Rh2CG456300

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0008700
Physical Location & Seq
Reverse (-)
61985141 .. 61991096
5956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG456300.1

Sequence Viewer

Length: 855 bp
ATGTTCATCGCCGCAGCAACGACGACGGCGATGACGACGTGTCGTTTCCATACGCTTCGAATTCAATGCGCTGATTCGAAGCCCAGACCCGGGTTCGGAGCCAAAACCAACAACAAGAACAAGAACAAGAACAAGAAAAAGAACAACCTCAACCAGACAAACAAGGCCGCTTCCTCAGTTGAGCAGAAGGGAACTGGTTTTCAACAACGGAAATCAACCACGAACCGGTCTGTGACAAATCAGGCGCCTGGATTAAGTTCCCGATTTGATGGGAAAGTTAAGAGAAATATTGGGGACCTTGAGTTTGAGGAACGTCTGGAAGCAGTTAGAAGTTCAGCACTTGAGCAGAAGAAAACAATTGACAAAGAGGAATTTGGAGCAATTGACTATGATGCACCTGTCAAATCGGAAAAGAAAAAAATTGGACTTGGAACACAGATTGGAGTAGGTGTAGCAGTATTGGTATTTGGTTTGGTTTTTGCTTTGGGGGACTTTCTTCCTTCTAGCAGTGTTAGTCCTACTGAGGATGCTGCAGTAACCAGTAATAAACTGTCCGAAGAAGAGAAAGCTTCACTTCAGACTAGGCTCAAAGAATATGAAGCAACACTTAGTAACAGCCCAAAAGATCCAACTGCTCTTGAGGGAGCTGCAGTAACTTTAGCAGAATTAGGAGAATATACTCAGGCTTCCACTCTGCTTGAGGACTTGAATAAGGAAAAACCAAGTGATCCTGAAGTTTTTCGTCTGCTTGGAGAAGTAAAATATGAACTCAAAGATTATGAAGGGAGTGTTGCTGCATATAAGGTTTCTTCCACGGTCAGTCTTCCAACAACTTTTCTGATTAAGCACAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

284

Amino Acids

30.91

Weight (kDa)

8.97

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_19 PF14559 199 - 251 2.4e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AciI CCGC 2 cut(s) 12, 168
AclWI GGATC 2 cut(s) 620, 722
AcsI RAATTY 2 cut(s) 60, 371
AcuI CTGAAG 2 cut(s) 560, 753
AcyI GRCGYC 1 cut(s) 245
AfiI CCNNNNNNNGG 4 cut(s) 89, 90, 95, 225
AflIII ACRYGT 1 cut(s) 38
AgeI ACCGGT 1 cut(s) 225
AgsI TTSAA 3 cut(s) 65, 203, 709
AhdI GACNNNNNGTC 1 cut(s) 39
AjiI CACGTC 1 cut(s) 39
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 3 cut(s) 569, 647, 852
AluI AGCT 3 cut(s) 569, 647, 852
AlwI GGATC 2 cut(s) 620, 722
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 4 cut(s) 14, 530, 647, 794
ApoI RAATTY 2 cut(s) 60, 371
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AsiGI ACCGGT 1 cut(s) 225
Asp700I GAANNNNTTC 1 cut(s) 738
AspLEI GCGC 2 cut(s) 71, 247
AspS9I GGNCC 1 cut(s) 295
AsuC2I CCSGG 2 cut(s) 90, 91
AsuII TTCGAA 2 cut(s) 58, 77
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 1 cut(s) 295
BanI GGYRCC 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 815
BbvI GCAGC 4 cut(s) 26, 517, 634, 781
BccI CCATC 1 cut(s) 263
BceAI ACGGC 1 cut(s) 42
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BciT130I CCWGG 1 cut(s) 249
BcnI CCSGG 2 cut(s) 90, 91
BfaI CTAG 2 cut(s) 504, 582
BfmI CTRYAG 2 cut(s) 531, 648
BfoI RGCGCY 1 cut(s) 248
BisI GCNGC 6 cut(s) 12, 15, 168, 531, 648, 795
BlsI GCNGC 6 cut(s) 13, 16, 169, 532, 649, 796
Bme1390I CCNGG 3 cut(s) 90, 91, 249
Bme18I GGWCC 1 cut(s) 295
BmeRI GACNNNNNGTC 1 cut(s) 39
BmeT110I CYCGRG 1 cut(s) 89
BmgBI CACGTC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 3 cut(s) 100, 246, 296
BmrFI CCNGG 3 cut(s) 90, 91, 249
BmsI GCATC 2 cut(s) 382, 517
BpiI GAAGAC 1 cut(s) 815
Bpu14I TTCGAA 2 cut(s) 58, 77
BpuEI CTTGAG 4 cut(s) 320, 362, 659, 719
BpuMI CCSGG 2 cut(s) 90, 91
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 89, 813
BsaWI WCCGGW 1 cut(s) 225
BsaXI ACNNNNNCTCC 4 cut(s) 435, 465, 636, 666
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 90, 95, 225
Bse118I RCCGGY 1 cut(s) 225
Bse1I ACTGG 2 cut(s) 199, 540
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 2 cut(s) 89, 813
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 4 cut(s) 89, 90, 95, 225
BseMII CTCAG 3 cut(s) 189, 513, 695
BseNI ACTGG 2 cut(s) 199, 540
BseXI GCAGC 4 cut(s) 26, 517, 634, 781
BshFI GGCC 1 cut(s) 167
BshNI GGYRCC 1 cut(s) 244
BshTI ACCGGT 1 cut(s) 225
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 2 cut(s) 90, 226
BslFI GGGAC 2 cut(s) 308, 503
BslI CCNNNNNNNGG 4 cut(s) 89, 90, 95, 225
BsmFI GGGAC 2 cut(s) 308, 503
BsnI GGCC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 89
Bsp119I TTCGAA 2 cut(s) 58, 77
Bsp143I GATC 2 cut(s) 625, 727
BspACI CCGC 2 cut(s) 12, 168
BspANI GGCC 1 cut(s) 167
BspCNI CTCAG 3 cut(s) 188, 514, 694
BspLI GGNNCC 3 cut(s) 100, 246, 296
BspMAI CTGCAG 2 cut(s) 535, 652
BspPI GGATC 2 cut(s) 620, 722
BspT104I TTCGAA 2 cut(s) 58, 77
BspT107I GGYRCC 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 225
BsrI ACTGG 2 cut(s) 199, 540
BssAI RCCGGY 1 cut(s) 225
BssECI CCNNGG 2 cut(s) 89, 813
BssMI GATC 2 cut(s) 625, 727
BssNI GRCGYC 1 cut(s) 245
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 2 cut(s) 552, 817
Bst6I CTCTTC 1 cut(s) 555
BstACI GRCGYC 1 cut(s) 245
BstBI TTCGAA 2 cut(s) 58, 77
BstDEI CTNAG 4 cut(s) 175, 522, 608, 681
BstDSI CCRYGG 1 cut(s) 813
BstF5I GGATG 1 cut(s) 532
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 2 cut(s) 71, 247
BstKTI GATC 2 cut(s) 628, 730
BstMBI GATC 2 cut(s) 625, 727
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 3 cut(s) 88, 89, 247
BstSFI CTRYAG 2 cut(s) 531, 648
BstV1I GCAGC 4 cut(s) 26, 517, 634, 781
BstV2I GAAGAC 1 cut(s) 815
BstX2I RGATCY 1 cut(s) 625
BstYI RGATCY 1 cut(s) 625
BsuRI GGCC 1 cut(s) 167
BtgI CCRYGG 1 cut(s) 813
BtgZI GCGATG 1 cut(s) 44
BtrI CACGTC 1 cut(s) 39
BtsCI GGATG 1 cut(s) 532
BtsI GCAGTG 1 cut(s) 514
BtsIMutI CAGTG 1 cut(s) 514
CfoI GCGC 2 cut(s) 71, 247
Cfr10I RCCGGY 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 295
Cfr9I CCCGGG 1 cut(s) 89
CspAI ACCGGT 1 cut(s) 225
CspCI CAANNNNNGTGG 2 cut(s) 679, 714
CviJI RGCY 9 cut(s) 82, 101, 167, 569, 586, 618, 647, 686, 852
CviKI_1 RGCY 9 cut(s) 82, 101, 167, 569, 586, 618, 647, 686, 852
DdeI CTNAG 4 cut(s) 175, 522, 608, 681
DinI GGCGCC 1 cut(s) 246
DpnI GATC 2 cut(s) 627, 729
DpnII GATC 2 cut(s) 625, 727
DriI GACNNNNNGTC 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 555
Eam1105I GACNNNNNGTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 555
Eco47I GGWCC 1 cut(s) 295
Eco57I CTGAAG 2 cut(s) 560, 753
Eco88I CYCGRG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 295
EcoRI GAATTC 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 247
EgeI GGCGCC 1 cut(s) 246
EheI GGCGCC 1 cut(s) 246
FaiI YATR 8 cut(s) 51, 390, 597, 678, 765, 780, 799, 801
FalI AAGNNNNNCTT 4 cut(s) 558, 590, 591, 623
FaqI GGGAC 2 cut(s) 308, 503
Fnu4HI GCNGC 6 cut(s) 12, 15, 168, 531, 648, 795
FokI GGATG 1 cut(s) 539
Fsp4HI GCNGC 6 cut(s) 12, 15, 168, 531, 648, 795
FspBI CTAG 2 cut(s) 504, 582
GlaI GCGC 2 cut(s) 70, 246
GluI GCNGC 6 cut(s) 12, 15, 168, 531, 648, 795
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 1 cut(s) 167
HapII CCGG 2 cut(s) 90, 226
HhaI GCGC 2 cut(s) 71, 247
Hin1I GRCGYC 1 cut(s) 245
Hin6I GCGC 2 cut(s) 69, 245
HinP1I GCGC 2 cut(s) 69, 245
HindIII AAGCTT 1 cut(s) 567
HinfI GANTC 1 cut(s) 74
HpaII CCGG 2 cut(s) 90, 226
Hpy188I TCNGA 5 cut(s) 98, 409, 556, 579, 840
Hpy188III TCNNGA 4 cut(s) 261, 317, 638, 731
Hpy99I CGWCG 3 cut(s) 25, 28, 40
HpyAV CCTTC 3 cut(s) 181, 510, 776
HpyCH4III ACNGT 2 cut(s) 552, 817
HpyCH4IV ACGT 2 cut(s) 38, 313
HpyCH4V TGCA 4 cut(s) 395, 533, 650, 797
HpyF3I CTNAG 4 cut(s) 175, 522, 608, 681
HpySE526I ACGT 2 cut(s) 38, 313
Hsp92I GRCGYC 1 cut(s) 245
HspAI GCGC 2 cut(s) 69, 245
KasI GGCGCC 1 cut(s) 244
Kzo9I GATC 2 cut(s) 625, 727
LmnI GCTCC 3 cut(s) 98, 377, 644
Lsp1109I GCAGC 4 cut(s) 26, 517, 634, 781
LweI GCATC 2 cut(s) 382, 517
MaeI CTAG 2 cut(s) 504, 582
MaeII ACGT 2 cut(s) 38, 313
MaeIII GTNAC 4 cut(s) 232, 535, 611, 652
MalI GATC 2 cut(s) 627, 729
MboI GATC 2 cut(s) 625, 727
MboII GAAGA 6 cut(s) 361, 488, 569, 572, 801, 815
MfeI CAATTG 2 cut(s) 357, 381
MflI RGATCY 1 cut(s) 625
MluCI AATT 6 cut(s) 60, 357, 371, 381, 420, 665
Mly113I GGCGCC 1 cut(s) 245
MmeI TCCRAC 2 cut(s) 653, 851
MnlI CCTC 7 cut(s) 158, 184, 301, 361, 517, 634, 694
MroXI GAANNNNTTC 1 cut(s) 738
MseI TTAA 3 cut(s) 254, 279, 843
MspI CCGG 2 cut(s) 90, 226
MspR9I CCNGG 3 cut(s) 90, 91, 249
MunI CAATTG 2 cut(s) 357, 381
MvaI CCWGG 1 cut(s) 249
NarI GGCGCC 1 cut(s) 245
NciI CCSGG 2 cut(s) 90, 91
NdeII GATC 2 cut(s) 625, 727
NlaIV GGNNCC 3 cut(s) 100, 246, 296
NmuCI GTSAC 1 cut(s) 232
NspV TTCGAA 2 cut(s) 58, 77
PcsI WCGNNNNNNNCGW 2 cut(s) 26, 32
PdmI GAANNNNTTC 1 cut(s) 738
PfeI GAWTC 1 cut(s) 74
PinAI ACCGGT 1 cut(s) 225
PkrI GCNGC 6 cut(s) 13, 16, 169, 532, 649, 796
PluTI GGCGCC 1 cut(s) 248
PpuMI RGGWCCY 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 3 cut(s) 100, 246, 296
PspPI GGNCC 1 cut(s) 295
PspPPI RGGWCCY 1 cut(s) 295
PstI CTGCAG 2 cut(s) 535, 652
PsuI RGATCY 1 cut(s) 625
SaqAI TTAA 3 cut(s) 254, 279, 843
SatI GCNGC 6 cut(s) 12, 15, 168, 531, 648, 795
Sau3AI GATC 2 cut(s) 625, 727
Sau96I GGNCC 1 cut(s) 295
ScrFI CCNGG 3 cut(s) 90, 91, 249
SfaNI GCATC 2 cut(s) 382, 517
SfcI CTRYAG 2 cut(s) 531, 648
SfoI GGCGCC 1 cut(s) 246
SfuI TTCGAA 2 cut(s) 58, 77
SinI GGWCC 1 cut(s) 295
SmaI CCCGGG 1 cut(s) 91
SmlI CTYRAG 4 cut(s) 299, 341, 638, 698
SmoI CTYRAG 4 cut(s) 299, 341, 638, 698
Sse9I AATT 6 cut(s) 60, 357, 371, 381, 420, 665
SsiI CCGC 2 cut(s) 12, 168
SspDI GGCGCC 1 cut(s) 244
SspI AATATT 1 cut(s) 289
SspMI CTAG 2 cut(s) 504, 582
StyD4I CCNGG 3 cut(s) 88, 89, 247
TaaI ACNGT 2 cut(s) 552, 817
TaiI ACGT 2 cut(s) 41, 316
TaqI TCGA 2 cut(s) 58, 77
TasI AATT 6 cut(s) 60, 357, 371, 381, 420, 665
TauI GCSGC 2 cut(s) 14, 170
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 3 cut(s) 254, 279, 843
Tru9I TTAA 3 cut(s) 254, 279, 843
TscAI CASTG 1 cut(s) 514
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 4 cut(s) 14, 530, 647, 794
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 3 cut(s) 612, 780, 795
TspGWI ACGGA 1 cut(s) 223
TspMI CCCGGG 1 cut(s) 89
TspRI CASTG 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 2 cut(s) 60, 371
XmaI CCCGGG 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 738
XspI CTAG 2 cut(s) 504, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.