3 cut(s) 12, 29, 1144
AclWI GGATC 4 cut(s) 611, 713, 968, 981
AcsI RAATTY 1 cut(s) 60
AcuI CTGAAG 3 cut(s) 317, 551, 744
AcyI GRCGYC 1 cut(s) 236
AfiI CCNNNNNNNGG 4 cut(s) 92, 93, 98, 216
AgeI ACCGGT 1 cut(s) 216
AgsI TTSAA 6 cut(s) 65, 194, 353, 830, 983, 1209
AhdI GACNNNNNGTC 1 cut(s) 39
AjnI CCWGG 1 cut(s) 238
AjuI GAANNNNNNNTTGG 2 cut(s) 981, 1013
AluBI AGCT 3 cut(s) 638, 760, 1097
AluI AGCT 3 cut(s) 638, 760, 1097
Alw21I GWGCWC 2 cut(s) 427, 762
Alw26I GTCTC 1 cut(s) 1045
AlwI GGATC 4 cut(s) 611, 713, 968, 981
Ama87I CYCGRG 2 cut(s) 92, 672
AoxI GGCC 3 cut(s) 156, 841, 1021
ApeKI GCWGC 6 cut(s) 14, 521, 638, 785, 863, 944
ApoI RAATTY 1 cut(s) 60
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
AsiGI ACCGGT 1 cut(s) 216
Asp700I GAANNNNTTC 2 cut(s) 729, 993
AspLEI GCGC 2 cut(s) 71, 238
AspS9I GGNCC 1 cut(s) 1021
AsuC2I CCSGG 2 cut(s) 93, 94
AsuHPI GGTGA 1 cut(s) 43
AsuII TTCGAA 2 cut(s) 58, 80
AvaI CYCGRG 2 cut(s) 92, 672
BamHI GGATCC 1 cut(s) 973
BanI GGYRCC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 762
Bbv12I GWGCWC 2 cut(s) 427, 762
BbvI GCAGC 6 cut(s) 26, 508, 625, 772, 850, 956
BccI CCATC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 42
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BciT130I CCWGG 1 cut(s) 240
BclI TGATCA 1 cut(s) 172
BcnI CCSGG 2 cut(s) 93, 94
BcoDI GTCTC 1 cut(s) 1045
BfaI CTAG 2 cut(s) 573, 1065
BfmI CTRYAG 1 cut(s) 639
BfoI RGCGCY 1 cut(s) 239
BfuAI ACCTGC 1 cut(s) 958
BglII AGATCT 1 cut(s) 817
BisI GCNGC 7 cut(s) 12, 15, 522, 639, 786, 864, 945
BlsI GCNGC 7 cut(s) 13, 16, 523, 640, 787, 865, 946
Bme1390I CCNGG 3 cut(s) 93, 94, 240
BmeRI GACNNNNNGTC 1 cut(s) 39
BmeT110I CYCGRG 2 cut(s) 92, 672
BmgT120I GGNCC 1 cut(s) 1021
BmiI GGNNCC 4 cut(s) 103, 237, 975, 1022
BmrFI CCNGG 3 cut(s) 93, 94, 240
BmsI GCATC 4 cut(s) 373, 508, 910, 1024
Bpu10I CCTNAGC 1 cut(s) 1098
Bpu14I TTCGAA 2 cut(s) 58, 80
BpuEI CTTGAG 3 cut(s) 311, 650, 710
BpuMI CCSGG 2 cut(s) 93, 94
BsaHI GRCGYC 1 cut(s) 236
BsaJI CCNNGG 4 cut(s) 92, 804, 1084, 1185
BsaWI WCCGGW 1 cut(s) 216
BsaXI ACNNNNNCTCC 4 cut(s) 426, 456, 627, 657
Bsc4I CCNNNNNNNGG 4 cut(s) 92, 93, 98, 216
Bse118I RCCGGY 1 cut(s) 216
Bse1I ACTGG 3 cut(s) 190, 531, 964
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 4 cut(s) 92, 804, 1084, 1185
BseGI GGATG 3 cut(s) 523, 1069, 1152
BseLI CCNNNNNNNGG 4 cut(s) 92, 93, 98, 216
BseMII CTCAG 2 cut(s) 180, 504
BseNI ACTGG 3 cut(s) 190, 531, 964
BseXI GCAGC 6 cut(s) 26, 508, 625, 772, 850, 956
BsgI GTGCAG 1 cut(s) 507
BshFI GGCC 3 cut(s) 158, 843, 1023
BshNI GGYRCC 1 cut(s) 235
BshTI ACCGGT 1 cut(s) 216
BsiHKAI GWGCWC 2 cut(s) 427, 762
BsiHKCI CYCGRG 2 cut(s) 92, 672
BsiSI CCGG 2 cut(s) 93, 217
BslFI GGGAC 1 cut(s) 494
BslI CCNNNNNNNGG 4 cut(s) 92, 93, 98, 216
BsmAI GTCTC 1 cut(s) 1045
BsmFI GGGAC 1 cut(s) 494
BsmI GAATGC 2 cut(s) 969, 1186
BsnI GGCC 3 cut(s) 158, 843, 1023
BsoBI CYCGRG 2 cut(s) 92, 672
Bsp119I TTCGAA 2 cut(s) 58, 80
Bsp1286I GDGCHC 2 cut(s) 427, 762
Bsp143I GATC 7 cut(s) 172, 616, 718, 817, 908, 973, 1198
BspACI CCGC 3 cut(s) 12, 29, 1144
BspANI GGCC 3 cut(s) 158, 843, 1023
BspCNI CTCAG 2 cut(s) 179, 505
BspLI GGNNCC 4 cut(s) 103, 237, 975, 1022
BspMAI CTGCAG 1 cut(s) 643
BspMI ACCTGC 1 cut(s) 958
BspPI GGATC 4 cut(s) 611, 713, 968, 981
BspT104I TTCGAA 2 cut(s) 58, 80
BspT107I GGYRCC 1 cut(s) 235
BsrBI CCGCTC 1 cut(s) 1144
BsrFI RCCGGY 1 cut(s) 216
BsrI ACTGG 3 cut(s) 190, 531, 964
BssAI RCCGGY 1 cut(s) 216
BssECI CCNNGG 4 cut(s) 92, 804, 1084, 1185
BssMI GATC 7 cut(s) 172, 616, 718, 817, 908, 973, 1198
BssNI GRCGYC 1 cut(s) 236
BssT1I CCWWGG 2 cut(s) 804, 1185
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 3 cut(s) 349, 543, 1164
Bst6I CTCTTC 1 cut(s) 546
BstACI GRCGYC 1 cut(s) 236
BstAPI GCANNNNNTGC 1 cut(s) 860
BstBI TTCGAA 2 cut(s) 58, 80
BstC8I GCNNGC 1 cut(s) 949
BstDEI CTNAG 6 cut(s) 166, 513, 599, 702, 1093, 1098
BstDSI CCRYGG 1 cut(s) 1084
BstF5I GGATG 3 cut(s) 523, 1069, 1152
BstH2I RGCGCY 1 cut(s) 239
BstHHI GCGC 2 cut(s) 71, 238
BstKTI GATC 7 cut(s) 175, 619, 721, 820, 911, 976, 1201
BstMAI GTCTC 1 cut(s) 1045
BstMBI GATC 7 cut(s) 172, 616, 718, 817, 908, 973, 1198
BstMWI GCNNNNNNNGC 1 cut(s) 860
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 3 cut(s) 91, 92, 238
BstSFI CTRYAG 1 cut(s) 639
BstV1I GCAGC 6 cut(s) 26, 508, 625, 772, 850, 956
BstX2I RGATCY 3 cut(s) 616, 817, 973
BstYI RGATCY 3 cut(s) 616, 817, 973
BsuRI GGCC 3 cut(s) 158, 843, 1023
BtgI CCRYGG 1 cut(s) 1084
BtsCI GGATG 3 cut(s) 523, 1069, 1152
BtsI GCAGTG 1 cut(s) 505
BtsIMutI CAGTG 2 cut(s) 505, 1036
BveI ACCTGC 1 cut(s) 958
Cac8I GCNNGC 1 cut(s) 949
CfoI GCGC 2 cut(s) 71, 238
Cfr10I RCCGGY 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 1021
Cfr9I CCCGGG 1 cut(s) 92
CseI GACGC 1 cut(s) 549
CspAI ACCGGT 1 cut(s) 216
CspCI CAANNNNNGTGG 2 cut(s) 670, 705
CviAII CATG 1 cut(s) 1025
DdeI CTNAG 6 cut(s) 166, 513, 599, 702, 1093, 1098
DinI GGCGCC 1 cut(s) 237
DpnI GATC 7 cut(s) 174, 618, 720, 819, 910, 975, 1200
DpnII GATC 7 cut(s) 172, 616, 718, 817, 908, 973, 1198
DriI GACNNNNNGTC 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 546
Eam1105I GACNNNNNGTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 546
Ecl136II GAGCTC 1 cut(s) 760
Eco130I CCWWGG 2 cut(s) 804, 1185
Eco24I GRGCYC 1 cut(s) 762
Eco53kI GAGCTC 1 cut(s) 760
Eco57I CTGAAG 3 cut(s) 317, 551, 744
Eco88I CYCGRG 2 cut(s) 92, 672
EcoICRI GAGCTC 1 cut(s) 760
EcoRI GAATTC 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 238
EcoT14I CCWWGG 2 cut(s) 804, 1185
EcoT22I ATGCAT 1 cut(s) 856
EcoT38I GRGCYC 1 cut(s) 762
EgeI GGCGCC 1 cut(s) 237
EheI GGCGCC 1 cut(s) 237
ErhI CCWWGG 2 cut(s) 804, 1185
FaeI CATG 1 cut(s) 1028
FalI AAGNNNNNCTT 4 cut(s) 549, 581, 582, 614
FaqI GGGAC 1 cut(s) 494
FatI CATG 1 cut(s) 1024
FauNDI CATATG 1 cut(s) 51
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 7 cut(s) 12, 15, 522, 639, 786, 864, 945
FokI GGATG 3 cut(s) 530, 1056, 1159
FriOI GRGCYC 1 cut(s) 762
Fsp4HI GCNGC 7 cut(s) 12, 15, 522, 639, 786, 864, 945
FspBI CTAG 2 cut(s) 573, 1065
GlaI GCGC 2 cut(s) 70, 237
GluI GCNGC 7 cut(s) 12, 15, 522, 639, 786, 864, 945
HaeII RGCGCY 1 cut(s) 239
HaeIII GGCC 3 cut(s) 158, 843, 1023
HapII CCGG 2 cut(s) 93, 217
HgaI GACGC 1 cut(s) 549
HhaI GCGC 2 cut(s) 71, 238
Hin1I GRCGYC 1 cut(s) 236
Hin1II CATG 1 cut(s) 1028
Hin6I GCGC 2 cut(s) 69, 236
HinP1I GCGC 2 cut(s) 69, 236
HinfI GANTC 1 cut(s) 74
HpaII CCGG 2 cut(s) 93, 217
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 5 cut(s) 177, 400, 547, 570, 1015
Hpy188III TCNNGA 5 cut(s) 252, 308, 629, 722, 906
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 3 cut(s) 259, 501, 767
HpyCH4III ACNGT 3 cut(s) 349, 543, 1164
HpyCH4IV ACGT 2 cut(s) 304, 913
HpyCH4V TGCA 8 cut(s) 386, 524, 641, 788, 854, 923, 967, 1172
HpyF10VI GCNNNNNNNGC 1 cut(s) 860
HpyF3I CTNAG 6 cut(s) 166, 513, 599, 702, 1093, 1098
HpySE526I ACGT 2 cut(s) 304, 913
Hsp92I GRCGYC 1 cut(s) 236
Hsp92II CATG 1 cut(s) 1028
HspAI GCGC 2 cut(s) 69, 236
KasI GGCGCC 1 cut(s) 235
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 7 cut(s) 172, 616, 718, 817, 908, 973, 1198
LmnI GCTCC 3 cut(s) 368, 422, 635
Lsp1109I GCAGC 6 cut(s) 26, 508, 625, 772, 850, 956
LweI GCATC 4 cut(s) 373, 508, 910, 1024
MaeI CTAG 2 cut(s) 573, 1065
MaeII ACGT 2 cut(s) 304, 913
MaeIII GTNAC 6 cut(s) 31, 223, 561, 602, 643, 1088
MalI GATC 7 cut(s) 174, 618, 720, 819, 910, 975, 1200
MbiI CCGCTC 1 cut(s) 1144
MboI GATC 7 cut(s) 172, 616, 718, 817, 908, 973, 1198
MboII GAAGA 7 cut(s) 69, 415, 479, 560, 563, 792, 887
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 3 cut(s) 616, 817, 973
MhlI GDGCHC 2 cut(s) 427, 762
MluCI AATT 8 cut(s) 60, 372, 411, 656, 823, 890, 989, 1104
Mly113I GGCGCC 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 644
Mph1103I ATGCAT 1 cut(s) 856
MroXI GAANNNNTTC 2 cut(s) 729, 993
MseI TTAA 4 cut(s) 245, 270, 698, 1112
MslI CAYNNNNRTG 2 cut(s) 1029, 1074
MspI CCGG 2 cut(s) 93, 217
MspR9I CCNGG 3 cut(s) 93, 94, 240
MunI CAATTG 1 cut(s) 372
Mva1269I GAATGC 2 cut(s) 969, 1186
MvaI CCWGG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 860
NarI GGCGCC 1 cut(s) 236
NciI CCSGG 2 cut(s) 93, 94
NdeI CATATG 1 cut(s) 51
NdeII GATC 7 cut(s) 172, 616, 718, 817, 908, 973, 1198
NlaIII CATG 1 cut(s) 1028
NlaIV GGNNCC 4 cut(s) 103, 237, 975, 1022
NmuCI GTSAC 2 cut(s) 31, 561
NsiI ATGCAT 1 cut(s) 856
NspV TTCGAA 2 cut(s) 58, 80
PaqCI CACCTGC 1 cut(s) 958
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PctI GAATGC 2 cut(s) 969, 1186
PdmI GAANNNNTTC 2 cut(s) 729, 993
PfeI GAWTC 1 cut(s) 74
PinAI ACCGGT 1 cut(s) 216
PkrI GCNGC 7 cut(s) 13, 16, 523, 640, 787, 865, 946
PluTI GGCGCC 1 cut(s) 239
Psp124BI GAGCTC 1 cut(s) 762
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 4 cut(s) 103, 237, 975, 1022
PspPI GGNCC 1 cut(s) 1021
PstI CTGCAG 1 cut(s) 643
PsuI RGATCY 3 cut(s) 616, 817, 973
RseI CAYNNNNRTG 2 cut(s) 1029, 1074
SacI GAGCTC 1 cut(s) 762
SaqAI TTAA 4 cut(s) 245, 270, 698, 1112
SatI GCNGC 7 cut(s) 12, 15, 522, 639, 786, 864, 945
Sau3AI GATC 7 cut(s) 172, 616, 718, 817, 908, 973, 1198
Sau96I GGNCC 1 cut(s) 1021
ScrFI CCNGG 3 cut(s) 93, 94, 240
SduI GDGCHC 2 cut(s) 427, 762
SfaNI GCATC 4 cut(s) 373, 508, 910, 1024
SfcI CTRYAG 1 cut(s) 639
SfoI GGCGCC 1 cut(s) 237
SfuI TTCGAA 2 cut(s) 58, 80
SmaI CCCGGG 1 cut(s) 94
SmiMI CAYNNNNRTG 2 cut(s) 1029, 1074
SmlI CTYRAG 3 cut(s) 290, 629, 689
SmoI CTYRAG 3 cut(s) 290, 629, 689
Sse9I AATT 8 cut(s) 60, 372, 411, 656, 823, 890, 989, 1104
SsiI CCGC 3 cut(s) 12, 29, 1144
SspDI GGCGCC 1 cut(s) 235
SspI AATATT 1 cut(s) 668
SspMI CTAG 2 cut(s) 573, 1065
SstI GAGCTC 1 cut(s) 762
StyD4I CCNGG 3 cut(s) 91, 92, 238
StyI CCWWGG 2 cut(s) 804, 1185
TaaI ACNGT 3 cut(s) 349, 543, 1164
TaiI ACGT 2 cut(s) 307, 916
TaqI TCGA 4 cut(s) 58, 80, 907, 987
TasI AATT 8 cut(s) 60, 372, 411, 656, 823, 890, 989, 1104
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 4 cut(s) 245, 270, 698, 1112
Tru9I TTAA 4 cut(s) 245, 270, 698, 1112
TscAI CASTG 2 cut(s) 505, 1036
TseFI GTSAC 2 cut(s) 31, 561
TseI GCWGC 6 cut(s) 14, 521, 638, 785, 863, 944
Tsp45I GTSAC 2 cut(s) 31, 561
TspDTI ATGAA 3 cut(s) 603, 786, 1141
TspGWI ACGGA 1 cut(s) 1073
TspMI CCCGGG 1 cut(s) 92
TspRI CASTG 2 cut(s) 505, 1036
XapI RAATTY 1 cut(s) 60
XmaI CCCGGG 1 cut(s) 92
XmnI GAANNNNTTC 2 cut(s) 729, 993
XspI CTAG 2 cut(s) 573, 1065
Zsp2I ATGCAT 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.