Rorug02G0409900

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008700
Physical Location & Seq
Reverse (-)
52507893 .. 52508937
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0409900.1

Sequence Viewer

Length: 798 bp
ATGCAGGTTAATATGGAGAACAACGAAGCAGGTCTACGCTACACTGACCATCTGTACCACAGCTCGTTACCATCAGACGAAGAAGTATCTGATGATGATTGCTTATTACGAATTGGGGAAGATAAGGAAGGGTTATTTTGTGATGGAGGAGAGAAAGGGCTTGGTCAAACATCTGAAATTGGTAATGATAAATGTTATATGATGGATATGGAGATGTTAGAAGGAACGAATGTAGGTGAGTGTGTAGACTTAAATGGCAAGGATTACAGTAATTTGAATATGGATGACATGAAGGATGTTGTGTTCAGCAGCGTATGTGAAGCTGAAAAGTTCTATCATTTATACTCTCGTGTTATTGGATTCAGCACAAGGAGGGACAGGAAGGTTAGAGCATATTGTTCCGAATTTGTCATAAGAAGGGAGTGGGGCAAAGCAACAATTAAGGTCAAGAAACAGGGAGTGAAAGAAAAGGGGAAGAGTCCGATCCAAGCTGAGAAGAAGAAGATGAAGAGGAATCAATGCCCAAGGGGTAAAAGATATAGCCGAGTTGGATGCATGGCTGCATTTGGAATTCGATACTGCGAGGAAAGGAAGAAGTATTTCGTATCAAAGTTCATAACCAATCACAATCATGATGTTGCTGTTTCAGAAGAGGTTCAGTTCCTTCGTTCTCACCGAGGAGTGAATGACAGCGTCATTGCCCAGGTTGAGGCTCTACAGAAAGCACAAGTGCACATAAGCCGGATATATGATGTAATACCCCGAAAAAAATCCAAATTAAATTCCGTGGATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

265

Amino Acids

30.46

Weight (kDa)

8.46

Isoelectric Point (pI)

36.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 110 - 213 4.8e-08 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 20
AccI GTMKAC 2 cut(s) 34, 246
AclWI GGATC 1 cut(s) 478
AcsI RAATTY 3 cut(s) 404, 570, 781
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 709
AgsI TTSAA 1 cut(s) 277
AjnI CCWGG 1 cut(s) 702
AloI GAACNNNNNNTCC 2 cut(s) 287, 319
AluBI AGCT 3 cut(s) 63, 323, 491
AluI AGCT 3 cut(s) 63, 323, 491
Alw21I GWGCWC 1 cut(s) 735
Alw44I GTGCAC 1 cut(s) 731
AlwI GGATC 1 cut(s) 478
ApaLI GTGCAC 1 cut(s) 731
ApeKI GCWGC 2 cut(s) 309, 560
ApoI RAATTY 3 cut(s) 404, 570, 781
Asp700I GAANNNNTTC 2 cut(s) 599, 654
AsuHPI GGTGA 2 cut(s) 248, 665
BaeGI GKGCMC 1 cut(s) 735
BarI GAAGNNNNNNTAC 2 cut(s) 18, 50
BauI CACGAG 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 735
BbvI GCAGC 2 cut(s) 321, 547
BccI CCATC 4 cut(s) 57, 79, 137, 196
BcgI CGANNNNNNTGC 2 cut(s) 534, 568
BciT130I CCWGG 1 cut(s) 704
BfmI CTRYAG 1 cut(s) 716
BfuAI ACCTGC 1 cut(s) 20
BisI GCNGC 2 cut(s) 310, 561
BlsI GCNGC 2 cut(s) 311, 562
Bme1390I CCNGG 1 cut(s) 704
BmrFI CCNGG 1 cut(s) 704
BmsI GCATC 1 cut(s) 542
BsaJI CCNNGG 4 cut(s) 524, 676, 702, 786
Bsc4I CCNNNNNNNGG 1 cut(s) 709
Bse3DI GCAATG 1 cut(s) 696
BseBI CCWGG 1 cut(s) 704
BseDI CCNNGG 4 cut(s) 524, 676, 702, 786
BseGI GGATG 3 cut(s) 289, 301, 557
BseLI CCNNNNNNNGG 1 cut(s) 709
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 1 cut(s) 483
BseRI GAGGAG 2 cut(s) 162, 693
BseSI GKGCMC 1 cut(s) 735
BseXI GCAGC 2 cut(s) 321, 547
BsiHKAI GWGCWC 1 cut(s) 735
BsiSI CCGG 1 cut(s) 742
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 1 cut(s) 709
BsmFI GGGAC 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 735
Bsp143I GATC 1 cut(s) 483
BspCNI CTCAG 1 cut(s) 484
BspHI TCATGA 1 cut(s) 631
BspMI ACCTGC 1 cut(s) 20
BspPI GGATC 1 cut(s) 478
BsrDI GCAATG 1 cut(s) 696
BssECI CCNNGG 4 cut(s) 524, 676, 702, 786
BssMI GATC 1 cut(s) 483
BssSI CACGAG 1 cut(s) 348
BssT1I CCWWGG 1 cut(s) 524
Bst2BI CACGAG 1 cut(s) 348
Bst2UI CCWGG 1 cut(s) 704
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 3 cut(s) 470, 503, 645
BstDEI CTNAG 1 cut(s) 492
BstDSI CCRYGG 1 cut(s) 786
BstF5I GGATG 3 cut(s) 289, 301, 557
BstKTI GATC 1 cut(s) 486
BstMBI GATC 1 cut(s) 483
BstNI CCWGG 1 cut(s) 704
BstSCI CCNGG 1 cut(s) 702
BstSFI CTRYAG 1 cut(s) 716
BstSLI GKGCMC 1 cut(s) 735
BstV1I GCAGC 2 cut(s) 321, 547
BtgI CCRYGG 1 cut(s) 786
BtsCI GGATG 3 cut(s) 289, 301, 557
BtsIMutI CAGTG 1 cut(s) 42
BveI ACCTGC 1 cut(s) 20
CciI TCATGA 1 cut(s) 631
CseI GACGC 1 cut(s) 682
Csp6I GTAC 1 cut(s) 55
CviAII CATG 3 cut(s) 289, 556, 632
CviJI RGCY 8 cut(s) 63, 160, 323, 491, 543, 560, 713, 741
CviKI_1 RGCY 8 cut(s) 63, 160, 323, 491, 543, 560, 713, 741
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 1 cut(s) 492
DpnI GATC 1 cut(s) 485
DpnII GATC 1 cut(s) 483
Eam1104I CTCTTC 3 cut(s) 470, 503, 645
EarI CTCTTC 3 cut(s) 470, 503, 645
Eco130I CCWWGG 1 cut(s) 524
EcoRI GAATTC 1 cut(s) 570
EcoRII CCWGG 1 cut(s) 702
EcoT14I CCWWGG 1 cut(s) 524
EcoT22I ATGCAT 1 cut(s) 557
ErhI CCWWGG 1 cut(s) 524
FaeI CATG 3 cut(s) 292, 559, 635
FaqI GGGAC 1 cut(s) 389
FatI CATG 3 cut(s) 288, 555, 631
FblI GTMKAC 2 cut(s) 34, 246
Fnu4HI GCNGC 2 cut(s) 310, 561
FokI GGATG 3 cut(s) 296, 308, 564
Fsp4HI GCNGC 2 cut(s) 310, 561
GluI GCNGC 2 cut(s) 310, 561
HapII CCGG 1 cut(s) 742
HgaI GACGC 1 cut(s) 682
Hin1II CATG 3 cut(s) 292, 559, 635
HinfI GANTC 3 cut(s) 360, 478, 514
HpaII CCGG 1 cut(s) 742
HphI GGTGA 2 cut(s) 248, 665
Hpy166II GTNNAC 3 cut(s) 35, 247, 733
Hpy188I TCNGA 6 cut(s) 76, 91, 175, 403, 483, 649
Hpy188III TCNNGA 2 cut(s) 448, 632
Hpy8I GTNNAC 3 cut(s) 35, 247, 733
HpyAV CCTTC 6 cut(s) 122, 215, 286, 376, 411, 674
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 4 cut(s) 4, 555, 563, 733
HpyF3I CTNAG 1 cut(s) 492
Hsp92II CATG 3 cut(s) 292, 559, 635
Kzo9I GATC 1 cut(s) 483
LpnPI CCDG 6 cut(s) 15, 364, 440, 689, 716, 755
Lsp1109I GCAGC 2 cut(s) 321, 547
LweI GCATC 1 cut(s) 542
MaeIII GTNAC 1 cut(s) 66
MalI GATC 1 cut(s) 485
MboI GATC 1 cut(s) 483
MboII GAAGA 9 cut(s) 92, 131, 487, 508, 511, 514, 520, 604, 662
MhlI GDGCHC 1 cut(s) 735
MluCI AATT 8 cut(s) 111, 177, 271, 404, 438, 570, 776, 781
MlyI GAGTC 1 cut(s) 487
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 7 cut(s) 140, 366, 504, 577, 646, 671, 703
Mph1103I ATGCAT 1 cut(s) 557
MroXI GAANNNNTTC 2 cut(s) 599, 654
MseI TTAA 4 cut(s) 9, 251, 441, 779
MslI CAYNNNNRTG 1 cut(s) 630
MspI CCGG 1 cut(s) 742
MspR9I CCNGG 1 cut(s) 704
MvaI CCWGG 1 cut(s) 704
NdeII GATC 1 cut(s) 483
NlaIII CATG 3 cut(s) 292, 559, 635
NmeAIII GCCGAG 1 cut(s) 569
NsiI ATGCAT 1 cut(s) 557
PagI TCATGA 1 cut(s) 631
PcsI WCGNNNNNNNCGW 1 cut(s) 673
PdmI GAANNNNTTC 2 cut(s) 599, 654
PfeI GAWTC 2 cut(s) 360, 514
PflFI GACNNNGTC 1 cut(s) 692
PkrI GCNGC 2 cut(s) 311, 562
PleI GAGTC 1 cut(s) 486
PpsI GAGTC 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 702
PspGI CCWGG 1 cut(s) 702
PsyI GACNNNGTC 1 cut(s) 692
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 630
SaqAI TTAA 4 cut(s) 9, 251, 441, 779
SatI GCNGC 2 cut(s) 310, 561
Sau3AI GATC 1 cut(s) 483
SchI GAGTC 1 cut(s) 487
ScrFI CCNGG 1 cut(s) 704
SduI GDGCHC 1 cut(s) 735
SfaNI GCATC 1 cut(s) 542
SfcI CTRYAG 1 cut(s) 716
SmiMI CAYNNNNRTG 1 cut(s) 630
Sse9I AATT 8 cut(s) 111, 177, 271, 404, 438, 570, 776, 781
StyD4I CCNGG 1 cut(s) 702
StyI CCWWGG 1 cut(s) 524
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 1 cut(s) 574
TasI AATT 8 cut(s) 111, 177, 271, 404, 438, 570, 776, 781
TfiI GAWTC 2 cut(s) 360, 514
Tru1I TTAA 4 cut(s) 9, 251, 441, 779
Tru9I TTAA 4 cut(s) 9, 251, 441, 779
TscAI CASTG 1 cut(s) 49
TseI GCWGC 2 cut(s) 309, 560
TspDTI ATGAA 3 cut(s) 305, 521, 604
TspGWI ACGGA 1 cut(s) 775
TspRI CASTG 1 cut(s) 49
Tth111I GACNNNGTC 1 cut(s) 692
VneI GTGCAC 1 cut(s) 731
XapI RAATTY 3 cut(s) 404, 570, 781
XmiI GTMKAC 2 cut(s) 34, 246
XmnI GAANNNNTTC 2 cut(s) 599, 654
Zsp2I ATGCAT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.