Rmu_sc0018207.1_g000001

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018207.1
OG0008700
Physical Location & Seq
Forward (+)
1 .. 2550
2550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018207.1_g000001.1.cds

Sequence Viewer

Length: 614 bp
aggcgcctggattaagttctcgatttgatgggaaagttaagagaaatattggggaccttgagtttgaggaacgtctggaagcagttagaagttcagcacttgagcagaagaaaacaattgacaaagaggaatttggagcaattgactatgatgcacctgtcaaatcggaaaagaaaaaaattggacttggaacacagattggagtcggtgtagcagtattggtatttggtttggtttttgctttgggggactttcttccttctagcagtgttagtcctactgaggatgctgcagtaaccaataataaactgtccgaagaagagaaagcttcacttcagactaggctcaaagaatatgaagcaacacttagtaacaccccaaaagatccaactgctcttgagggagctgcagtaactttagcagaattaggagaatatactcgggcttccactctgcttgaggacttgactaaggaaaaaccaagtgatcctgaagtttttcgtctgcttggagaagtaaaatatgaactcaaagattatgaagggagtgttgctgcatataaggtttcttccacggtcagtcttccaacaacttttctgattaagcacagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

203

Amino Acids

22.02

Weight (kDa)

4.93

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 3
AclWI GGATC 2 cut(s) 379, 481
AcsI RAATTY 1 cut(s) 130
AcuI CTGAAG 2 cut(s) 319, 512
AcyI GRCGYC 1 cut(s) 4
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 3 cut(s) 328, 406, 611
AluI AGCT 3 cut(s) 328, 406, 611
AlwI GGATC 2 cut(s) 379, 481
Ama87I CYCGRG 1 cut(s) 440
ApeKI GCWGC 3 cut(s) 289, 406, 553
ApoI RAATTY 1 cut(s) 130
ArsI GACNNNNNNTTYG 2 cut(s) 46, 78
Asp700I GAANNNNTTC 1 cut(s) 497
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 54
AvaI CYCGRG 1 cut(s) 440
AvaII GGWCC 1 cut(s) 54
BanI GGYRCC 1 cut(s) 3
BbsI GAAGAC 1 cut(s) 574
BbvI GCAGC 3 cut(s) 276, 393, 540
BccI CCATC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 8
BfaI CTAG 2 cut(s) 263, 341
BfmI CTRYAG 2 cut(s) 290, 407
BfoI RGCGCY 1 cut(s) 7
BisI GCNGC 3 cut(s) 290, 407, 554
BlsI GCNGC 3 cut(s) 291, 408, 555
Bme1390I CCNGG 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 54
BmeT110I CYCGRG 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 2 cut(s) 5, 55
BmrFI CCNGG 1 cut(s) 8
BmsI GCATC 2 cut(s) 141, 276
BpiI GAAGAC 1 cut(s) 574
BpuEI CTTGAG 4 cut(s) 79, 121, 418, 478
BsaHI GRCGYC 1 cut(s) 4
BsaJI CCNNGG 1 cut(s) 572
BsaXI ACNNNNNCTCC 4 cut(s) 194, 224, 395, 425
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 572
BseGI GGATG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 272
BseXI GCAGC 3 cut(s) 276, 393, 540
BshNI GGYRCC 1 cut(s) 3
BsiHKCI CYCGRG 1 cut(s) 440
BslFI GGGAC 2 cut(s) 67, 262
BsmFI GGGAC 2 cut(s) 67, 262
BsoBI CYCGRG 1 cut(s) 440
Bsp143I GATC 2 cut(s) 384, 486
BspCNI CTCAG 1 cut(s) 273
BspLI GGNNCC 2 cut(s) 5, 55
BspMAI CTGCAG 2 cut(s) 294, 411
BspPI GGATC 2 cut(s) 379, 481
BspT107I GGYRCC 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 572
BssMI GATC 2 cut(s) 384, 486
BssNI GRCGYC 1 cut(s) 4
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 2 cut(s) 311, 576
Bst6I CTCTTC 1 cut(s) 314
BstACI GRCGYC 1 cut(s) 4
BstDEI CTNAG 3 cut(s) 281, 367, 470
BstDSI CCRYGG 1 cut(s) 572
BstF5I GGATG 1 cut(s) 291
BstH2I RGCGCY 1 cut(s) 7
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 387, 489
BstMBI GATC 2 cut(s) 384, 486
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 6
BstSFI CTRYAG 2 cut(s) 290, 407
BstV1I GCAGC 3 cut(s) 276, 393, 540
BstV2I GAAGAC 1 cut(s) 574
BstX2I RGATCY 1 cut(s) 384
BstYI RGATCY 1 cut(s) 384
BtgI CCRYGG 1 cut(s) 572
BtsCI GGATG 1 cut(s) 291
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 273
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 54
CspCI CAANNNNNGTGG 2 cut(s) 438, 473
CviJI RGCY 5 cut(s) 328, 345, 406, 445, 611
CviKI_1 RGCY 5 cut(s) 328, 345, 406, 445, 611
DdeI CTNAG 3 cut(s) 281, 367, 470
DinI GGCGCC 1 cut(s) 5
DpnI GATC 2 cut(s) 386, 488
DpnII GATC 2 cut(s) 384, 486
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
Eco47I GGWCC 1 cut(s) 54
Eco57I CTGAAG 2 cut(s) 319, 512
Eco88I CYCGRG 1 cut(s) 440
EcoO109I RGGNCCY 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 5
EheI GGCGCC 1 cut(s) 5
FaiI YATR 7 cut(s) 149, 356, 437, 524, 539, 558, 560
FalI AAGNNNNNCTT 4 cut(s) 317, 349, 350, 382
FaqI GGGAC 2 cut(s) 67, 262
Fnu4HI GCNGC 3 cut(s) 290, 407, 554
FokI GGATG 1 cut(s) 298
Fsp4HI GCNGC 3 cut(s) 290, 407, 554
FspBI CTAG 2 cut(s) 263, 341
GlaI GCGC 1 cut(s) 5
GluI GCNGC 3 cut(s) 290, 407, 554
HaeII RGCGCY 1 cut(s) 7
HhaI GCGC 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 4
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 1 cut(s) 203
Hpy188I TCNGA 4 cut(s) 168, 315, 338, 599
Hpy188III TCNNGA 4 cut(s) 20, 76, 397, 490
HpyAV CCTTC 2 cut(s) 269, 535
HpyCH4III ACNGT 2 cut(s) 311, 576
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 4 cut(s) 154, 292, 409, 556
HpyF3I CTNAG 3 cut(s) 281, 367, 470
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 4
HspAI GCGC 1 cut(s) 4
KasI GGCGCC 1 cut(s) 3
Kzo9I GATC 2 cut(s) 384, 486
LmnI GCTCC 2 cut(s) 136, 403
LpnPI CCDG 4 cut(s) 20, 61, 170, 503
Lsp1109I GCAGC 3 cut(s) 276, 393, 540
LweI GCATC 2 cut(s) 141, 276
MaeI CTAG 2 cut(s) 263, 341
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 3 cut(s) 294, 370, 411
MalI GATC 2 cut(s) 386, 488
MboI GATC 2 cut(s) 384, 486
MboII GAAGA 6 cut(s) 120, 247, 328, 331, 560, 574
MfeI CAATTG 2 cut(s) 116, 140
MflI RGATCY 1 cut(s) 384
MluCI AATT 5 cut(s) 116, 130, 140, 179, 424
Mly113I GGCGCC 1 cut(s) 4
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 2 cut(s) 412, 610
MnlI CCTC 5 cut(s) 60, 120, 276, 393, 453
MroXI GAANNNNTTC 1 cut(s) 497
MseI TTAA 3 cut(s) 13, 38, 602
MspR9I CCNGG 1 cut(s) 8
MunI CAATTG 2 cut(s) 116, 140
MvaI CCWGG 1 cut(s) 8
NarI GGCGCC 1 cut(s) 4
NdeII GATC 2 cut(s) 384, 486
NlaIV GGNNCC 2 cut(s) 5, 55
PdmI GAANNNNTTC 1 cut(s) 497
PkrI GCNGC 3 cut(s) 291, 408, 555
PleI GAGTC 1 cut(s) 211
PluTI GGCGCC 1 cut(s) 7
PpsI GAGTC 1 cut(s) 211
PpuMI RGGWCCY 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 2 cut(s) 5, 55
PspPI GGNCC 1 cut(s) 54
PspPPI RGGWCCY 1 cut(s) 54
PstI CTGCAG 2 cut(s) 294, 411
PsuI RGATCY 1 cut(s) 384
SaqAI TTAA 3 cut(s) 13, 38, 602
SatI GCNGC 3 cut(s) 290, 407, 554
Sau3AI GATC 2 cut(s) 384, 486
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 8
SetI ASST 7 cut(s) 59, 75, 159, 330, 408, 566, 613
SfaNI GCATC 2 cut(s) 141, 276
SfcI CTRYAG 2 cut(s) 290, 407
SfoI GGCGCC 1 cut(s) 5
SinI GGWCC 1 cut(s) 54
SmlI CTYRAG 4 cut(s) 58, 100, 397, 457
SmoI CTYRAG 4 cut(s) 58, 100, 397, 457
Sse9I AATT 5 cut(s) 116, 130, 140, 179, 424
SspDI GGCGCC 1 cut(s) 3
SspI AATATT 1 cut(s) 48
SspMI CTAG 2 cut(s) 263, 341
StyD4I CCNGG 1 cut(s) 6
TaaI ACNGT 2 cut(s) 311, 576
TaiI ACGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 21
TasI AATT 5 cut(s) 116, 130, 140, 179, 424
Tru1I TTAA 3 cut(s) 13, 38, 602
Tru9I TTAA 3 cut(s) 13, 38, 602
TscAI CASTG 1 cut(s) 273
TseI GCWGC 3 cut(s) 289, 406, 553
TspDTI ATGAA 3 cut(s) 371, 539, 554
TspRI CASTG 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 54
XapI RAATTY 1 cut(s) 130
XmnI GAANNNNTTC 1 cut(s) 497
XspI CTAG 2 cut(s) 263, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.