AT1G78922

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006593
Physical Location & Seq
Reverse (-)
29676755 .. 29677815
1061 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78922.1

Sequence Viewer

Length: 669 bp
ATGGGAAACGCTATAGGCAAAGCATCAAACGACATCGGAGGTTTTATCGGGAATATTTTCACAGCACCGTTAAAAGCCACACTTGGAAGATCCTGTTTAGATGTATGCTCGGGACCATGGGATCTTGAGTGTTTCATAGAACATTTCTGTCTTCCTGATATTGCAAAGCTTGTGCTGATGTCAAGCCTCTGTTTCATAATTTTGATGTTCATCACCCTCCTGTTCAAGCTTGGAATTTGCCAATGTGTTGTGAAAAGTATCTGCAAAATGTCATGTGCCGCTTGTGCAGCGTACTGGTTCGACATTGGAGAGATGATTAGTTGCTTGTGTCACAGTTTGACTAACATAAATCGGGTCAACCGTCGCAGAAAACGTCTCGATGATATAGAAGCTACGACCTATGATTATCCGAGTGATGATGAATCAAGTTCATCGGACAGTCCCAGTCGAATAGATAACATTAGACCAAAGCAGAGAAGAAGAAGACTAGGAAGCAAACACAGCCACCACCATCATGGCAGCAATCGCAACAACCGCCGTCTCATAAGACTACCGAGTAGACAATTGTCTGTACGAGTTGGAGGCAAATCAAGAAGAGTAAGAAGAAGTACTAGAAAGATTAAATCGAGGAAAATAAAGACTCTCAAAGTCAAAGATGTGGTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

25.14

Weight (kDa)

9.95

Isoelectric Point (pI)

75.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 559
AciI CCGC 2 cut(s) 279, 535
AclWI GGATC 2 cut(s) 84, 129
AcsI RAATTY 1 cut(s) 234
AfaI GTAC 3 cut(s) 293, 573, 610
AgsI TTSAA 1 cut(s) 226
AluBI AGCT 3 cut(s) 169, 229, 392
AluI AGCT 3 cut(s) 169, 229, 392
Alw26I GTCTC 2 cut(s) 380, 545
AlwI GGATC 2 cut(s) 84, 129
Ama87I CYCGRG 1 cut(s) 109
ApeKI GCWGC 2 cut(s) 287, 519
ApoI RAATTY 1 cut(s) 234
Asp700I GAANNNNTTC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 205
AvaI CYCGRG 1 cut(s) 109
AvaII GGWCC 1 cut(s) 113
BbsI GAAGAC 2 cut(s) 143, 490
BbvI GCAGC 2 cut(s) 299, 531
BccI CCATC 1 cut(s) 519
BceAI ACGGC 1 cut(s) 522
BcoDI GTCTC 2 cut(s) 380, 545
BfaI CTAG 2 cut(s) 488, 612
BfmI CTRYAG 1 cut(s) 12
BisI GCNGC 3 cut(s) 279, 288, 520
BlsI GCNGC 3 cut(s) 280, 289, 521
BmcAI AGTACT 1 cut(s) 610
Bme18I GGWCC 1 cut(s) 113
BmeT110I CYCGRG 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 114
BmrI ACTGGG 1 cut(s) 438
BmsI GCATC 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 438
BoxI GACNNNNGTC 1 cut(s) 565
BpiI GAAGAC 2 cut(s) 143, 490
BpuEI CTTGAG 1 cut(s) 146
BsaBI GATNNNNATC 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 116
Bse1I ACTGG 2 cut(s) 299, 444
Bse8I GATNNNNATC 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 116
BseJI GATNNNNATC 1 cut(s) 209
BseNI ACTGG 2 cut(s) 299, 444
BseXI GCAGC 2 cut(s) 299, 531
BsgI GTGCAG 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 109
BslFI GGGAC 2 cut(s) 126, 426
BsmAI GTCTC 2 cut(s) 380, 545
BsmBI CGTCTC 2 cut(s) 380, 545
BsmFI GGGAC 2 cut(s) 126, 426
BsoBI CYCGRG 1 cut(s) 109
Bsp143I GATC 2 cut(s) 89, 121
Bsp19I CCATGG 1 cut(s) 116
BspACI CCGC 2 cut(s) 279, 535
BspLI GGNNCC 1 cut(s) 114
BspPI GGATC 2 cut(s) 84, 129
BsrI ACTGG 2 cut(s) 299, 444
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 2 cut(s) 89, 121
BssT1I CCWWGG 1 cut(s) 116
Bst4CI ACNGT 4 cut(s) 69, 335, 362, 440
Bst6I CTCTTC 1 cut(s) 589
BstDSI CCRYGG 1 cut(s) 116
BstKTI GATC 2 cut(s) 92, 124
BstMAI GTCTC 2 cut(s) 380, 545
BstMBI GATC 2 cut(s) 89, 121
BstMWI GCNNNNNNNGC 5 cut(s) 284, 287, 501, 525, 534
BstPAI GACNNNNGTC 1 cut(s) 565
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 299, 531
BstV2I GAAGAC 2 cut(s) 143, 490
BstX2I RGATCY 2 cut(s) 89, 121
BstXI CCANNNNNNTGG 1 cut(s) 515
BstYI RGATCY 2 cut(s) 89, 121
BtgI CCRYGG 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 3 cut(s) 292, 572, 609
CviAII CATG 3 cut(s) 117, 273, 515
CviJI RGCY 6 cut(s) 77, 169, 186, 229, 392, 504
CviKI_1 RGCY 6 cut(s) 77, 169, 186, 229, 392, 504
CviQI GTAC 3 cut(s) 292, 572, 609
DpnI GATC 2 cut(s) 91, 123
DpnII GATC 2 cut(s) 89, 121
Eam1104I CTCTTC 1 cut(s) 589
EarI CTCTTC 1 cut(s) 589
Eco130I CCWWGG 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 116
Esp3I CGTCTC 2 cut(s) 380, 545
FaeI CATG 3 cut(s) 120, 276, 518
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FaqI GGGAC 2 cut(s) 126, 426
FatI CATG 3 cut(s) 116, 272, 514
FblI GTMKAC 1 cut(s) 559
Fnu4HI GCNGC 3 cut(s) 279, 288, 520
Fsp4HI GCNGC 3 cut(s) 279, 288, 520
FspBI CTAG 2 cut(s) 488, 612
GluI GCNGC 3 cut(s) 279, 288, 520
Hin1II CATG 3 cut(s) 120, 276, 518
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 2 cut(s) 167, 227
HinfI GANTC 2 cut(s) 422, 640
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 2 cut(s) 358, 560
Hpy188I TCNGA 3 cut(s) 38, 411, 436
Hpy188III TCNNGA 6 cut(s) 49, 111, 125, 155, 377, 591
Hpy8I GTNNAC 2 cut(s) 358, 560
Hpy99I CGWCG 1 cut(s) 366
HpyCH4III ACNGT 4 cut(s) 69, 335, 362, 440
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 3 cut(s) 164, 264, 287
HpyF10VI GCNNNNNNNGC 5 cut(s) 284, 287, 501, 525, 534
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 3 cut(s) 120, 276, 518
Kzo9I GATC 2 cut(s) 89, 121
LpnPI CCDG 5 cut(s) 106, 168, 233, 280, 457
Lsp1109I GCAGC 2 cut(s) 299, 531
LweI GCATC 1 cut(s) 32
MaeI CTAG 2 cut(s) 488, 612
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 1 cut(s) 329
MalI GATC 2 cut(s) 91, 123
MboI GATC 2 cut(s) 89, 121
MboII GAAGA 7 cut(s) 99, 143, 489, 492, 495, 606, 615
MfeI CAATTG 1 cut(s) 563
MflI RGATCY 2 cut(s) 89, 121
MluCI AATT 3 cut(s) 198, 234, 563
MlyI GAGTC 1 cut(s) 634
MmeI TCCRAC 1 cut(s) 559
MnlI CCTC 5 cut(s) 32, 197, 227, 575, 621
MroXI GAANNNNTTC 1 cut(s) 56
MseI TTAA 3 cut(s) 71, 621, 667
MslI CAYNNNNRTG 1 cut(s) 513
MunI CAATTG 1 cut(s) 563
MwoI GCNNNNNNNGC 5 cut(s) 284, 287, 501, 525, 534
NcoI CCATGG 1 cut(s) 116
NdeII GATC 2 cut(s) 89, 121
NlaIII CATG 3 cut(s) 120, 276, 518
NlaIV GGNNCC 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 329
PcsI WCGNNNNNNNCGW 2 cut(s) 358, 370
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 422
PkrI GCNGC 3 cut(s) 280, 289, 521
PleI GAGTC 1 cut(s) 634
PpsI GAGTC 1 cut(s) 634
PshAI GACNNNNGTC 1 cut(s) 565
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 113
PsuI RGATCY 2 cut(s) 89, 121
RsaI GTAC 3 cut(s) 293, 573, 610
RsaNI GTAC 3 cut(s) 292, 572, 609
RseI CAYNNNNRTG 1 cut(s) 513
SaqAI TTAA 3 cut(s) 71, 621, 667
SatI GCNGC 3 cut(s) 279, 288, 520
Sau3AI GATC 2 cut(s) 89, 121
Sau96I GGNCC 1 cut(s) 113
ScaI AGTACT 1 cut(s) 610
SchI GAGTC 1 cut(s) 634
SetI ASST 6 cut(s) 43, 171, 231, 376, 394, 401
SfaNI GCATC 1 cut(s) 32
SfcI CTRYAG 1 cut(s) 12
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 3 cut(s) 198, 234, 563
SsiI CCGC 2 cut(s) 279, 535
SspI AATATT 1 cut(s) 55
SspMI CTAG 2 cut(s) 488, 612
StyI CCWWGG 1 cut(s) 116
TaaI ACNGT 4 cut(s) 69, 335, 362, 440
TaiI ACGT 1 cut(s) 376
TaqI TCGA 4 cut(s) 300, 378, 448, 626
TasI AATT 3 cut(s) 198, 234, 563
TatI WGTACW 1 cut(s) 608
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 1 cut(s) 422
Tru1I TTAA 3 cut(s) 71, 621, 667
Tru9I TTAA 3 cut(s) 71, 621, 667
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 2 cut(s) 287, 519
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 5 cut(s) 124, 184, 199, 420, 435
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 1 cut(s) 234
XcmI CCANNNNNNNNNTGG 1 cut(s) 512
XmiI GTMKAC 1 cut(s) 559
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 2 cut(s) 488, 612
ZrmI AGTACT 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.