Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008700

Physical Location & Seq

Genomic Coordinates Forward (+)

6431622 .. 6436739

Gene Structure 5118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g08400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGTCGTTCGCAGCAACAGCAGCGACAACGATGACGACATGCCACTTCGTTACGCTTCGAATTCAGTGCACTGATTCCAAGCCCAGAACTGGTTTCGGAAGCAAAACCAACAGCAAGAACAAGAACAGGAACAAGAACAACCTCAGCCAGCAGGAATCAACTACCAAACGGTCTGGTGGCGTTCCTACTCAGGCACCCGGGTTAAGTTCTCGGTTCGATGGAAAGGTTAAGAGAAACCCTGCTGAGCTTGAGTTTGAGGAACGTCTAGCAGCAGTCAGAAGTTCAGCACTTGAGCAGAAGAAGGTAGTGGAGAAAAAGGAATTTGGGCCAATTGACTATGATGCACCTGTTGAGTTGGAGAAAACGGATGAGAAAAAAATTGGACTCGGTGCACAGATTGGAGTAGGTGTAGCTGTAGTGGTCTTTGGTTTGGTTTTTGCTCTTGGAGACTTTCTTCCGTCTGGAAGTTTGAGTCCTACTGAGGATACTGCAGCAACCGCCAATAAACTGTCCGAAGAAGAGAAAGCGTCACTTCAGACTAGGCTGAAAGAATATGAAGCAACGCTTAGTAACTCCCCAAAAGATCCAACTGCTCTTGAGGGAGCTGCGGTAACCTTAGCAGAATTAGGAGAATATACACGGGCTTCAACTCTGCTTCAAGACTTGATTAAGGAGAAACCAAGTGATCCTGAAGTTTTTCGTTTGCTTGGAGAAGTTAAATACGAACTCAAGGATTTTGAAGGAAGTGCTGCTGCATTTAAGGTTTCTTCATCGATGTCTAAAGATCTCAAATTTGAAGTTCTGCGTGGCCTTACGAATGCATTACTTGCTGCTAAGAAACCAGATGAGGCTGTTCAATTCCTTCTTGCCTCTCGTGAACGTATGAATGTGGACAAGCCAGATGCAAAGGCTGGAAGTAGTGCGACTGAAACAAATTCACAGGTGGACCCTATTCAAGTCGAATTACTTCTTGGAAAAGCCTATTCAGATTGGGGCCATATCAGTGATGCTGTTTCTGTCTATGACCGGCTCATCTCTAGTCATCCAAATGACTTCCGTGGTTACTTGGCCAAGGGAATTATTTTGAGAGAAAATGGTAAAGCTGGAGAAGCGGAGAGGATGTTTATACAGGCACGGTTCTTTGCACCGGATAAAGCCAAAGCATTTGTAGACAGATATTCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

396

Amino Acids

43.06

Weight (kDa)

7.65

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78915 AT1G78915 AT1G78915
fragaria_vesca	FvH4_6g36830 FvH4_6g36830 FvH4_6g36830 FvH4_6g36830
malus_domestica	MD09G1166500.v1.1
prunus_persica	Prupe.3G024200_v2.0.a1 Prupe.3G024200_v2.0.a1 Prupe.3G024200_v2.0.a1
pyrus_communis	pycom09g08400
rosa_chinensis	RchiOBHm_Chr2g0149221
rosa_laevigata	RLG00000020384
rosa_multiflora	Rmu_sc0001615.1_g000005 Rmu_sc0018207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098300
rosa_rugosa	Rorug02G0409900
rosa_samantha	Rh2AG470400 Rh2BG482600 Rh2CG456300 Rh2DG491700
rosa_wichuraiana	Rw2G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	193
AccI	GTMKAC	1 cut(s)	1170
AciI	CCGC	3 cut(s)	498, 608, 1112
AclWI	GGATC	2 cut(s)	578, 680
AcoI	YGGCCR	1 cut(s)	1068
AcsI	RAATTY	4 cut(s)	60, 320, 791, 934
AcuI	CTGAAG	2 cut(s)	518, 711
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	7 cut(s)	648, 659, 740, 797, 857, 956, 1182
AjuI	GAANNNNNNNTTGG	2 cut(s)	954, 986
AluBI	AGCT	4 cut(s)	247, 413, 605, 1103
AluI	AGCT	4 cut(s)	247, 413, 605, 1103
Alw21I	GWGCWC	2 cut(s)	71, 394
Alw26I	GTCTC	1 cut(s)	441
Alw44I	GTGCAC	2 cut(s)	67, 390
AlwI	GGATC	2 cut(s)	578, 680
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	4 cut(s)	326, 808, 994, 1068
ApaLI	GTGCAC	2 cut(s)	67, 390
ApeKI	GCWGC	8 cut(s)	11, 20, 269, 491, 605, 749, 752, 830
ApoI	RAATTY	4 cut(s)	60, 320, 791, 934
Asp700I	GAANNNNTTC	2 cut(s)	696, 966
AspS9I	GGNCC	3 cut(s)	326, 946, 994
AsuC2I	CCSGG	2 cut(s)	198, 199
AsuII	TTCGAA	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	946
BaeGI	GKGCMC	2 cut(s)	71, 394
BalI	TGGCCA	1 cut(s)	1070
BanI	GGYRCC	1 cut(s)	193
BauI	CACGAG	1 cut(s)	873
Bbv12I	GWGCWC	2 cut(s)	71, 394
BbvCI	CCTCAGC	1 cut(s)	143
BbvI	GCAGC	8 cut(s)	23, 32, 281, 503, 592, 736, 739, 817
BccI	CCATC	1 cut(s)	212
BcgI	CGANNNNNNTGC	2 cut(s)	48, 82
BciVI	GTATCC	1 cut(s)	478
BcnI	CCSGG	2 cut(s)	198, 199
BcoDI	GTCTC	1 cut(s)	441
BfaI	CTAG	3 cut(s)	266, 540, 1038
BfmI	CTRYAG	2 cut(s)	414, 489
BfuI	GTATCC	1 cut(s)	478
BglII	AGATCT	1 cut(s)	784
BisI	GCNGC	8 cut(s)	12, 21, 270, 492, 606, 750, 753, 831
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	8 cut(s)	13, 22, 271, 493, 607, 751, 754, 832
Bme1390I	CCNGG	2 cut(s)	198, 199
Bme18I	GGWCC	1 cut(s)	946
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	3 cut(s)	326, 946, 994
BmiI	GGNNCC	3 cut(s)	195, 948, 995
BmrFI	CCNGG	2 cut(s)	198, 199
BmsI	GCATC	3 cut(s)	331, 892, 997
BpmI	CTGGAG	1 cut(s)	1125
Bpu10I	CCTNAGC	2 cut(s)	143, 616
Bpu1102I	GCTNAGC	1 cut(s)	243
Bpu14I	TTCGAA	1 cut(s)	58
BpuEI	CTTGAG	4 cut(s)	269, 311, 617, 713
BpuMI	CCSGG	2 cut(s)	198, 199
Bsa29I	ATCGAT	1 cut(s)	773
BsaJI	CCNNGG	3 cut(s)	197, 1057, 1071
BsaWI	WCCGGW	1 cut(s)	1147
BsaXI	ACNNNNNCTCC	6 cut(s)	393, 423, 594, 624, 1106, 1136
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse118I	RCCGGY	1 cut(s)	1026
Bse1I	ACTGG	1 cut(s)	94
BseCI	ATCGAT	1 cut(s)	773
BseDI	CCNNGG	3 cut(s)	197, 1057, 1071
BseGI	GGATG	3 cut(s)	373, 1042, 1125
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	4 cut(s)	157, 203, 234, 471
BseNI	ACTGG	1 cut(s)	94
BseSI	GKGCMC	2 cut(s)	71, 394
BseXI	GCAGC	8 cut(s)	23, 32, 281, 503, 592, 736, 739, 817
BshFI	GGCC	4 cut(s)	328, 810, 996, 1070
BshNI	GGYRCC	1 cut(s)	193
BshVI	ATCGAT	1 cut(s)	773
BsiHKAI	GWGCWC	2 cut(s)	71, 394
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	3 cut(s)	198, 1027, 1148
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	441
BsmI	GAATGC	1 cut(s)	823
BsnI	GGCC	4 cut(s)	328, 810, 996, 1070
BsoBI	CYCGRG	1 cut(s)	197
Bsp119I	TTCGAA	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	71, 394
Bsp143I	GATC	3 cut(s)	583, 685, 784
Bsp1720I	GCTNAGC	1 cut(s)	243
BspACI	CCGC	3 cut(s)	498, 608, 1112
BspANI	GGCC	4 cut(s)	328, 810, 996, 1070
BspCNI	CTCAG	4 cut(s)	156, 202, 235, 472
BspDI	ATCGAT	1 cut(s)	773
BspLI	GGNNCC	3 cut(s)	195, 948, 995
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	2 cut(s)	578, 680
BspT104I	TTCGAA	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	1026
BsrI	ACTGG	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	1026
BssECI	CCNNGG	3 cut(s)	197, 1057, 1071
BssMI	GATC	3 cut(s)	583, 685, 784
BssSI	CACGAG	1 cut(s)	873
BssT1I	CCWWGG	1 cut(s)	1071
Bst2BI	CACGAG	1 cut(s)	873
Bst4CI	ACNGT	3 cut(s)	171, 510, 1137
Bst6I	CTCTTC	1 cut(s)	513
BstAPI	GCANNNNNTGC	1 cut(s)	827
BstBI	TTCGAA	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	7 cut(s)	143, 189, 243, 480, 566, 616, 834
BstDSI	CCRYGG	1 cut(s)	1057
BstEII	GGTNACC	1 cut(s)	610
BstF5I	GGATG	3 cut(s)	373, 1042, 1125
BstKTI	GATC	3 cut(s)	586, 688, 787
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	3 cut(s)	583, 685, 784
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 20, 497, 827, 1109
BstNSI	RCATGY	1 cut(s)	42
BstPI	GGTNACC	1 cut(s)	610
BstSCI	CCNGG	2 cut(s)	196, 197
BstSFI	CTRYAG	2 cut(s)	414, 489
BstSLI	GKGCMC	2 cut(s)	71, 394
BstV1I	GCAGC	8 cut(s)	23, 32, 281, 503, 592, 736, 739, 817
BstX2I	RGATCY	2 cut(s)	583, 784
BstYI	RGATCY	2 cut(s)	583, 784
Bsu15I	ATCGAT	1 cut(s)	773
BsuI	GTATCC	1 cut(s)	478
BsuRI	GGCC	4 cut(s)	328, 810, 996, 1070
BsuTUI	ATCGAT	1 cut(s)	773
BtgI	CCRYGG	1 cut(s)	1057
BtsCI	GGATG	3 cut(s)	373, 1042, 1125
BtsIMutI	CAGTG	3 cut(s)	69, 71, 1009
Cac8I	GCNNGC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	1026
Cfr13I	GGNCC	3 cut(s)	326, 946, 994
Cfr9I	CCCGGG	1 cut(s)	197
ClaI	ATCGAT	1 cut(s)	773
CseI	GACGC	1 cut(s)	516
CviAII	CATG	1 cut(s)	39
DdeI	CTNAG	7 cut(s)	143, 189, 243, 480, 566, 616, 834
DpnI	GATC	3 cut(s)	585, 687, 786
DpnII	GATC	3 cut(s)	583, 685, 784
EaeI	YGGCCR	1 cut(s)	1068
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Eco130I	CCWWGG	1 cut(s)	1071
Eco47I	GGWCC	1 cut(s)	946
Eco57I	CTGAAG	2 cut(s)	518, 711
Eco88I	CYCGRG	1 cut(s)	197
Eco91I	GGTNACC	1 cut(s)	610
EcoO65I	GGTNACC	1 cut(s)	610
EcoRI	GAATTC	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	1071
EcoT22I	ATGCAT	1 cut(s)	823
ErhI	CCWWGG	1 cut(s)	1071
FaeI	CATG	1 cut(s)	42
FaiI	YATR	8 cut(s)	40, 339, 555, 636, 884, 999, 1023, 1127
FalI	AAGNNNNNCTT	4 cut(s)	516, 548, 549, 581
FatI	CATG	1 cut(s)	38
FblI	GTMKAC	1 cut(s)	1170
Fnu4HI	GCNGC	8 cut(s)	12, 21, 270, 492, 606, 750, 753, 831
FokI	GGATG	3 cut(s)	380, 1029, 1132
Fsp4HI	GCNGC	8 cut(s)	12, 21, 270, 492, 606, 750, 753, 831
FspBI	CTAG	3 cut(s)	266, 540, 1038
GluI	GCNGC	8 cut(s)	12, 21, 270, 492, 606, 750, 753, 831
GsuI	CTGGAG	1 cut(s)	1125
HaeIII	GGCC	4 cut(s)	328, 810, 996, 1070
HapII	CCGG	3 cut(s)	198, 1027, 1148
HgaI	GACGC	1 cut(s)	516
Hin1II	CATG	1 cut(s)	42
HinfI	GANTC	4 cut(s)	74, 155, 384, 472
HpaII	CCGG	3 cut(s)	198, 1027, 1148
Hpy166II	GTNNAC	6 cut(s)	69, 392, 878, 892, 946, 1171
Hpy188I	TCNGA	5 cut(s)	98, 278, 514, 537, 988
Hpy188III	TCNNGA	6 cut(s)	462, 596, 659, 689, 875, 1182
Hpy8I	GTNNAC	6 cut(s)	69, 392, 878, 892, 946, 1171
HpyAV	CCTTC	3 cut(s)	295, 734, 872
HpyCH4III	ACNGT	3 cut(s)	171, 510, 1137
HpyCH4IV	ACGT	2 cut(s)	262, 880
HpyCH4V	TGCA	8 cut(s)	69, 344, 392, 491, 755, 821, 905, 1145
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 20, 497, 827, 1109
HpyF3I	CTNAG	7 cut(s)	143, 189, 243, 480, 566, 616, 834
HpySE526I	ACGT	2 cut(s)	262, 880
Hsp92II	CATG	1 cut(s)	42
Kzo9I	GATC	3 cut(s)	583, 685, 784
LmnI	GCTCC	1 cut(s)	602
Lsp1109I	GCAGC	8 cut(s)	23, 32, 281, 503, 592, 736, 739, 817
LweI	GCATC	3 cut(s)	331, 892, 997
MaeI	CTAG	3 cut(s)	266, 540, 1038
MaeII	ACGT	2 cut(s)	262, 880
MaeIII	GTNAC	5 cut(s)	49, 528, 569, 610, 1061
MalI	GATC	3 cut(s)	585, 687, 786
MboI	GATC	3 cut(s)	583, 685, 784
MboII	GAAGA	5 cut(s)	310, 446, 527, 530, 759
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	2 cut(s)	583, 784
MhlI	GDGCHC	2 cut(s)	71, 394
MlsI	TGGCCA	1 cut(s)	1070
MluNI	TGGCCA	1 cut(s)	1070
MlyI	GAGTC	2 cut(s)	378, 481
MmeI	TCCRAC	2 cut(s)	336, 611
MnlI	CCTC	7 cut(s)	152, 250, 475, 592, 841, 880, 1110
Mox20I	TGGCCA	1 cut(s)	1070
Mph1103I	ATGCAT	1 cut(s)	823
MroXI	GAANNNNTTC	2 cut(s)	696, 966
MscI	TGGCCA	1 cut(s)	1070
MseI	TTAA	5 cut(s)	203, 228, 669, 717, 759
MslI	CAYNNNNRTG	2 cut(s)	1002, 1047
Msp20I	TGGCCA	1 cut(s)	1070
MspI	CCGG	3 cut(s)	198, 1027, 1148
MspR9I	CCNGG	2 cut(s)	198, 199
MunI	CAATTG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	823
MwoI	GCNNNNNNNGC	5 cut(s)	17, 20, 497, 827, 1109
NciI	CCSGG	2 cut(s)	198, 199
NdeII	GATC	3 cut(s)	583, 685, 784
NlaIII	CATG	1 cut(s)	42
NlaIV	GGNNCC	3 cut(s)	195, 948, 995
NmuCI	GTSAC	1 cut(s)	528
NsiI	ATGCAT	1 cut(s)	823
NspI	RCATGY	1 cut(s)	42
NspV	TTCGAA	1 cut(s)	58
PctI	GAATGC	1 cut(s)	823
PdmI	GAANNNNTTC	2 cut(s)	696, 966
PfeI	GAWTC	2 cut(s)	74, 155
PkrI	GCNGC	8 cut(s)	13, 22, 271, 493, 607, 751, 754, 832
PleI	GAGTC	2 cut(s)	378, 480
PpsI	GAGTC	2 cut(s)	378, 480
PspEI	GGTNACC	1 cut(s)	610
PspN4I	GGNNCC	3 cut(s)	195, 948, 995
PspPI	GGNCC	3 cut(s)	326, 946, 994
PstI	CTGCAG	1 cut(s)	493
PsuI	RGATCY	2 cut(s)	583, 784
RseI	CAYNNNNRTG	2 cut(s)	1002, 1047
SaqAI	TTAA	5 cut(s)	203, 228, 669, 717, 759
SatI	GCNGC	8 cut(s)	12, 21, 270, 492, 606, 750, 753, 831
Sau3AI	GATC	3 cut(s)	583, 685, 784
Sau96I	GGNCC	3 cut(s)	326, 946, 994
SchI	GAGTC	2 cut(s)	378, 481
ScrFI	CCNGG	2 cut(s)	198, 199
SduI	GDGCHC	2 cut(s)	71, 394
SfaNI	GCATC	3 cut(s)	331, 892, 997
SfcI	CTRYAG	2 cut(s)	414, 489
SfuI	TTCGAA	1 cut(s)	58
SinI	GGWCC	1 cut(s)	946
SmaI	CCCGGG	1 cut(s)	199
SmiMI	CAYNNNNRTG	2 cut(s)	1002, 1047
SmlI	CTYRAG	4 cut(s)	248, 290, 596, 728
SmoI	CTYRAG	4 cut(s)	248, 290, 596, 728
SsiI	CCGC	3 cut(s)	498, 608, 1112
SspMI	CTAG	3 cut(s)	266, 540, 1038
StyD4I	CCNGG	2 cut(s)	196, 197
StyI	CCWWGG	1 cut(s)	1071
TaaI	ACNGT	3 cut(s)	171, 510, 1137
TaiI	ACGT	2 cut(s)	265, 883
TaqI	TCGA	4 cut(s)	58, 216, 773, 960
TfiI	GAWTC	2 cut(s)	74, 155
Tru1I	TTAA	5 cut(s)	203, 228, 669, 717, 759
Tru9I	TTAA	5 cut(s)	203, 228, 669, 717, 759
TscAI	CASTG	3 cut(s)	71, 76, 1009
TseFI	GTSAC	1 cut(s)	528
TseI	GCWGC	8 cut(s)	11, 20, 269, 491, 605, 749, 752, 830
Tsp45I	GTSAC	1 cut(s)	528
TspDTI	ATGAA	3 cut(s)	570, 759, 899
TspGWI	ACGGA	3 cut(s)	380, 447, 1046
TspMI	CCCGGG	1 cut(s)	197
TspRI	CASTG	3 cut(s)	71, 76, 1009
VneI	GTGCAC	2 cut(s)	67, 390
VpaK11BI	GGWCC	1 cut(s)	946
XapI	RAATTY	4 cut(s)	60, 320, 791, 934
XceI	RCATGY	1 cut(s)	42
XmaI	CCCGGG	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	1170
XmnI	GAANNNNTTC	2 cut(s)	696, 966
XspI	CTAG	3 cut(s)	266, 540, 1038
Zsp2I	ATGCAT	1 cut(s)	823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.