Rroxscaffold_2G00098300

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008700
Physical Location & Seq
Forward (+)
19491283 .. 19497256
5974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00098300.1

Sequence Viewer

Length: 1203 bp
ATGTTCATCGCCGCAGCAGCAACGACGACGTGTCGTTTCCATACGCCTCGAATTCAATGCGCTGATTCGAAGCCCGGACCTGGGTTCGGAACCAAAACCAACAACAAGAACAAGAAAAAGAACAAGAACAACCCCAACCAGACAAACAAGGACGCTACCTCAGTTGAGCAGAAGGGAACTGGTTTTCAACAAAGGAAATCAACCACGAACCGGTCTGTGACAAATCAGGCGCCTGGATTAAGTTCCCGATTTGATGGGAAAGTTAAGAGAAATATTGGGGACCTTGAGTTTGAGGAACGTCTGGAAGCAGTTAGAAGTTCAGCACTTGAGCAGAAGAAAACAATTGACAAAGAGGAATTTGGAGCAATTGACTATGATGCACCTGTCAAATCGGAAAAGAAAAAAATTGGACTTGGAACACAGATTGGAATAGGTGTAGCAGTATTGGTATTTGGTTTGGTTTTTGCTTTGGGGGACTTTCTTCCTTCTAGCAGTGTTAGTCCTACTGAGGATGCTGCAGTAACCAGTAATAAACTGTCCGAAGAAGAGAAAGCTTCACTTCAGACTAGGCTCAAAGAATATGAAGCAACACTTAGTAACAGCCCAAAAGATCCAACTGCTCTTGAGGGAGCTGCAGTAACTTTAGCAGAATTAGGAGAATATACTCGGGCTTCCACTCTGCTTGAGGACTTGACTAAGGTTGTTCTCATGATCCTGAAGTTTTTTCGTCTGCTTGGAGAAGTAAAATATGAACTCAAAGATTATGAAGGGAGTGTTGCTGCATATAAGGTTTCTTCCACGGTGTCCAAAGATCTCAAATTTGAAGTTATGCGTGGCCTTACAAATGGATTGCTTGCTGCTGAAAGACCAGATGAGGCTGTCCAATTTCTTCTTGCCTCTCGATCACGGTTGGGTGCAGACAACCCAAAGGCTGCAAGCAGTATGACTGAACTGCAGGTGGATCCCATTCAAGTCGAATTACTTCTTGGAAAAGCCTATTCAGATTGGGGCCATAACAGTGATGCTGTTTCTGTCTATGATCGGCTCATCTCTAGTCATCCAAATGACTTCCGTGGTTACTTGGCTAAGGGAATTATATTAAGAGAAAATGGTAAAGGTGGAGAAGCAGAGCGGATGTTCATACAGGCACGGTTTTTTGCACCAGAGAAGGCCAAGGCACTTGTAGATCGGTATTCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

400

Amino Acids

43.81

Weight (kDa)

8.98

Isoelectric Point (pI)

27.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 946
Acc36I ACCTGC 1 cut(s) 946
AccB1I GGYRCC 1 cut(s) 229
AccBSI CCGCTC 1 cut(s) 1132
AciI CCGC 2 cut(s) 12, 1132
AclWI GGATC 4 cut(s) 605, 706, 956, 969
AcsI RAATTY 3 cut(s) 51, 356, 818
AcuI CTGAAG 2 cut(s) 545, 737
AcyI GRCGYC 1 cut(s) 230
AfiI CCNNNNNNNGG 4 cut(s) 80, 81, 86, 210
AflIII ACRYGT 1 cut(s) 29
AgeI ACCGGT 1 cut(s) 210
AgsI TTSAA 5 cut(s) 56, 188, 824, 971, 1197
AhdI GACNNNNNGTC 1 cut(s) 30
AjiI CACGTC 1 cut(s) 30
AjnI CCWGG 2 cut(s) 79, 232
AjuI GAANNNNNNNTTGG 2 cut(s) 969, 1001
AluBI AGCT 2 cut(s) 554, 632
AluI AGCT 2 cut(s) 554, 632
AlwI GGATC 4 cut(s) 605, 706, 956, 969
Ama87I CYCGRG 1 cut(s) 666
AoxI GGCC 3 cut(s) 835, 1009, 1170
ApeKI GCWGC 7 cut(s) 14, 17, 515, 632, 779, 857, 932
ApoI RAATTY 3 cut(s) 51, 356, 818
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
AsiGI ACCGGT 1 cut(s) 210
Asp700I GAANNNNTTC 1 cut(s) 981
AspLEI GCGC 2 cut(s) 62, 232
AspS9I GGNCC 3 cut(s) 77, 280, 1009
AsuC2I CCSGG 1 cut(s) 75
AsuII TTCGAA 1 cut(s) 68
AvaI CYCGRG 1 cut(s) 666
AvaII GGWCC 2 cut(s) 77, 280
BamHI GGATCC 1 cut(s) 961
BanI GGYRCC 1 cut(s) 229
BbvI GCAGC 7 cut(s) 26, 29, 502, 619, 766, 844, 919
BccI CCATC 1 cut(s) 248
BcgI CGANNNNNNTGC 2 cut(s) 39, 73
BciT130I CCWGG 2 cut(s) 81, 234
BcnI CCSGG 1 cut(s) 75
BfaI CTAG 3 cut(s) 489, 567, 1053
BfmI CTRYAG 3 cut(s) 516, 633, 953
BfoI RGCGCY 1 cut(s) 233
BfuAI ACCTGC 1 cut(s) 946
BglII AGATCT 1 cut(s) 811
BisI GCNGC 8 cut(s) 12, 15, 18, 516, 633, 780, 858, 933
BlsI GCNGC 8 cut(s) 13, 16, 19, 517, 634, 781, 859, 934
Bme1390I CCNGG 3 cut(s) 75, 81, 234
Bme18I GGWCC 2 cut(s) 77, 280
BmeRI GACNNNNNGTC 1 cut(s) 30
BmeT110I CYCGRG 1 cut(s) 666
BmgBI CACGTC 1 cut(s) 30
BmgT120I GGNCC 3 cut(s) 77, 280, 1009
BmiI GGNNCC 5 cut(s) 91, 231, 281, 963, 1010
BmrFI CCNGG 3 cut(s) 75, 81, 234
BmsI GCATC 3 cut(s) 367, 502, 1012
Bpu10I CCTNAGC 1 cut(s) 1086
Bpu14I TTCGAA 1 cut(s) 68
BpuEI CTTGAG 4 cut(s) 305, 347, 644, 704
BpuMI CCSGG 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 230
BsaJI CCNNGG 4 cut(s) 80, 798, 1072, 1173
BsaWI WCCGGW 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 621, 651
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 81, 86, 210
Bse118I RCCGGY 1 cut(s) 210
Bse1I ACTGG 2 cut(s) 184, 525
BseBI CCWGG 2 cut(s) 81, 234
BseDI CCNNGG 4 cut(s) 80, 798, 1072, 1173
BseGI GGATG 3 cut(s) 517, 1057, 1140
BseLI CCNNNNNNNGG 4 cut(s) 80, 81, 86, 210
BseMII CTCAG 2 cut(s) 174, 498
BseNI ACTGG 2 cut(s) 184, 525
BseXI GCAGC 7 cut(s) 26, 29, 502, 619, 766, 844, 919
BsgI GTGCAG 1 cut(s) 936
BshFI GGCC 3 cut(s) 837, 1011, 1172
BshNI GGYRCC 1 cut(s) 229
BshTI ACCGGT 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 666
BsiSI CCGG 2 cut(s) 75, 211
BslFI GGGAC 2 cut(s) 293, 488
BslI CCNNNNNNNGG 4 cut(s) 80, 81, 86, 210
BsmFI GGGAC 2 cut(s) 293, 488
BsnI GGCC 3 cut(s) 837, 1011, 1172
BsoBI CYCGRG 1 cut(s) 666
Bsp119I TTCGAA 1 cut(s) 68
Bsp143I GATC 7 cut(s) 610, 711, 811, 902, 961, 1039, 1186
BspACI CCGC 2 cut(s) 12, 1132
BspANI GGCC 3 cut(s) 837, 1011, 1172
BspCNI CTCAG 2 cut(s) 173, 499
BspHI TCATGA 1 cut(s) 708
BspLI GGNNCC 5 cut(s) 91, 231, 281, 963, 1010
BspMAI CTGCAG 3 cut(s) 520, 637, 957
BspMI ACCTGC 1 cut(s) 946
BspPI GGATC 4 cut(s) 605, 706, 956, 969
BspT104I TTCGAA 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 229
BsrBI CCGCTC 1 cut(s) 1132
BsrFI RCCGGY 1 cut(s) 210
BsrI ACTGG 2 cut(s) 184, 525
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 4 cut(s) 80, 798, 1072, 1173
BssMI GATC 7 cut(s) 610, 711, 811, 902, 961, 1039, 1186
BssNI GRCGYC 1 cut(s) 230
BssT1I CCWWGG 1 cut(s) 1173
Bst2UI CCWGG 2 cut(s) 81, 234
Bst4CI ACNGT 5 cut(s) 537, 802, 909, 1019, 1152
Bst6I CTCTTC 1 cut(s) 540
BstACI GRCGYC 1 cut(s) 230
BstBI TTCGAA 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 855, 937
BstDEI CTNAG 5 cut(s) 160, 507, 593, 696, 1086
BstDSI CCRYGG 2 cut(s) 798, 1072
BstF5I GGATG 3 cut(s) 517, 1057, 1140
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 2 cut(s) 62, 232
BstKTI GATC 7 cut(s) 613, 714, 814, 905, 964, 1042, 1189
BstMBI GATC 7 cut(s) 610, 711, 811, 902, 961, 1039, 1186
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 2 cut(s) 81, 234
BstSCI CCNGG 3 cut(s) 73, 79, 232
BstSFI CTRYAG 3 cut(s) 516, 633, 953
BstV1I GCAGC 7 cut(s) 26, 29, 502, 619, 766, 844, 919
BstX2I RGATCY 3 cut(s) 610, 811, 961
BstYI RGATCY 3 cut(s) 610, 811, 961
BsuRI GGCC 3 cut(s) 837, 1011, 1172
BtgI CCRYGG 2 cut(s) 798, 1072
BtrI CACGTC 1 cut(s) 30
BtsCI GGATG 3 cut(s) 517, 1057, 1140
BtsI GCAGTG 1 cut(s) 499
BtsIMutI CAGTG 2 cut(s) 499, 1024
BveI ACCTGC 1 cut(s) 946
Cac8I GCNNGC 2 cut(s) 855, 937
CciI TCATGA 1 cut(s) 708
CfoI GCGC 2 cut(s) 62, 232
Cfr10I RCCGGY 1 cut(s) 210
Cfr13I GGNCC 3 cut(s) 77, 280, 1009
CseI GACGC 1 cut(s) 161
CspAI ACCGGT 1 cut(s) 210
CspCI CAANNNNNGTGG 2 cut(s) 664, 699
CviAII CATG 1 cut(s) 709
DdeI CTNAG 5 cut(s) 160, 507, 593, 696, 1086
DinI GGCGCC 1 cut(s) 231
DpnI GATC 7 cut(s) 612, 713, 813, 904, 963, 1041, 1188
DpnII GATC 7 cut(s) 610, 711, 811, 902, 961, 1039, 1186
DriI GACNNNNNGTC 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 540
Eam1105I GACNNNNNGTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 540
Eco130I CCWWGG 1 cut(s) 1173
Eco47I GGWCC 2 cut(s) 77, 280
Eco57I CTGAAG 2 cut(s) 545, 737
Eco88I CYCGRG 1 cut(s) 666
EcoO109I RGGNCCY 1 cut(s) 280
EcoRI GAATTC 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 79, 232
EcoT14I CCWWGG 1 cut(s) 1173
EgeI GGCGCC 1 cut(s) 231
EheI GGCGCC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 1173
FaeI CATG 1 cut(s) 712
FalI AAGNNNNNCTT 4 cut(s) 543, 575, 576, 608
FaqI GGGAC 2 cut(s) 293, 488
FatI CATG 1 cut(s) 708
Fnu4HI GCNGC 8 cut(s) 12, 15, 18, 516, 633, 780, 858, 933
FokI GGATG 3 cut(s) 524, 1044, 1147
Fsp4HI GCNGC 8 cut(s) 12, 15, 18, 516, 633, 780, 858, 933
FspBI CTAG 3 cut(s) 489, 567, 1053
GlaI GCGC 2 cut(s) 61, 231
GluI GCNGC 8 cut(s) 12, 15, 18, 516, 633, 780, 858, 933
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 3 cut(s) 837, 1011, 1172
HapII CCGG 2 cut(s) 75, 211
HgaI GACGC 1 cut(s) 161
HhaI GCGC 2 cut(s) 62, 232
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 1 cut(s) 712
Hin6I GCGC 2 cut(s) 60, 230
HinP1I GCGC 2 cut(s) 60, 230
HindIII AAGCTT 1 cut(s) 552
HinfI GANTC 1 cut(s) 65
HpaII CCGG 2 cut(s) 75, 211
Hpy188I TCNGA 5 cut(s) 89, 394, 541, 564, 1003
Hpy188III TCNNGA 7 cut(s) 246, 302, 623, 709, 715, 900, 1197
Hpy99I CGWCG 2 cut(s) 28, 31
HpyAV CCTTC 4 cut(s) 166, 495, 761, 1162
HpyCH4III ACNGT 5 cut(s) 537, 802, 909, 1019, 1152
HpyCH4IV ACGT 2 cut(s) 29, 298
HpyCH4V TGCA 8 cut(s) 380, 518, 635, 782, 917, 935, 955, 1160
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 5 cut(s) 160, 507, 593, 696, 1086
HpySE526I ACGT 2 cut(s) 29, 298
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 1 cut(s) 712
HspAI GCGC 2 cut(s) 60, 230
KasI GGCGCC 1 cut(s) 229
Kzo9I GATC 7 cut(s) 610, 711, 811, 902, 961, 1039, 1186
LmnI GCTCC 2 cut(s) 362, 629
Lsp1109I GCAGC 7 cut(s) 26, 29, 502, 619, 766, 844, 919
LweI GCATC 3 cut(s) 367, 502, 1012
MaeI CTAG 3 cut(s) 489, 567, 1053
MaeII ACGT 2 cut(s) 29, 298
MaeIII GTNAC 5 cut(s) 217, 520, 596, 637, 1076
MalI GATC 7 cut(s) 612, 713, 813, 904, 963, 1041, 1188
MbiI CCGCTC 1 cut(s) 1132
MboI GATC 7 cut(s) 610, 711, 811, 902, 961, 1039, 1186
MboII GAAGA 6 cut(s) 346, 473, 554, 557, 786, 881
MfeI CAATTG 2 cut(s) 342, 366
MflI RGATCY 3 cut(s) 610, 811, 961
Mly113I GGCGCC 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 638
MnlI CCTC 9 cut(s) 57, 169, 286, 346, 502, 619, 679, 868, 907
MroXI GAANNNNTTC 1 cut(s) 981
MseI TTAA 3 cut(s) 239, 264, 1100
MslI CAYNNNNRTG 2 cut(s) 1017, 1062
MspI CCGG 2 cut(s) 75, 211
MspR9I CCNGG 3 cut(s) 75, 81, 234
MunI CAATTG 2 cut(s) 342, 366
MvaI CCWGG 2 cut(s) 81, 234
MwoI GCNNNNNNNGC 1 cut(s) 17
NarI GGCGCC 1 cut(s) 230
NciI CCSGG 1 cut(s) 75
NdeII GATC 7 cut(s) 610, 711, 811, 902, 961, 1039, 1186
NlaIII CATG 1 cut(s) 712
NlaIV GGNNCC 5 cut(s) 91, 231, 281, 963, 1010
NmuCI GTSAC 1 cut(s) 217
NspV TTCGAA 1 cut(s) 68
PagI TCATGA 1 cut(s) 708
PaqCI CACCTGC 1 cut(s) 946
PdmI GAANNNNTTC 1 cut(s) 981
PfeI GAWTC 1 cut(s) 65
PinAI ACCGGT 1 cut(s) 210
PkrI GCNGC 8 cut(s) 13, 16, 19, 517, 634, 781, 859, 934
PluTI GGCGCC 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 280
Psp6I CCWGG 2 cut(s) 79, 232
PspGI CCWGG 2 cut(s) 79, 232
PspN4I GGNNCC 5 cut(s) 91, 231, 281, 963, 1010
PspPI GGNCC 3 cut(s) 77, 280, 1009
PspPPI RGGWCCY 1 cut(s) 280
PstI CTGCAG 3 cut(s) 520, 637, 957
PsuI RGATCY 3 cut(s) 610, 811, 961
RseI CAYNNNNRTG 2 cut(s) 1017, 1062
SaqAI TTAA 3 cut(s) 239, 264, 1100
SatI GCNGC 8 cut(s) 12, 15, 18, 516, 633, 780, 858, 933
Sau3AI GATC 7 cut(s) 610, 711, 811, 902, 961, 1039, 1186
Sau96I GGNCC 3 cut(s) 77, 280, 1009
ScrFI CCNGG 3 cut(s) 75, 81, 234
SfaNI GCATC 3 cut(s) 367, 502, 1012
SfcI CTRYAG 3 cut(s) 516, 633, 953
SfoI GGCGCC 1 cut(s) 231
SfuI TTCGAA 1 cut(s) 68
SinI GGWCC 2 cut(s) 77, 280
SmiMI CAYNNNNRTG 2 cut(s) 1017, 1062
SmlI CTYRAG 4 cut(s) 284, 326, 623, 683
SmoI CTYRAG 4 cut(s) 284, 326, 623, 683
SsiI CCGC 2 cut(s) 12, 1132
SspDI GGCGCC 1 cut(s) 229
SspI AATATT 1 cut(s) 274
SspMI CTAG 3 cut(s) 489, 567, 1053
StyD4I CCNGG 3 cut(s) 73, 79, 232
StyI CCWWGG 1 cut(s) 1173
TaaI ACNGT 5 cut(s) 537, 802, 909, 1019, 1152
TaiI ACGT 2 cut(s) 32, 301
TaqI TCGA 4 cut(s) 49, 68, 901, 975
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 3 cut(s) 239, 264, 1100
Tru9I TTAA 3 cut(s) 239, 264, 1100
TscAI CASTG 2 cut(s) 499, 1024
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 7 cut(s) 14, 17, 515, 632, 779, 857, 932
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 4 cut(s) 597, 765, 780, 1129
TspGWI ACGGA 1 cut(s) 1061
TspRI CASTG 2 cut(s) 499, 1024
VpaK11BI GGWCC 2 cut(s) 77, 280
XapI RAATTY 3 cut(s) 51, 356, 818
XmnI GAANNNNTTC 1 cut(s) 981
XspI CTAG 3 cut(s) 489, 567, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.