RLG00000020384

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008700
Physical Location & Seq
Reverse (-)
64448822 .. 64454346
5525 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020384

Sequence Viewer

Length: 1209 bp
ATGTTCATCGCCGCAGCAACGACGACGGCGATGATGACGTGTCGTTTCCATACGCTTCGAATTCAATGCGCTGCTTCGAAGCCCGGACCTGGGTTCGGAACCAAATCCAACAACAATAAGAACAAGAAAAAGAACAACCTCAACCAGACAAACAAGGCCGCTACCTCAGTTGAGCAGAAGGGAACTGGTTTTCAACAAAGGAAATCAACCACGAACCGGTCTGTGACAAATCAGGCACCTGGATTAAGTTCCCGATCTGATTGGAAAGTTAAGAGAAATATTGGGGACCTTGAGTTTGAGGAACGTCTGGAAGCAGTTAGAAGTTCAGCACTTGAGCAGAAGAAAACAATTGACAAAGAGGAATTTGGAGCTATTGACTATGATGCACCTGTCAAATCAGAAAAGAAAAAAATTGGACTTGGAACACAGATTGGAGTAGGTGTAGCAGTATTGGTATTTGGTTTGGTTTTTGCTTTGGGGGACTTTCTTCCTTCTAGCAGTGTTAGTCCTACTGAGGATGCTGCAGTAACCAGTAATAAACTGTCCGAAGAAGAGAAAGCTTCACTTCAGACTAGGCTCAAAGAATATGAAGCAACACTTAGTAACAGCCCAAAAGATCCAACTGCTCTTGAGGGAGCTGCAGTAACTTTAGCAGAATTAGGAGAATATACTCGGGCTTCCACTCTGCTTGAGGACTTGACTAAGGAAAAACCAAGTGATCCTGAAGTTTTTCGTCTGCTTGGAGAAGTAAAATATGAACTCAAAGATTATGAAGGGAGCGTTGCTGCATATAAGGTTTCTTCCACGGTGTCCAAAGATCTCAAATTTGAAGTTATGCGTGGCCTTACAAATGCATTGCTTGCTGCTAAAAGACCAGATGAGGCTGTCCAATTTCTTCTTGCCTCTCGATCACGGTTGGATGCAGACAACCCAAAGGCTGCAAGCAGTACAACTGAACTGCAGGTGGATCCCATTCAAGTCGAATTACTTCTTGGAAAAGCCTATTCAGATTGGGGCCATATCAGTGATGCTGTTTCTGTCTATGATCGGCTCATCTCTAGTCATCCAAATGACTTCCGTGGTTACTTGGCTAAGGGAATTATATTAAGAGAAAATGGTAAAGGTGGAGAGGCAGAGCGGATGTTCATACAGGCACGGTTTTTTGCACCAGAGAGGGCCAAGGCACTTGTAGATCGGTATTCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

403

Amino Acids

44.04

Weight (kDa)

8.88

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_19 PF14559 196 - 248 5.5e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 952
Acc36I ACCTGC 1 cut(s) 952
AccB1I GGYRCC 1 cut(s) 235
AccBSI CCGCTC 1 cut(s) 1138
AciI CCGC 3 cut(s) 12, 159, 1138
AclWI GGATC 4 cut(s) 611, 713, 962, 975
AcsI RAATTY 3 cut(s) 60, 362, 824
AcuI CTGAAG 2 cut(s) 551, 744
AfaI GTAC 1 cut(s) 949
AfiI CCNNNNNNNGG 4 cut(s) 89, 90, 95, 216
AflIII ACRYGT 1 cut(s) 38
AgeI ACCGGT 1 cut(s) 216
AgsI TTSAA 5 cut(s) 65, 194, 830, 977, 1203
AjiI CACGTC 1 cut(s) 39
AjnI CCWGG 2 cut(s) 88, 238
AjuI GAANNNNNNNTTGG 2 cut(s) 975, 1007
AluBI AGCT 3 cut(s) 371, 560, 638
AluI AGCT 3 cut(s) 371, 560, 638
AlwI GGATC 4 cut(s) 611, 713, 962, 975
Ama87I CYCGRG 1 cut(s) 672
AoxI GGCC 4 cut(s) 156, 841, 1015, 1176
ApeKI GCWGC 7 cut(s) 14, 71, 521, 638, 785, 863, 938
ApoI RAATTY 3 cut(s) 60, 362, 824
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
AsiGI ACCGGT 1 cut(s) 216
Asp700I GAANNNNTTC 2 cut(s) 729, 987
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 4 cut(s) 86, 286, 1015, 1176
AsuC2I CCSGG 1 cut(s) 84
AsuII TTCGAA 2 cut(s) 58, 77
AvaI CYCGRG 1 cut(s) 672
AvaII GGWCC 2 cut(s) 86, 286
BamHI GGATCC 1 cut(s) 967
BanI GGYRCC 1 cut(s) 235
BbvI GCAGC 7 cut(s) 26, 58, 508, 625, 772, 850, 925
BceAI ACGGC 1 cut(s) 42
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BciT130I CCWGG 2 cut(s) 90, 240
BcnI CCSGG 1 cut(s) 84
BfaI CTAG 3 cut(s) 495, 573, 1059
BfmI CTRYAG 3 cut(s) 522, 639, 959
BfuAI ACCTGC 1 cut(s) 952
BglII AGATCT 1 cut(s) 817
BisI GCNGC 9 cut(s) 12, 15, 72, 159, 522, 639, 786, 864, 939
BlsI GCNGC 9 cut(s) 13, 16, 73, 160, 523, 640, 787, 865, 940
Bme1390I CCNGG 3 cut(s) 84, 90, 240
Bme18I GGWCC 2 cut(s) 86, 286
BmeT110I CYCGRG 1 cut(s) 672
BmgBI CACGTC 1 cut(s) 39
BmgT120I GGNCC 4 cut(s) 86, 286, 1015, 1176
BmiI GGNNCC 5 cut(s) 100, 237, 287, 969, 1016
BmrFI CCNGG 3 cut(s) 84, 90, 240
BmsI GCATC 4 cut(s) 373, 508, 910, 1018
Bpu10I CCTNAGC 1 cut(s) 1092
Bpu14I TTCGAA 2 cut(s) 58, 77
BpuEI CTTGAG 4 cut(s) 311, 353, 650, 710
BpuMI CCSGG 1 cut(s) 84
BsaJI CCNNGG 4 cut(s) 89, 804, 1078, 1179
BsaWI WCCGGW 1 cut(s) 216
BsaXI ACNNNNNCTCC 4 cut(s) 426, 456, 627, 657
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 90, 95, 216
Bse118I RCCGGY 1 cut(s) 216
Bse1I ACTGG 2 cut(s) 190, 531
Bse3DI GCAATG 1 cut(s) 854
BseBI CCWGG 2 cut(s) 90, 240
BseDI CCNNGG 4 cut(s) 89, 804, 1078, 1179
BseGI GGATG 4 cut(s) 523, 925, 1063, 1146
BseLI CCNNNNNNNGG 4 cut(s) 89, 90, 95, 216
BseMI GCAATG 1 cut(s) 854
BseMII CTCAG 2 cut(s) 180, 504
BseNI ACTGG 2 cut(s) 190, 531
BseXI GCAGC 7 cut(s) 26, 58, 508, 625, 772, 850, 925
BshFI GGCC 4 cut(s) 158, 843, 1017, 1178
BshNI GGYRCC 1 cut(s) 235
BshTI ACCGGT 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 672
BsiSI CCGG 2 cut(s) 84, 217
BslFI GGGAC 2 cut(s) 299, 494
BslI CCNNNNNNNGG 4 cut(s) 89, 90, 95, 216
BsmFI GGGAC 2 cut(s) 299, 494
BsnI GGCC 4 cut(s) 158, 843, 1017, 1178
BsoBI CYCGRG 1 cut(s) 672
Bsp119I TTCGAA 2 cut(s) 58, 77
Bsp143I GATC 8 cut(s) 254, 616, 718, 817, 908, 967, 1045, 1192
BspACI CCGC 3 cut(s) 12, 159, 1138
BspANI GGCC 4 cut(s) 158, 843, 1017, 1178
BspCNI CTCAG 2 cut(s) 179, 505
BspLI GGNNCC 5 cut(s) 100, 237, 287, 969, 1016
BspMAI CTGCAG 3 cut(s) 526, 643, 963
BspMI ACCTGC 1 cut(s) 952
BspPI GGATC 4 cut(s) 611, 713, 962, 975
BspT104I TTCGAA 2 cut(s) 58, 77
BspT107I GGYRCC 1 cut(s) 235
BsrBI CCGCTC 1 cut(s) 1138
BsrDI GCAATG 1 cut(s) 854
BsrFI RCCGGY 1 cut(s) 216
BsrI ACTGG 2 cut(s) 190, 531
BssAI RCCGGY 1 cut(s) 216
BssECI CCNNGG 4 cut(s) 89, 804, 1078, 1179
BssMI GATC 8 cut(s) 254, 616, 718, 817, 908, 967, 1045, 1192
BssT1I CCWWGG 1 cut(s) 1179
Bst2UI CCWGG 2 cut(s) 90, 240
Bst4CI ACNGT 4 cut(s) 543, 808, 915, 1158
Bst6I CTCTTC 1 cut(s) 546
BstAPI GCANNNNNTGC 1 cut(s) 860
BstBI TTCGAA 2 cut(s) 58, 77
BstC8I GCNNGC 2 cut(s) 861, 943
BstDEI CTNAG 5 cut(s) 166, 513, 599, 702, 1092
BstDSI CCRYGG 2 cut(s) 804, 1078
BstF5I GGATG 4 cut(s) 523, 925, 1063, 1146
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 8 cut(s) 257, 619, 721, 820, 911, 970, 1048, 1195
BstMBI GATC 8 cut(s) 254, 616, 718, 817, 908, 967, 1045, 1192
BstMWI GCNNNNNNNGC 1 cut(s) 860
BstNI CCWGG 2 cut(s) 90, 240
BstSCI CCNGG 3 cut(s) 82, 88, 238
BstSFI CTRYAG 3 cut(s) 522, 639, 959
BstV1I GCAGC 7 cut(s) 26, 58, 508, 625, 772, 850, 925
BstX2I RGATCY 3 cut(s) 616, 817, 967
BstYI RGATCY 3 cut(s) 616, 817, 967
BsuRI GGCC 4 cut(s) 158, 843, 1017, 1178
BtgI CCRYGG 2 cut(s) 804, 1078
BtgZI GCGATG 1 cut(s) 44
BtrI CACGTC 1 cut(s) 39
BtsCI GGATG 4 cut(s) 523, 925, 1063, 1146
BtsI GCAGTG 1 cut(s) 505
BtsIMutI CAGTG 2 cut(s) 505, 1030
BveI ACCTGC 1 cut(s) 952
Cac8I GCNNGC 2 cut(s) 861, 943
CfoI GCGC 1 cut(s) 71
Cfr10I RCCGGY 1 cut(s) 216
Cfr13I GGNCC 4 cut(s) 86, 286, 1015, 1176
Csp6I GTAC 1 cut(s) 948
CspAI ACCGGT 1 cut(s) 216
CspCI CAANNNNNGTGG 2 cut(s) 670, 705
CviQI GTAC 1 cut(s) 948
DdeI CTNAG 5 cut(s) 166, 513, 599, 702, 1092
DpnI GATC 8 cut(s) 256, 618, 720, 819, 910, 969, 1047, 1194
DpnII GATC 8 cut(s) 254, 616, 718, 817, 908, 967, 1045, 1192
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
Eco130I CCWWGG 1 cut(s) 1179
Eco47I GGWCC 2 cut(s) 86, 286
Eco57I CTGAAG 2 cut(s) 551, 744
Eco88I CYCGRG 1 cut(s) 672
EcoO109I RGGNCCY 1 cut(s) 286
EcoRI GAATTC 1 cut(s) 60
EcoRII CCWGG 2 cut(s) 88, 238
EcoT14I CCWWGG 1 cut(s) 1179
EcoT22I ATGCAT 1 cut(s) 856
ErhI CCWWGG 1 cut(s) 1179
FalI AAGNNNNNCTT 4 cut(s) 549, 581, 582, 614
FaqI GGGAC 2 cut(s) 299, 494
Fnu4HI GCNGC 9 cut(s) 12, 15, 72, 159, 522, 639, 786, 864, 939
FokI GGATG 4 cut(s) 530, 932, 1050, 1153
Fsp4HI GCNGC 9 cut(s) 12, 15, 72, 159, 522, 639, 786, 864, 939
FspBI CTAG 3 cut(s) 495, 573, 1059
GlaI GCGC 1 cut(s) 70
GluI GCNGC 9 cut(s) 12, 15, 72, 159, 522, 639, 786, 864, 939
HaeIII GGCC 4 cut(s) 158, 843, 1017, 1178
HapII CCGG 2 cut(s) 84, 217
HhaI GCGC 1 cut(s) 71
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HindIII AAGCTT 1 cut(s) 558
HpaII CCGG 2 cut(s) 84, 217
Hpy188I TCNGA 6 cut(s) 98, 259, 400, 547, 570, 1009
Hpy188III TCNNGA 6 cut(s) 252, 308, 629, 722, 906, 1203
Hpy99I CGWCG 2 cut(s) 25, 28
HpyAV CCTTC 3 cut(s) 172, 501, 767
HpyCH4III ACNGT 4 cut(s) 543, 808, 915, 1158
HpyCH4IV ACGT 2 cut(s) 38, 304
HpyCH4V TGCA 9 cut(s) 386, 524, 641, 788, 854, 923, 941, 961, 1166
HpyF10VI GCNNNNNNNGC 1 cut(s) 860
HpyF3I CTNAG 5 cut(s) 166, 513, 599, 702, 1092
HpySE526I ACGT 2 cut(s) 38, 304
HspAI GCGC 1 cut(s) 69
Kzo9I GATC 8 cut(s) 254, 616, 718, 817, 908, 967, 1045, 1192
LmnI GCTCC 3 cut(s) 368, 635, 777
Lsp1109I GCAGC 7 cut(s) 26, 58, 508, 625, 772, 850, 925
LweI GCATC 4 cut(s) 373, 508, 910, 1018
MaeI CTAG 3 cut(s) 495, 573, 1059
MaeII ACGT 2 cut(s) 38, 304
MaeIII GTNAC 5 cut(s) 223, 526, 602, 643, 1082
MalI GATC 8 cut(s) 256, 618, 720, 819, 910, 969, 1047, 1194
MbiI CCGCTC 1 cut(s) 1138
MboI GATC 8 cut(s) 254, 616, 718, 817, 908, 967, 1045, 1192
MboII GAAGA 6 cut(s) 352, 479, 560, 563, 792, 887
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 3 cut(s) 616, 817, 967
MluCI AATT 9 cut(s) 60, 348, 362, 411, 656, 824, 890, 983, 1098
MmeI TCCRAC 3 cut(s) 132, 644, 897
Mph1103I ATGCAT 1 cut(s) 856
MroXI GAANNNNTTC 2 cut(s) 729, 987
MseI TTAA 3 cut(s) 245, 270, 1106
MslI CAYNNNNRTG 2 cut(s) 1023, 1068
MspI CCGG 2 cut(s) 84, 217
MspR9I CCNGG 3 cut(s) 84, 90, 240
MunI CAATTG 1 cut(s) 348
MvaI CCWGG 2 cut(s) 90, 240
MwoI GCNNNNNNNGC 1 cut(s) 860
NciI CCSGG 1 cut(s) 84
NdeII GATC 8 cut(s) 254, 616, 718, 817, 908, 967, 1045, 1192
NlaIV GGNNCC 5 cut(s) 100, 237, 287, 969, 1016
NmuCI GTSAC 1 cut(s) 223
NsiI ATGCAT 1 cut(s) 856
NspV TTCGAA 2 cut(s) 58, 77
PaqCI CACCTGC 1 cut(s) 952
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PdmI GAANNNNTTC 2 cut(s) 729, 987
PinAI ACCGGT 1 cut(s) 216
PkrI GCNGC 9 cut(s) 13, 16, 73, 160, 523, 640, 787, 865, 940
PpuMI RGGWCCY 1 cut(s) 286
Psp5II RGGWCCY 1 cut(s) 286
Psp6I CCWGG 2 cut(s) 88, 238
PspGI CCWGG 2 cut(s) 88, 238
PspN4I GGNNCC 5 cut(s) 100, 237, 287, 969, 1016
PspPI GGNCC 4 cut(s) 86, 286, 1015, 1176
PspPPI RGGWCCY 1 cut(s) 286
PstI CTGCAG 3 cut(s) 526, 643, 963
PsuI RGATCY 3 cut(s) 616, 817, 967
RsaI GTAC 1 cut(s) 949
RsaNI GTAC 1 cut(s) 948
RseI CAYNNNNRTG 2 cut(s) 1023, 1068
SaqAI TTAA 3 cut(s) 245, 270, 1106
SatI GCNGC 9 cut(s) 12, 15, 72, 159, 522, 639, 786, 864, 939
Sau3AI GATC 8 cut(s) 254, 616, 718, 817, 908, 967, 1045, 1192
Sau96I GGNCC 4 cut(s) 86, 286, 1015, 1176
ScrFI CCNGG 3 cut(s) 84, 90, 240
SfaNI GCATC 4 cut(s) 373, 508, 910, 1018
SfcI CTRYAG 3 cut(s) 522, 639, 959
SfuI TTCGAA 2 cut(s) 58, 77
SinI GGWCC 2 cut(s) 86, 286
SmiMI CAYNNNNRTG 2 cut(s) 1023, 1068
SmlI CTYRAG 4 cut(s) 290, 332, 629, 689
SmoI CTYRAG 4 cut(s) 290, 332, 629, 689
Sse9I AATT 9 cut(s) 60, 348, 362, 411, 656, 824, 890, 983, 1098
SsiI CCGC 3 cut(s) 12, 159, 1138
SspI AATATT 1 cut(s) 280
SspMI CTAG 3 cut(s) 495, 573, 1059
StyD4I CCNGG 3 cut(s) 82, 88, 238
StyI CCWWGG 1 cut(s) 1179
TaaI ACNGT 4 cut(s) 543, 808, 915, 1158
TaiI ACGT 2 cut(s) 41, 307
TaqI TCGA 4 cut(s) 58, 77, 907, 981
TasI AATT 9 cut(s) 60, 348, 362, 411, 656, 824, 890, 983, 1098
TatI WGTACW 1 cut(s) 947
TauI GCSGC 2 cut(s) 14, 161
Tru1I TTAA 3 cut(s) 245, 270, 1106
Tru9I TTAA 3 cut(s) 245, 270, 1106
TscAI CASTG 2 cut(s) 505, 1030
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 7 cut(s) 14, 71, 521, 638, 785, 863, 938
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 4 cut(s) 603, 771, 786, 1135
TspGWI ACGGA 1 cut(s) 1067
TspRI CASTG 2 cut(s) 505, 1030
VpaK11BI GGWCC 2 cut(s) 86, 286
XapI RAATTY 3 cut(s) 60, 362, 824
XmnI GAANNNNTTC 2 cut(s) 729, 987
XspI CTAG 3 cut(s) 495, 573, 1059
Zsp2I ATGCAT 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.