Rw2G038250

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0008700
Physical Location & Seq
Reverse (-)
63186752 .. 63192221
5470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G038250.1

Sequence Viewer

Length: 1215 bp
ATGTTCATCGCCGCAGCAACGACGACGTGTCGTTTCCATACGCCTCGAATTCAATGCGCTGATTCGAAGCCCGGACCTGGGTTCGGAACCAAATCCAACAACAAGAACAAGAAAAAGAACAACCTCAACCCAGGTACCATTTTGTTCCAACACACTCAGACAAACAAGGCCGCTTCCTCAGTTGAGCAGAAGGGAACTGGTTTTCAACAAAGGAAATCAACCACGAACCGGTCTGTTACAAGTCAGGCGCCTGGATTAAGTTCTCGATTTGATGGGAAAGTTAAGAGAAATATTGGGGACCTTGAGTTTGAGGAACGTCTGGAAGCAGTTAGAAGTTCAGCACTTGAGCAGAAGAAAACAATTGACAAAGAGGAATTTGGAGCAATTGACTATGATGCACCTGTCAAATCGGAAAAGAAAAAAATTGGACTTGGAACACAGATTGGAGTCGGTGTAGCAGTATTGGTATTTGGTTTGGTTTTTGCTTTGGGGGACTTTCTTCCTTCTAGCAGTGTTAGTCCTACTGAGGATGCTGCAGTAACCAGTAATAAACTGTCCGAAGAAGAGAAAGCTTCACTTCAGACTAGGCTCAAAGAATATGAAGCAACACTTAGTAACAGCCCAAAAGATCCAACTGCTCTTGAGGGAGCTGCAGTAACTTTAGCAGAATTAGGAGAATATACTCGGGCTTCCACTCTGCTTGAGGACTTGACTAAGGAAAAACCAAGTGATCCTGAAGTTTTTCGTCTGCTTGGAGAAGTAAAATATGAACTCAAAGATTATGAAGGGAGTGTTGCTGCATATAAGGTTTCTTCCACGGTGTCCAAAGATATCAAATTTGAAGTTATGCGTGGCCTTACAAATGCATTGCTTGCTGCTAAAAGACCAGATGAGGCTGTCCAATTTCTTCTTGCCTCTAGATCACGGTTGGATGCAGACAACCCAAAGAGCAGTACGACTGAACTGCAGGTGGATCCCATTCAAGTCGAATTACTTCTTGGAAAAGCCTATTCAGATTGGGGCCATATCAGTGATGCTGTTTCTGTCTATGATCGGCTCATCTCTAGTCATCCAAATGACTTCCGTGGTTACTTGGCTAAGGGAATTATATTAAGAGAAAATGGTAAAGGTGGAGAAGCAGAGCGGATGTTCATACAGGCACGGTTTTTTGCACCAGAGAAGGCCAAGGCACTTGTAGATCGGTATTCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

404

Amino Acids

44.23

Weight (kDa)

8.73

Isoelectric Point (pI)

31.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_19 PF14559 200 - 252 5.5e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 958
Acc36I ACCTGC 1 cut(s) 958
Acc65I GGTACC 1 cut(s) 134
AccB1I GGYRCC 2 cut(s) 134, 247
AccBSI CCGCTC 1 cut(s) 1144
AciI CCGC 3 cut(s) 12, 171, 1144
AclWI GGATC 4 cut(s) 623, 725, 968, 981
AcsI RAATTY 3 cut(s) 48, 374, 836
AcuI CTGAAG 2 cut(s) 563, 756
AcyI GRCGYC 1 cut(s) 248
AfaI GTAC 2 cut(s) 136, 955
AfiI CCNNNNNNNGG 4 cut(s) 77, 78, 83, 228
AflIII ACRYGT 1 cut(s) 26
AgeI ACCGGT 1 cut(s) 228
AgsI TTSAA 5 cut(s) 53, 206, 842, 983, 1209
AhdI GACNNNNNGTC 1 cut(s) 27
AjiI CACGTC 1 cut(s) 27
AjnI CCWGG 3 cut(s) 76, 130, 250
AjuI GAANNNNNNNTTGG 2 cut(s) 981, 1013
AluBI AGCT 2 cut(s) 572, 650
AluI AGCT 2 cut(s) 572, 650
AlwI GGATC 4 cut(s) 623, 725, 968, 981
Ama87I CYCGRG 1 cut(s) 684
AoxI GGCC 4 cut(s) 168, 853, 1021, 1182
ApeKI GCWGC 5 cut(s) 14, 533, 650, 797, 875
ApoI RAATTY 3 cut(s) 48, 374, 836
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AsiGI ACCGGT 1 cut(s) 228
Asp700I GAANNNNTTC 2 cut(s) 741, 993
Asp718I GGTACC 1 cut(s) 134
AspLEI GCGC 2 cut(s) 59, 250
AspS9I GGNCC 3 cut(s) 74, 298, 1021
AsuC2I CCSGG 1 cut(s) 72
AsuII TTCGAA 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 684
AvaII GGWCC 2 cut(s) 74, 298
BaeI ACNNNNGTAYC 2 cut(s) 118, 151
BamHI GGATCC 1 cut(s) 973
BanI GGYRCC 2 cut(s) 134, 247
BbvI GCAGC 5 cut(s) 26, 520, 637, 784, 862
BccI CCATC 1 cut(s) 266
BcgI CGANNNNNNTGC 4 cut(s) 36, 70, 946, 980
BciT130I CCWGG 3 cut(s) 78, 132, 252
BcnI CCSGG 1 cut(s) 72
BfaI CTAG 4 cut(s) 507, 585, 918, 1065
BfmI CTRYAG 3 cut(s) 534, 651, 965
BfoI RGCGCY 1 cut(s) 251
BfuAI ACCTGC 1 cut(s) 958
BisI GCNGC 7 cut(s) 12, 15, 171, 534, 651, 798, 876
BlsI GCNGC 7 cut(s) 13, 16, 172, 535, 652, 799, 877
Bme1390I CCNGG 4 cut(s) 72, 78, 132, 252
Bme18I GGWCC 2 cut(s) 74, 298
BmeRI GACNNNNNGTC 1 cut(s) 27
BmeT110I CYCGRG 1 cut(s) 684
BmgBI CACGTC 1 cut(s) 27
BmgT120I GGNCC 3 cut(s) 74, 298, 1021
BmiI GGNNCC 6 cut(s) 88, 136, 249, 299, 975, 1022
BmrFI CCNGG 4 cut(s) 72, 78, 132, 252
BmsI GCATC 4 cut(s) 385, 520, 922, 1024
Bpu10I CCTNAGC 1 cut(s) 1098
Bpu14I TTCGAA 1 cut(s) 65
BpuEI CTTGAG 4 cut(s) 323, 365, 662, 722
BpuMI CCSGG 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 248
BsaJI CCNNGG 5 cut(s) 77, 130, 816, 1084, 1185
BsaWI WCCGGW 1 cut(s) 228
BsaXI ACNNNNNCTCC 4 cut(s) 438, 468, 639, 669
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 78, 83, 228
Bse118I RCCGGY 1 cut(s) 228
Bse1I ACTGG 2 cut(s) 202, 543
Bse3DI GCAATG 1 cut(s) 866
BseBI CCWGG 3 cut(s) 78, 132, 252
BseDI CCNNGG 5 cut(s) 77, 130, 816, 1084, 1185
BseGI GGATG 4 cut(s) 535, 937, 1069, 1152
BseLI CCNNNNNNNGG 4 cut(s) 77, 78, 83, 228
BseMI GCAATG 1 cut(s) 866
BseMII CTCAG 3 cut(s) 170, 192, 516
BseNI ACTGG 2 cut(s) 202, 543
BseXI GCAGC 5 cut(s) 26, 520, 637, 784, 862
BshFI GGCC 4 cut(s) 170, 855, 1023, 1184
BshNI GGYRCC 2 cut(s) 134, 247
BshTI ACCGGT 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 684
BsiSI CCGG 2 cut(s) 72, 229
BslFI GGGAC 2 cut(s) 311, 506
BslI CCNNNNNNNGG 4 cut(s) 77, 78, 83, 228
BsmFI GGGAC 2 cut(s) 311, 506
BsnI GGCC 4 cut(s) 170, 855, 1023, 1184
BsoBI CYCGRG 1 cut(s) 684
Bsp119I TTCGAA 1 cut(s) 65
Bsp143I GATC 6 cut(s) 628, 730, 920, 973, 1051, 1198
BspACI CCGC 3 cut(s) 12, 171, 1144
BspANI GGCC 4 cut(s) 170, 855, 1023, 1184
BspCNI CTCAG 3 cut(s) 169, 191, 517
BspLI GGNNCC 6 cut(s) 88, 136, 249, 299, 975, 1022
BspMAI CTGCAG 3 cut(s) 538, 655, 969
BspMI ACCTGC 1 cut(s) 958
BspPI GGATC 4 cut(s) 623, 725, 968, 981
BspT104I TTCGAA 1 cut(s) 65
BspT107I GGYRCC 2 cut(s) 134, 247
BsrBI CCGCTC 1 cut(s) 1144
BsrDI GCAATG 1 cut(s) 866
BsrFI RCCGGY 1 cut(s) 228
BsrI ACTGG 2 cut(s) 202, 543
BssAI RCCGGY 1 cut(s) 228
BssECI CCNNGG 5 cut(s) 77, 130, 816, 1084, 1185
BssMI GATC 6 cut(s) 628, 730, 920, 973, 1051, 1198
BssNI GRCGYC 1 cut(s) 248
BssT1I CCWWGG 1 cut(s) 1185
Bst2UI CCWGG 3 cut(s) 78, 132, 252
Bst4CI ACNGT 4 cut(s) 555, 820, 927, 1164
Bst6I CTCTTC 1 cut(s) 558
BstACI GRCGYC 1 cut(s) 248
BstAPI GCANNNNNTGC 1 cut(s) 872
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 873
BstDEI CTNAG 6 cut(s) 156, 178, 525, 611, 714, 1098
BstDSI CCRYGG 2 cut(s) 816, 1084
BstF5I GGATG 4 cut(s) 535, 937, 1069, 1152
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 2 cut(s) 59, 250
BstKTI GATC 6 cut(s) 631, 733, 923, 976, 1054, 1201
BstMBI GATC 6 cut(s) 628, 730, 920, 973, 1051, 1198
BstMWI GCNNNNNNNGC 1 cut(s) 872
BstNI CCWGG 3 cut(s) 78, 132, 252
BstSCI CCNGG 4 cut(s) 70, 76, 130, 250
BstSFI CTRYAG 3 cut(s) 534, 651, 965
BstV1I GCAGC 5 cut(s) 26, 520, 637, 784, 862
BstX2I RGATCY 2 cut(s) 628, 973
BstYI RGATCY 2 cut(s) 628, 973
BsuRI GGCC 4 cut(s) 170, 855, 1023, 1184
BtgI CCRYGG 2 cut(s) 816, 1084
BtrI CACGTC 1 cut(s) 27
BtsCI GGATG 4 cut(s) 535, 937, 1069, 1152
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 2 cut(s) 517, 1036
BveI ACCTGC 1 cut(s) 958
Cac8I GCNNGC 1 cut(s) 873
CfoI GCGC 2 cut(s) 59, 250
Cfr10I RCCGGY 1 cut(s) 228
Cfr13I GGNCC 3 cut(s) 74, 298, 1021
Csp6I GTAC 2 cut(s) 135, 954
CspAI ACCGGT 1 cut(s) 228
CspCI CAANNNNNGTGG 2 cut(s) 682, 717
CviQI GTAC 2 cut(s) 135, 954
DdeI CTNAG 6 cut(s) 156, 178, 525, 611, 714, 1098
DinI GGCGCC 1 cut(s) 249
DpnI GATC 6 cut(s) 630, 732, 922, 975, 1053, 1200
DpnII GATC 6 cut(s) 628, 730, 920, 973, 1051, 1198
DriI GACNNNNNGTC 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 558
Eam1105I GACNNNNNGTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 558
Eco130I CCWWGG 1 cut(s) 1185
Eco32I GATATC 1 cut(s) 832
Eco47I GGWCC 2 cut(s) 74, 298
Eco57I CTGAAG 2 cut(s) 563, 756
Eco88I CYCGRG 1 cut(s) 684
EcoO109I RGGNCCY 1 cut(s) 298
EcoRI GAATTC 1 cut(s) 48
EcoRII CCWGG 3 cut(s) 76, 130, 250
EcoRV GATATC 1 cut(s) 832
EcoT14I CCWWGG 1 cut(s) 1185
EcoT22I ATGCAT 1 cut(s) 868
EgeI GGCGCC 1 cut(s) 249
EheI GGCGCC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 1185
FalI AAGNNNNNCTT 4 cut(s) 561, 593, 594, 626
FaqI GGGAC 2 cut(s) 311, 506
Fnu4HI GCNGC 7 cut(s) 12, 15, 171, 534, 651, 798, 876
FokI GGATG 4 cut(s) 542, 944, 1056, 1159
Fsp4HI GCNGC 7 cut(s) 12, 15, 171, 534, 651, 798, 876
FspBI CTAG 4 cut(s) 507, 585, 918, 1065
GlaI GCGC 2 cut(s) 58, 249
GluI GCNGC 7 cut(s) 12, 15, 171, 534, 651, 798, 876
HaeII RGCGCY 1 cut(s) 251
HaeIII GGCC 4 cut(s) 170, 855, 1023, 1184
HapII CCGG 2 cut(s) 72, 229
HhaI GCGC 2 cut(s) 59, 250
Hin1I GRCGYC 1 cut(s) 248
Hin6I GCGC 2 cut(s) 57, 248
HinP1I GCGC 2 cut(s) 57, 248
HindIII AAGCTT 1 cut(s) 570
HinfI GANTC 2 cut(s) 62, 447
HpaII CCGG 2 cut(s) 72, 229
Hpy188I TCNGA 6 cut(s) 86, 159, 412, 559, 582, 1015
Hpy188III TCNNGA 6 cut(s) 264, 320, 641, 734, 918, 1209
Hpy99I CGWCG 2 cut(s) 25, 28
HpyAV CCTTC 4 cut(s) 184, 513, 779, 1174
HpyCH4III ACNGT 4 cut(s) 555, 820, 927, 1164
HpyCH4IV ACGT 2 cut(s) 26, 316
HpyCH4V TGCA 8 cut(s) 398, 536, 653, 800, 866, 935, 967, 1172
HpyF10VI GCNNNNNNNGC 1 cut(s) 872
HpyF3I CTNAG 6 cut(s) 156, 178, 525, 611, 714, 1098
HpySE526I ACGT 2 cut(s) 26, 316
Hsp92I GRCGYC 1 cut(s) 248
HspAI GCGC 2 cut(s) 57, 248
KasI GGCGCC 1 cut(s) 247
KpnI GGTACC 1 cut(s) 138
Kzo9I GATC 6 cut(s) 628, 730, 920, 973, 1051, 1198
LmnI GCTCC 2 cut(s) 380, 647
Lsp1109I GCAGC 5 cut(s) 26, 520, 637, 784, 862
LweI GCATC 4 cut(s) 385, 520, 922, 1024
MaeI CTAG 4 cut(s) 507, 585, 918, 1065
MaeII ACGT 2 cut(s) 26, 316
MaeIII GTNAC 5 cut(s) 235, 538, 614, 655, 1088
MalI GATC 6 cut(s) 630, 732, 922, 975, 1053, 1200
MbiI CCGCTC 1 cut(s) 1144
MboI GATC 6 cut(s) 628, 730, 920, 973, 1051, 1198
MboII GAAGA 6 cut(s) 364, 491, 572, 575, 804, 899
MfeI CAATTG 2 cut(s) 360, 384
MflI RGATCY 2 cut(s) 628, 973
Mly113I GGCGCC 1 cut(s) 248
MlyI GAGTC 1 cut(s) 456
MmeI TCCRAC 4 cut(s) 120, 172, 656, 909
Mph1103I ATGCAT 1 cut(s) 868
MroXI GAANNNNTTC 2 cut(s) 741, 993
MseI TTAA 3 cut(s) 257, 282, 1112
MslI CAYNNNNRTG 2 cut(s) 1029, 1074
MspI CCGG 2 cut(s) 72, 229
MspR9I CCNGG 4 cut(s) 72, 78, 132, 252
MunI CAATTG 2 cut(s) 360, 384
MvaI CCWGG 3 cut(s) 78, 132, 252
MwoI GCNNNNNNNGC 1 cut(s) 872
NarI GGCGCC 1 cut(s) 248
NciI CCSGG 1 cut(s) 72
NdeII GATC 6 cut(s) 628, 730, 920, 973, 1051, 1198
NlaIV GGNNCC 6 cut(s) 88, 136, 249, 299, 975, 1022
NsiI ATGCAT 1 cut(s) 868
NspV TTCGAA 1 cut(s) 65
PaqCI CACCTGC 1 cut(s) 958
PdmI GAANNNNTTC 2 cut(s) 741, 993
PfeI GAWTC 1 cut(s) 62
PinAI ACCGGT 1 cut(s) 228
PkrI GCNGC 7 cut(s) 13, 16, 172, 535, 652, 799, 877
PleI GAGTC 1 cut(s) 455
PluTI GGCGCC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 455
PpuMI RGGWCCY 1 cut(s) 298
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 3 cut(s) 76, 130, 250
PspGI CCWGG 3 cut(s) 76, 130, 250
PspN4I GGNNCC 6 cut(s) 88, 136, 249, 299, 975, 1022
PspPI GGNCC 3 cut(s) 74, 298, 1021
PspPPI RGGWCCY 1 cut(s) 298
PstI CTGCAG 3 cut(s) 538, 655, 969
PsuI RGATCY 2 cut(s) 628, 973
RsaI GTAC 2 cut(s) 136, 955
RsaNI GTAC 2 cut(s) 135, 954
RseI CAYNNNNRTG 2 cut(s) 1029, 1074
SaqAI TTAA 3 cut(s) 257, 282, 1112
SatI GCNGC 7 cut(s) 12, 15, 171, 534, 651, 798, 876
Sau3AI GATC 6 cut(s) 628, 730, 920, 973, 1051, 1198
Sau96I GGNCC 3 cut(s) 74, 298, 1021
SchI GAGTC 1 cut(s) 456
ScrFI CCNGG 4 cut(s) 72, 78, 132, 252
SfaNI GCATC 4 cut(s) 385, 520, 922, 1024
SfcI CTRYAG 3 cut(s) 534, 651, 965
SfoI GGCGCC 1 cut(s) 249
SfuI TTCGAA 1 cut(s) 65
SinI GGWCC 2 cut(s) 74, 298
SmiMI CAYNNNNRTG 2 cut(s) 1029, 1074
SmlI CTYRAG 4 cut(s) 302, 344, 641, 701
SmoI CTYRAG 4 cut(s) 302, 344, 641, 701
SsiI CCGC 3 cut(s) 12, 171, 1144
SspDI GGCGCC 1 cut(s) 247
SspI AATATT 1 cut(s) 292
SspMI CTAG 4 cut(s) 507, 585, 918, 1065
StyD4I CCNGG 4 cut(s) 70, 76, 130, 250
StyI CCWWGG 1 cut(s) 1185
TaaI ACNGT 4 cut(s) 555, 820, 927, 1164
TaiI ACGT 2 cut(s) 29, 319
TaqI TCGA 4 cut(s) 46, 65, 265, 987
TauI GCSGC 2 cut(s) 14, 173
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 3 cut(s) 257, 282, 1112
Tru9I TTAA 3 cut(s) 257, 282, 1112
TscAI CASTG 2 cut(s) 517, 1036
TseI GCWGC 5 cut(s) 14, 533, 650, 797, 875
TspDTI ATGAA 4 cut(s) 615, 783, 798, 1141
TspGWI ACGGA 1 cut(s) 1073
TspRI CASTG 2 cut(s) 517, 1036
VpaK11BI GGWCC 2 cut(s) 74, 298
XapI RAATTY 3 cut(s) 48, 374, 836
XbaI TCTAGA 1 cut(s) 917
XmnI GAANNNNTTC 2 cut(s) 741, 993
XspI CTAG 4 cut(s) 507, 585, 918, 1065
Zsp2I ATGCAT 1 cut(s) 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.