Rmu_sc0001615.1_g000005

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001615.1
OG0008700
Physical Location & Seq
Reverse (-)
22948 .. 28450
5503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001615.1_g000005.1.cds

Sequence Viewer

Length: 1188 bp
atgttcatcgccgcagcaacgacgacgtgtcgtttccatacgcctcgaattcaatgcgctgattcgaagcccggacctgggttcggaaccaaatccaacaacaagaacaagaaaaagaacaacctcaaccagacaaacaaggccgctacctcagttgagcagaagggaactggttttcaacaaaggaaatcaaccacgaaccggtctgttacaagtcaggcgcctggattaagttctcgatttgatgggaaagttaagagaaatattggggaccttgagtttgaggaacgtctggaagcagttagaagttcagcacttgagcagaagaaaacaattgacaaagaggaatttggagcaattgactatgatgcacctgtcaaatcggaaaagaaaaaaattggacttggaacacagattggagtcggtgtagcagtattggtatttggtttggtttttgctttgggggactttcttccttctagcagtgttagtcctactgaggatgctgcagtaaccaataataaactgtccgaagaagagaaagcttcacttcagactaggctcaaagaatatgaagcaacacttagtaacaccccaaaagatccaactgctcttgagggagctgcagtaactttagcagaattaggagaatatactcgggcttccactctgcttgaggacttgactaaggaaaaaccaagtgatcctgaagtttttcgtctgcttggagaagtaaaatatgaactcaaagattatgaagggagtgttgctgcatataaggtttcttccacggtgtccaaagatctgaaatttgaagttatgcgtggccttacaaatgcattgcttgctgctaaaagaccagatgaggctgtccaatttcttcttgcctctagatcacggttggatgcagacaacccaaagagcagtacgactgaactgcaggtggatcccattcaagtcgaattacttcttggaaaagcctattcagattggggccatatcagtgatgctgtttctgtctatgatcggctcatctctagtcatccaaatgacttccgtggttacttggctaagggaattatattaagagaaaatggtaaaggtggagaagcagagcggatgttcatacaggcacggttttttgcaccagagaaggccaaggcacttgtagatcggtattcaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

395

Amino Acids

43.29

Weight (kDa)

8.73

Isoelectric Point (pI)

29.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 931
Acc36I ACCTGC 1 cut(s) 931
AccB1I GGYRCC 1 cut(s) 220
AccBSI CCGCTC 1 cut(s) 1117
AciI CCGC 3 cut(s) 12, 144, 1117
AclWI GGATC 4 cut(s) 596, 698, 941, 954
AcsI RAATTY 3 cut(s) 48, 347, 809
AcuI CTGAAG 2 cut(s) 536, 729
AcyI GRCGYC 1 cut(s) 221
AfaI GTAC 1 cut(s) 928
AfiI CCNNNNNNNGG 4 cut(s) 77, 78, 83, 201
AflIII ACRYGT 1 cut(s) 26
AgeI ACCGGT 1 cut(s) 201
AgsI TTSAA 5 cut(s) 53, 179, 815, 956, 1182
AhdI GACNNNNNGTC 1 cut(s) 27
AjiI CACGTC 1 cut(s) 27
AjnI CCWGG 2 cut(s) 76, 223
AjuI GAANNNNNNNTTGG 2 cut(s) 954, 986
AluBI AGCT 2 cut(s) 545, 623
AluI AGCT 2 cut(s) 545, 623
AlwI GGATC 4 cut(s) 596, 698, 941, 954
Ama87I CYCGRG 1 cut(s) 657
AoxI GGCC 4 cut(s) 141, 826, 994, 1155
ApeKI GCWGC 5 cut(s) 14, 506, 623, 770, 848
ApoI RAATTY 3 cut(s) 48, 347, 809
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
AsiGI ACCGGT 1 cut(s) 201
Asp700I GAANNNNTTC 2 cut(s) 714, 966
AspLEI GCGC 2 cut(s) 59, 223
AspS9I GGNCC 3 cut(s) 74, 271, 994
AsuC2I CCSGG 1 cut(s) 72
AsuII TTCGAA 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 657
AvaII GGWCC 2 cut(s) 74, 271
BamHI GGATCC 1 cut(s) 946
BanI GGYRCC 1 cut(s) 220
BbvI GCAGC 5 cut(s) 26, 493, 610, 757, 835
BccI CCATC 1 cut(s) 239
BcgI CGANNNNNNTGC 4 cut(s) 36, 70, 919, 953
BciT130I CCWGG 2 cut(s) 78, 225
BcnI CCSGG 1 cut(s) 72
BfaI CTAG 4 cut(s) 480, 558, 891, 1038
BfmI CTRYAG 3 cut(s) 507, 624, 938
BfoI RGCGCY 1 cut(s) 224
BfuAI ACCTGC 1 cut(s) 931
BglII AGATCT 1 cut(s) 802
BisI GCNGC 7 cut(s) 12, 15, 144, 507, 624, 771, 849
BlsI GCNGC 7 cut(s) 13, 16, 145, 508, 625, 772, 850
Bme1390I CCNGG 3 cut(s) 72, 78, 225
Bme18I GGWCC 2 cut(s) 74, 271
BmeRI GACNNNNNGTC 1 cut(s) 27
BmeT110I CYCGRG 1 cut(s) 657
BmgBI CACGTC 1 cut(s) 27
BmgT120I GGNCC 3 cut(s) 74, 271, 994
BmiI GGNNCC 5 cut(s) 88, 222, 272, 948, 995
BmrFI CCNGG 3 cut(s) 72, 78, 225
BmsI GCATC 4 cut(s) 358, 493, 895, 997
Bpu10I CCTNAGC 1 cut(s) 1071
Bpu14I TTCGAA 1 cut(s) 65
BpuEI CTTGAG 4 cut(s) 296, 338, 635, 695
BpuMI CCSGG 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 221
BsaJI CCNNGG 4 cut(s) 77, 789, 1057, 1158
BsaWI WCCGGW 1 cut(s) 201
BsaXI ACNNNNNCTCC 4 cut(s) 411, 441, 612, 642
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 78, 83, 201
Bse118I RCCGGY 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 839
BseBI CCWGG 2 cut(s) 78, 225
BseDI CCNNGG 4 cut(s) 77, 789, 1057, 1158
BseGI GGATG 4 cut(s) 508, 910, 1042, 1125
BseLI CCNNNNNNNGG 4 cut(s) 77, 78, 83, 201
BseMI GCAATG 1 cut(s) 839
BseMII CTCAG 2 cut(s) 165, 489
BseNI ACTGG 1 cut(s) 175
BseXI GCAGC 5 cut(s) 26, 493, 610, 757, 835
BshFI GGCC 4 cut(s) 143, 828, 996, 1157
BshNI GGYRCC 1 cut(s) 220
BshTI ACCGGT 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 657
BsiSI CCGG 2 cut(s) 72, 202
BslFI GGGAC 2 cut(s) 284, 479
BslI CCNNNNNNNGG 4 cut(s) 77, 78, 83, 201
BsmFI GGGAC 2 cut(s) 284, 479
BsnI GGCC 4 cut(s) 143, 828, 996, 1157
BsoBI CYCGRG 1 cut(s) 657
Bsp119I TTCGAA 1 cut(s) 65
Bsp143I GATC 7 cut(s) 601, 703, 802, 893, 946, 1024, 1171
BspACI CCGC 3 cut(s) 12, 144, 1117
BspANI GGCC 4 cut(s) 143, 828, 996, 1157
BspCNI CTCAG 2 cut(s) 164, 490
BspLI GGNNCC 5 cut(s) 88, 222, 272, 948, 995
BspMAI CTGCAG 3 cut(s) 511, 628, 942
BspMI ACCTGC 1 cut(s) 931
BspPI GGATC 4 cut(s) 596, 698, 941, 954
BspT104I TTCGAA 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 220
BsrBI CCGCTC 1 cut(s) 1117
BsrDI GCAATG 1 cut(s) 839
BsrFI RCCGGY 1 cut(s) 201
BsrI ACTGG 1 cut(s) 175
BssAI RCCGGY 1 cut(s) 201
BssECI CCNNGG 4 cut(s) 77, 789, 1057, 1158
BssMI GATC 7 cut(s) 601, 703, 802, 893, 946, 1024, 1171
BssNI GRCGYC 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 1158
Bst2UI CCWGG 2 cut(s) 78, 225
Bst4CI ACNGT 4 cut(s) 528, 793, 900, 1137
Bst6I CTCTTC 1 cut(s) 531
BstACI GRCGYC 1 cut(s) 221
BstAPI GCANNNNNTGC 1 cut(s) 845
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 846
BstDEI CTNAG 5 cut(s) 151, 498, 584, 687, 1071
BstDSI CCRYGG 2 cut(s) 789, 1057
BstF5I GGATG 4 cut(s) 508, 910, 1042, 1125
BstH2I RGCGCY 1 cut(s) 224
BstHHI GCGC 2 cut(s) 59, 223
BstKTI GATC 7 cut(s) 604, 706, 805, 896, 949, 1027, 1174
BstMBI GATC 7 cut(s) 601, 703, 802, 893, 946, 1024, 1171
BstMWI GCNNNNNNNGC 1 cut(s) 845
BstNI CCWGG 2 cut(s) 78, 225
BstSCI CCNGG 3 cut(s) 70, 76, 223
BstSFI CTRYAG 3 cut(s) 507, 624, 938
BstV1I GCAGC 5 cut(s) 26, 493, 610, 757, 835
BstX2I RGATCY 3 cut(s) 601, 802, 946
BstYI RGATCY 3 cut(s) 601, 802, 946
BsuRI GGCC 4 cut(s) 143, 828, 996, 1157
BtgI CCRYGG 2 cut(s) 789, 1057
BtrI CACGTC 1 cut(s) 27
BtsCI GGATG 4 cut(s) 508, 910, 1042, 1125
BtsI GCAGTG 1 cut(s) 490
BtsIMutI CAGTG 2 cut(s) 490, 1009
BveI ACCTGC 1 cut(s) 931
Cac8I GCNNGC 1 cut(s) 846
CfoI GCGC 2 cut(s) 59, 223
Cfr10I RCCGGY 1 cut(s) 201
Cfr13I GGNCC 3 cut(s) 74, 271, 994
Csp6I GTAC 1 cut(s) 927
CspAI ACCGGT 1 cut(s) 201
CspCI CAANNNNNGTGG 2 cut(s) 655, 690
CviQI GTAC 1 cut(s) 927
DdeI CTNAG 5 cut(s) 151, 498, 584, 687, 1071
DinI GGCGCC 1 cut(s) 222
DpnI GATC 7 cut(s) 603, 705, 804, 895, 948, 1026, 1173
DpnII GATC 7 cut(s) 601, 703, 802, 893, 946, 1024, 1171
DriI GACNNNNNGTC 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 531
Eam1105I GACNNNNNGTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 531
Eco130I CCWWGG 1 cut(s) 1158
Eco47I GGWCC 2 cut(s) 74, 271
Eco57I CTGAAG 2 cut(s) 536, 729
Eco88I CYCGRG 1 cut(s) 657
EcoO109I RGGNCCY 1 cut(s) 271
EcoRI GAATTC 1 cut(s) 48
EcoRII CCWGG 2 cut(s) 76, 223
EcoT14I CCWWGG 1 cut(s) 1158
EcoT22I ATGCAT 1 cut(s) 841
EgeI GGCGCC 1 cut(s) 222
EheI GGCGCC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 1158
FalI AAGNNNNNCTT 4 cut(s) 534, 566, 567, 599
FaqI GGGAC 2 cut(s) 284, 479
Fnu4HI GCNGC 7 cut(s) 12, 15, 144, 507, 624, 771, 849
FokI GGATG 4 cut(s) 515, 917, 1029, 1132
Fsp4HI GCNGC 7 cut(s) 12, 15, 144, 507, 624, 771, 849
FspBI CTAG 4 cut(s) 480, 558, 891, 1038
GlaI GCGC 2 cut(s) 58, 222
GluI GCNGC 7 cut(s) 12, 15, 144, 507, 624, 771, 849
HaeII RGCGCY 1 cut(s) 224
HaeIII GGCC 4 cut(s) 143, 828, 996, 1157
HapII CCGG 2 cut(s) 72, 202
HhaI GCGC 2 cut(s) 59, 223
Hin1I GRCGYC 1 cut(s) 221
Hin6I GCGC 2 cut(s) 57, 221
HinP1I GCGC 2 cut(s) 57, 221
HindIII AAGCTT 1 cut(s) 543
HinfI GANTC 2 cut(s) 62, 420
HpaII CCGG 2 cut(s) 72, 202
Hpy188I TCNGA 6 cut(s) 86, 385, 532, 555, 807, 988
Hpy188III TCNNGA 6 cut(s) 237, 293, 614, 707, 891, 1182
Hpy99I CGWCG 2 cut(s) 25, 28
HpyAV CCTTC 4 cut(s) 157, 486, 752, 1147
HpyCH4III ACNGT 4 cut(s) 528, 793, 900, 1137
HpyCH4IV ACGT 2 cut(s) 26, 289
HpyCH4V TGCA 8 cut(s) 371, 509, 626, 773, 839, 908, 940, 1145
HpyF10VI GCNNNNNNNGC 1 cut(s) 845
HpyF3I CTNAG 5 cut(s) 151, 498, 584, 687, 1071
HpySE526I ACGT 2 cut(s) 26, 289
Hsp92I GRCGYC 1 cut(s) 221
HspAI GCGC 2 cut(s) 57, 221
KasI GGCGCC 1 cut(s) 220
Kzo9I GATC 7 cut(s) 601, 703, 802, 893, 946, 1024, 1171
LmnI GCTCC 2 cut(s) 353, 620
Lsp1109I GCAGC 5 cut(s) 26, 493, 610, 757, 835
LweI GCATC 4 cut(s) 358, 493, 895, 997
MaeI CTAG 4 cut(s) 480, 558, 891, 1038
MaeII ACGT 2 cut(s) 26, 289
MaeIII GTNAC 5 cut(s) 208, 511, 587, 628, 1061
MalI GATC 7 cut(s) 603, 705, 804, 895, 948, 1026, 1173
MbiI CCGCTC 1 cut(s) 1117
MboI GATC 7 cut(s) 601, 703, 802, 893, 946, 1024, 1171
MboII GAAGA 6 cut(s) 337, 464, 545, 548, 777, 872
MfeI CAATTG 2 cut(s) 333, 357
MflI RGATCY 3 cut(s) 601, 802, 946
Mly113I GGCGCC 1 cut(s) 221
MlyI GAGTC 1 cut(s) 429
MmeI TCCRAC 3 cut(s) 120, 629, 882
Mph1103I ATGCAT 1 cut(s) 841
MroXI GAANNNNTTC 2 cut(s) 714, 966
MseI TTAA 3 cut(s) 230, 255, 1085
MslI CAYNNNNRTG 2 cut(s) 1002, 1047
MspI CCGG 2 cut(s) 72, 202
MspR9I CCNGG 3 cut(s) 72, 78, 225
MunI CAATTG 2 cut(s) 333, 357
MvaI CCWGG 2 cut(s) 78, 225
MwoI GCNNNNNNNGC 1 cut(s) 845
NarI GGCGCC 1 cut(s) 221
NciI CCSGG 1 cut(s) 72
NdeII GATC 7 cut(s) 601, 703, 802, 893, 946, 1024, 1171
NlaIV GGNNCC 5 cut(s) 88, 222, 272, 948, 995
NsiI ATGCAT 1 cut(s) 841
NspV TTCGAA 1 cut(s) 65
PaqCI CACCTGC 1 cut(s) 931
PdmI GAANNNNTTC 2 cut(s) 714, 966
PfeI GAWTC 1 cut(s) 62
PinAI ACCGGT 1 cut(s) 201
PkrI GCNGC 7 cut(s) 13, 16, 145, 508, 625, 772, 850
PleI GAGTC 1 cut(s) 428
PluTI GGCGCC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 428
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
Psp6I CCWGG 2 cut(s) 76, 223
PspGI CCWGG 2 cut(s) 76, 223
PspN4I GGNNCC 5 cut(s) 88, 222, 272, 948, 995
PspPI GGNCC 3 cut(s) 74, 271, 994
PspPPI RGGWCCY 1 cut(s) 271
PstI CTGCAG 3 cut(s) 511, 628, 942
PsuI RGATCY 3 cut(s) 601, 802, 946
RsaI GTAC 1 cut(s) 928
RsaNI GTAC 1 cut(s) 927
RseI CAYNNNNRTG 2 cut(s) 1002, 1047
SaqAI TTAA 3 cut(s) 230, 255, 1085
SatI GCNGC 7 cut(s) 12, 15, 144, 507, 624, 771, 849
Sau3AI GATC 7 cut(s) 601, 703, 802, 893, 946, 1024, 1171
Sau96I GGNCC 3 cut(s) 74, 271, 994
SchI GAGTC 1 cut(s) 429
ScrFI CCNGG 3 cut(s) 72, 78, 225
SfaNI GCATC 4 cut(s) 358, 493, 895, 997
SfcI CTRYAG 3 cut(s) 507, 624, 938
SfoI GGCGCC 1 cut(s) 222
SfuI TTCGAA 1 cut(s) 65
SinI GGWCC 2 cut(s) 74, 271
SmiMI CAYNNNNRTG 2 cut(s) 1002, 1047
SmlI CTYRAG 4 cut(s) 275, 317, 614, 674
SmoI CTYRAG 4 cut(s) 275, 317, 614, 674
SsiI CCGC 3 cut(s) 12, 144, 1117
SspDI GGCGCC 1 cut(s) 220
SspI AATATT 1 cut(s) 265
SspMI CTAG 4 cut(s) 480, 558, 891, 1038
StyD4I CCNGG 3 cut(s) 70, 76, 223
StyI CCWWGG 1 cut(s) 1158
TaaI ACNGT 4 cut(s) 528, 793, 900, 1137
TaiI ACGT 2 cut(s) 29, 292
TaqI TCGA 4 cut(s) 46, 65, 238, 960
TauI GCSGC 2 cut(s) 14, 146
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 3 cut(s) 230, 255, 1085
Tru9I TTAA 3 cut(s) 230, 255, 1085
TscAI CASTG 2 cut(s) 490, 1009
TseI GCWGC 5 cut(s) 14, 506, 623, 770, 848
TspDTI ATGAA 4 cut(s) 588, 756, 771, 1114
TspGWI ACGGA 1 cut(s) 1046
TspRI CASTG 2 cut(s) 490, 1009
VpaK11BI GGWCC 2 cut(s) 74, 271
XapI RAATTY 3 cut(s) 48, 347, 809
XbaI TCTAGA 1 cut(s) 890
XmnI GAANNNNTTC 2 cut(s) 714, 966
XspI CTAG 4 cut(s) 480, 558, 891, 1038
Zsp2I ATGCAT 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.