Rh2DG491700

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008700
Physical Location & Seq
Reverse (-)
71206464 .. 71212433
5970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG491700.1

Sequence Viewer

Length: 942 bp
ATGTTCATCGCCGCAGCAACGACGACGTGTCGTTTCCATACGCCTCGAATTCAATGCGCTGATTCGAAGCCCGGACCTGGGTTCGGAACCAAATCCAACAACAAGAACAAGAACAAGAAAAAGAACAACCTCAACCAGACAAACAAGGCCGCTACCTCAGTTGAGCAGAAGGGAACTGGTTTTCAACAAAGGAAATCAACCACGAACCGGTCTGTTACAAATCAGGCGCCTGGATTAAGTTCCCGATTTGATGGGAAAGTTAAGAGAAATATTGGGGACCTTGAGTTTGAGGAACGTCTGGAAGCAGTTAGAAGTTCAGCACTTGAGCAGAAGAAAACAATTGACAAAGAGGAATTTGGAGCAATTGACTATGATGCACCTGTCAAATCGGAAAAGAAAAAAATTGGACTTGGAACACAGATTGGAGTCGGTGTAGCAGTATTGGTATTTGGTTTGGTTTTTGCTTTGGGGGACTTTCTTCCTTCTAGCAGTGTTAGTCCTACTGAGGATGCTGCAGTAACCAGTAATAAACTGTCCGAAGAAGAGAAAGCTTCACTTCAGACTAGGCTCAAAGAATATGAAGCAACACTTAGTAACAGCCCAAAAGATCCAACTGCTCTTGAGGGAGCTGCAGTAACTTTAGCAGAATTAGGAGAATATACTCGGGCTTCCACTCTGCTTGAGGACTTGACTAAGGAAAAACCAAGTGATCCTGAAGTTTTTCGTCTGCTTGGAGAAGTAAAATATGAACTCAAAGATTATGAAGGGAGTGTTGCTGCATATAAGGTTTCTTCCACGGTGTCCAAAGATATCAAATTTGAAGTTATGCGTGGCCTTACAAATGCATTGCTTGCTGCTAAAAGACCAGATGAGGTATTCCATTGTTCATTCACTTATGCTAACTCTCATTTCAGAATTCTTCTCTCATTGCATTCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

313

Amino Acids

34.22

Weight (kDa)

8.83

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_19 PF14559 193 - 245 3.7e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 226
AciI CCGC 2 cut(s) 12, 150
AclWI GGATC 2 cut(s) 602, 704
AcsI RAATTY 4 cut(s) 48, 353, 815, 915
AcuI CTGAAG 2 cut(s) 542, 735
AcyI GRCGYC 1 cut(s) 227
AfiI CCNNNNNNNGG 4 cut(s) 77, 78, 83, 207
AflIII ACRYGT 1 cut(s) 26
AgeI ACCGGT 1 cut(s) 207
AgsI TTSAA 3 cut(s) 53, 185, 821
AhdI GACNNNNNGTC 1 cut(s) 27
AjiI CACGTC 1 cut(s) 27
AjnI CCWGG 2 cut(s) 76, 229
AluBI AGCT 2 cut(s) 551, 629
AluI AGCT 2 cut(s) 551, 629
AlwI GGATC 2 cut(s) 602, 704
Ama87I CYCGRG 1 cut(s) 663
AoxI GGCC 2 cut(s) 147, 832
ApeKI GCWGC 5 cut(s) 14, 512, 629, 776, 854
ApoI RAATTY 4 cut(s) 48, 353, 815, 915
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AsiGI ACCGGT 1 cut(s) 207
Asp700I GAANNNNTTC 1 cut(s) 720
AspLEI GCGC 2 cut(s) 59, 229
AspS9I GGNCC 2 cut(s) 74, 277
AsuC2I CCSGG 1 cut(s) 72
AsuII TTCGAA 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 663
AvaII GGWCC 2 cut(s) 74, 277
BanI GGYRCC 1 cut(s) 226
BbvI GCAGC 5 cut(s) 26, 499, 616, 763, 841
BccI CCATC 1 cut(s) 245
BcgI CGANNNNNNTGC 2 cut(s) 36, 70
BciT130I CCWGG 2 cut(s) 78, 231
BcnI CCSGG 1 cut(s) 72
BfaI CTAG 2 cut(s) 486, 564
BfmI CTRYAG 2 cut(s) 513, 630
BfoI RGCGCY 1 cut(s) 230
BisI GCNGC 7 cut(s) 12, 15, 150, 513, 630, 777, 855
BlsI GCNGC 7 cut(s) 13, 16, 151, 514, 631, 778, 856
Bme1390I CCNGG 3 cut(s) 72, 78, 231
Bme18I GGWCC 2 cut(s) 74, 277
BmeRI GACNNNNNGTC 1 cut(s) 27
BmeT110I CYCGRG 1 cut(s) 663
BmgBI CACGTC 1 cut(s) 27
BmgT120I GGNCC 2 cut(s) 74, 277
BmiI GGNNCC 3 cut(s) 88, 228, 278
BmrFI CCNGG 3 cut(s) 72, 78, 231
BmsI GCATC 2 cut(s) 364, 499
Bpu14I TTCGAA 1 cut(s) 65
BpuEI CTTGAG 4 cut(s) 302, 344, 641, 701
BpuMI CCSGG 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 77, 795
BsaWI WCCGGW 1 cut(s) 207
BsaXI ACNNNNNCTCC 4 cut(s) 417, 447, 618, 648
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 78, 83, 207
Bse118I RCCGGY 1 cut(s) 207
Bse1I ACTGG 2 cut(s) 181, 522
Bse3DI GCAATG 2 cut(s) 845, 926
BseBI CCWGG 2 cut(s) 78, 231
BseDI CCNNGG 2 cut(s) 77, 795
BseGI GGATG 1 cut(s) 514
BseLI CCNNNNNNNGG 4 cut(s) 77, 78, 83, 207
BseMI GCAATG 2 cut(s) 845, 926
BseMII CTCAG 2 cut(s) 171, 495
BseNI ACTGG 2 cut(s) 181, 522
BseXI GCAGC 5 cut(s) 26, 499, 616, 763, 841
BshFI GGCC 2 cut(s) 149, 834
BshNI GGYRCC 1 cut(s) 226
BshTI ACCGGT 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 663
BsiSI CCGG 2 cut(s) 72, 208
BslFI GGGAC 2 cut(s) 290, 485
BslI CCNNNNNNNGG 4 cut(s) 77, 78, 83, 207
BsmFI GGGAC 2 cut(s) 290, 485
BsmI GAATGC 1 cut(s) 931
BsnI GGCC 2 cut(s) 149, 834
BsoBI CYCGRG 1 cut(s) 663
Bsp119I TTCGAA 1 cut(s) 65
Bsp143I GATC 2 cut(s) 607, 709
BspACI CCGC 2 cut(s) 12, 150
BspANI GGCC 2 cut(s) 149, 834
BspCNI CTCAG 2 cut(s) 170, 496
BspLI GGNNCC 3 cut(s) 88, 228, 278
BspMAI CTGCAG 2 cut(s) 517, 634
BspPI GGATC 2 cut(s) 602, 704
BspT104I TTCGAA 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 226
BsrDI GCAATG 2 cut(s) 845, 926
BsrFI RCCGGY 1 cut(s) 207
BsrI ACTGG 2 cut(s) 181, 522
BssAI RCCGGY 1 cut(s) 207
BssECI CCNNGG 2 cut(s) 77, 795
BssMI GATC 2 cut(s) 607, 709
BssNI GRCGYC 1 cut(s) 227
Bst2UI CCWGG 2 cut(s) 78, 231
Bst4CI ACNGT 2 cut(s) 534, 799
Bst6I CTCTTC 1 cut(s) 537
BstACI GRCGYC 1 cut(s) 227
BstAPI GCANNNNNTGC 1 cut(s) 851
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 852
BstDEI CTNAG 4 cut(s) 157, 504, 590, 693
BstDSI CCRYGG 1 cut(s) 795
BstF5I GGATG 1 cut(s) 514
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 2 cut(s) 59, 229
BstKTI GATC 2 cut(s) 610, 712
BstMBI GATC 2 cut(s) 607, 709
BstMWI GCNNNNNNNGC 1 cut(s) 851
BstNI CCWGG 2 cut(s) 78, 231
BstSCI CCNGG 3 cut(s) 70, 76, 229
BstSFI CTRYAG 2 cut(s) 513, 630
BstV1I GCAGC 5 cut(s) 26, 499, 616, 763, 841
BstX2I RGATCY 1 cut(s) 607
BstYI RGATCY 1 cut(s) 607
BsuRI GGCC 2 cut(s) 149, 834
BtgI CCRYGG 1 cut(s) 795
BtrI CACGTC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 514
BtsI GCAGTG 1 cut(s) 496
BtsIMutI CAGTG 1 cut(s) 496
Cac8I GCNNGC 1 cut(s) 852
CfoI GCGC 2 cut(s) 59, 229
Cfr10I RCCGGY 1 cut(s) 207
Cfr13I GGNCC 2 cut(s) 74, 277
CspAI ACCGGT 1 cut(s) 207
CspCI CAANNNNNGTGG 2 cut(s) 661, 696
CviJI RGCY 8 cut(s) 70, 149, 551, 568, 600, 629, 668, 834
CviKI_1 RGCY 8 cut(s) 70, 149, 551, 568, 600, 629, 668, 834
DdeI CTNAG 4 cut(s) 157, 504, 590, 693
DinI GGCGCC 1 cut(s) 228
DpnI GATC 2 cut(s) 609, 711
DpnII GATC 2 cut(s) 607, 709
DriI GACNNNNNGTC 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 537
Eam1105I GACNNNNNGTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 537
Eco32I GATATC 1 cut(s) 811
Eco47I GGWCC 2 cut(s) 74, 277
Eco57I CTGAAG 2 cut(s) 542, 735
Eco88I CYCGRG 1 cut(s) 663
EcoO109I RGGNCCY 1 cut(s) 277
EcoRI GAATTC 2 cut(s) 48, 915
EcoRII CCWGG 2 cut(s) 76, 229
EcoRV GATATC 1 cut(s) 811
EcoT22I ATGCAT 1 cut(s) 847
EgeI GGCGCC 1 cut(s) 228
EheI GGCGCC 1 cut(s) 228
FalI AAGNNNNNCTT 4 cut(s) 540, 572, 573, 605
FaqI GGGAC 2 cut(s) 290, 485
Fnu4HI GCNGC 7 cut(s) 12, 15, 150, 513, 630, 777, 855
FokI GGATG 1 cut(s) 521
Fsp4HI GCNGC 7 cut(s) 12, 15, 150, 513, 630, 777, 855
FspBI CTAG 2 cut(s) 486, 564
GlaI GCGC 2 cut(s) 58, 228
GluI GCNGC 7 cut(s) 12, 15, 150, 513, 630, 777, 855
HaeII RGCGCY 1 cut(s) 230
HaeIII GGCC 2 cut(s) 149, 834
HapII CCGG 2 cut(s) 72, 208
HhaI GCGC 2 cut(s) 59, 229
Hin1I GRCGYC 1 cut(s) 227
Hin6I GCGC 2 cut(s) 57, 227
HinP1I GCGC 2 cut(s) 57, 227
HindIII AAGCTT 1 cut(s) 549
HinfI GANTC 2 cut(s) 62, 426
HpaII CCGG 2 cut(s) 72, 208
Hpy188I TCNGA 5 cut(s) 86, 391, 538, 561, 914
Hpy188III TCNNGA 4 cut(s) 243, 299, 620, 713
Hpy99I CGWCG 2 cut(s) 25, 28
HpyAV CCTTC 3 cut(s) 163, 492, 758
HpyCH4III ACNGT 2 cut(s) 534, 799
HpyCH4IV ACGT 2 cut(s) 26, 295
HpyCH4V TGCA 6 cut(s) 377, 515, 632, 779, 845, 931
HpyF10VI GCNNNNNNNGC 1 cut(s) 851
HpyF3I CTNAG 4 cut(s) 157, 504, 590, 693
HpySE526I ACGT 2 cut(s) 26, 295
Hsp92I GRCGYC 1 cut(s) 227
HspAI GCGC 2 cut(s) 57, 227
KasI GGCGCC 1 cut(s) 226
Kzo9I GATC 2 cut(s) 607, 709
LmnI GCTCC 2 cut(s) 359, 626
Lsp1109I GCAGC 5 cut(s) 26, 499, 616, 763, 841
LweI GCATC 2 cut(s) 364, 499
MaeI CTAG 2 cut(s) 486, 564
MaeII ACGT 2 cut(s) 26, 295
MaeIII GTNAC 4 cut(s) 214, 517, 593, 634
MalI GATC 2 cut(s) 609, 711
MboI GATC 2 cut(s) 607, 709
MboII GAAGA 6 cut(s) 343, 470, 551, 554, 783, 911
MfeI CAATTG 2 cut(s) 339, 363
MflI RGATCY 1 cut(s) 607
MluCI AATT 8 cut(s) 48, 339, 353, 363, 402, 647, 815, 915
Mly113I GGCGCC 1 cut(s) 227
MlyI GAGTC 1 cut(s) 435
MmeI TCCRAC 2 cut(s) 120, 635
MnlI CCTC 9 cut(s) 54, 140, 166, 283, 343, 499, 616, 676, 865
Mph1103I ATGCAT 1 cut(s) 847
MroXI GAANNNNTTC 1 cut(s) 720
MseI TTAA 2 cut(s) 236, 261
MspI CCGG 2 cut(s) 72, 208
MspR9I CCNGG 3 cut(s) 72, 78, 231
MunI CAATTG 2 cut(s) 339, 363
Mva1269I GAATGC 1 cut(s) 931
MvaI CCWGG 2 cut(s) 78, 231
MwoI GCNNNNNNNGC 1 cut(s) 851
NarI GGCGCC 1 cut(s) 227
NciI CCSGG 1 cut(s) 72
NdeII GATC 2 cut(s) 607, 709
NlaIV GGNNCC 3 cut(s) 88, 228, 278
NsiI ATGCAT 1 cut(s) 847
NspV TTCGAA 1 cut(s) 65
PctI GAATGC 1 cut(s) 931
PdmI GAANNNNTTC 1 cut(s) 720
PfeI GAWTC 1 cut(s) 62
PinAI ACCGGT 1 cut(s) 207
PkrI GCNGC 7 cut(s) 13, 16, 151, 514, 631, 778, 856
PleI GAGTC 1 cut(s) 434
PluTI GGCGCC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 434
PpuMI RGGWCCY 1 cut(s) 277
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 2 cut(s) 76, 229
PspGI CCWGG 2 cut(s) 76, 229
PspN4I GGNNCC 3 cut(s) 88, 228, 278
PspPI GGNCC 2 cut(s) 74, 277
PspPPI RGGWCCY 1 cut(s) 277
PstI CTGCAG 2 cut(s) 517, 634
PsuI RGATCY 1 cut(s) 607
SaqAI TTAA 2 cut(s) 236, 261
SatI GCNGC 7 cut(s) 12, 15, 150, 513, 630, 777, 855
Sau3AI GATC 2 cut(s) 607, 709
Sau96I GGNCC 2 cut(s) 74, 277
SchI GAGTC 1 cut(s) 435
ScrFI CCNGG 3 cut(s) 72, 78, 231
SfaNI GCATC 2 cut(s) 364, 499
SfcI CTRYAG 2 cut(s) 513, 630
SfoI GGCGCC 1 cut(s) 228
SfuI TTCGAA 1 cut(s) 65
SinI GGWCC 2 cut(s) 74, 277
SmlI CTYRAG 4 cut(s) 281, 323, 620, 680
SmoI CTYRAG 4 cut(s) 281, 323, 620, 680
Sse9I AATT 8 cut(s) 48, 339, 353, 363, 402, 647, 815, 915
SsiI CCGC 2 cut(s) 12, 150
SspDI GGCGCC 1 cut(s) 226
SspI AATATT 1 cut(s) 271
SspMI CTAG 2 cut(s) 486, 564
StyD4I CCNGG 3 cut(s) 70, 76, 229
TaaI ACNGT 2 cut(s) 534, 799
TaiI ACGT 2 cut(s) 29, 298
TaqI TCGA 2 cut(s) 46, 65
TasI AATT 8 cut(s) 48, 339, 353, 363, 402, 647, 815, 915
TauI GCSGC 2 cut(s) 14, 152
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 2 cut(s) 236, 261
Tru9I TTAA 2 cut(s) 236, 261
TscAI CASTG 1 cut(s) 496
TseI GCWGC 5 cut(s) 14, 512, 629, 776, 854
TspDTI ATGAA 4 cut(s) 594, 762, 777, 876
TspRI CASTG 1 cut(s) 496
VpaK11BI GGWCC 2 cut(s) 74, 277
XapI RAATTY 4 cut(s) 48, 353, 815, 915
XmnI GAANNNNTTC 1 cut(s) 720
XspI CTAG 2 cut(s) 486, 564
Zsp2I ATGCAT 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.