Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0006593

Physical Location & Seq

Genomic Coordinates Forward (+)

39767124 .. 39768248

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G028900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGCACTGTCATCAGTAAAGCTACGGATGGGCTCGGCGACCTGCTTGAAAAAACAATTTGTTCAGGACCTTGGGATTTGGTTTGTTTCATTGATCACCTATGCGTGTCCAATCTGTTGAAACTGCTTGTGATCCTGGTCCTTTGTTACATAACATTACTATTCTTCTATTTAGTATTCAAGTTGGGGATCTTCCAATGCATTGGAAAAAGCCTCTGTAAAATGTGCTGGGCTGCATGTGAGACATATTGTTTCACGTGTTACAAGTTGAGGAACACTAAGAGGATAAACCGTCGTCGCCGACGCCATCTCCATCACCGCCAATTTCGAGACATTGAACAAGACTACAGTTCAAGTGGAGATAATGAGTTGTGGGACAATTATCGTAATCTTAATCGATCTGTTAACCGTAGGCATGGCACTCTCAGCCACCATCATTGTCATGTAAGGTTAAAGTCTAGGAGTATGTCTGTTCGCATTACGGGCAGATCTCAAAGGCTAAAAAGCTCGAGACGTGTGAAAATAAGCAAGGTGACAAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

21.25

Weight (kDa)

9.98

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78922
fragaria_vesca	FvH4_4g20570 FvH4_6g36610 FvH4_6g36610 FvH4_6g36610
malus_domestica	MD04G1024200.v1.1 MD04G1024400.v1.1
prunus_persica	Prupe.3G025100_v2.0.a1 Prupe.3G025100_v2.0.a1
pyrus_communis	pycom04g02080
rosa_chinensis	RchiOBHm_Chr2g0149081
rosa_laevigata	RLG00000002179 RLG00000020367
rosa_multiflora	Rmu_sc0002345.1_g000002 Rmu_sc0012763.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098480
rosa_rugosa	Rorug02G0409100
rosa_samantha	Rh2AG468500 Rh2BG481200 Rh2CG454700 Rh2DG490000 Rh7AG339700 Rh7CG357700 Rh7DG338400
rosa_wichuraiana	Rw2G038160 Rw7G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	51
AciI	CCGC	1 cut(s)	319
AclWI	GGATC	2 cut(s)	127, 197
AcvI	CACGTG	1 cut(s)	258
AcyI	GRCGYC	1 cut(s)	304
AflIII	ACRYGT	2 cut(s)	257, 514
AgsI	TTSAA	5 cut(s)	50, 121, 181, 338, 354
AjiI	CACGTC	1 cut(s)	515
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	2 cut(s)	23, 507
AluI	AGCT	2 cut(s)	23, 507
Alw26I	GTCTC	3 cut(s)	236, 324, 505
AlwI	GGATC	2 cut(s)	127, 197
Ama87I	CYCGRG	1 cut(s)	508
ApeKI	GCWGC	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	68, 139
AsuHPI	GGTGA	3 cut(s)	89, 308, 544
AvaI	CYCGRG	1 cut(s)	508
AvaII	GGWCC	2 cut(s)	68, 139
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	36
BbrPI	CACGTG	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	4 cut(s)	23, 315, 321, 441
BciT130I	CCWGG	1 cut(s)	137
BclI	TGATCA	1 cut(s)	94
BcoDI	GTCTC	3 cut(s)	236, 324, 505
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	346
BfuAI	ACCTGC	1 cut(s)	51
BglII	AGATCT	1 cut(s)	488
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	2 cut(s)	68, 139
BmeT110I	CYCGRG	1 cut(s)	508
BmgBI	CACGTC	1 cut(s)	515
BmgT120I	GGNCC	2 cut(s)	68, 139
BmrFI	CCNGG	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	397
BsaAI	YACGTR	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	304
BsaJI	CCNNGG	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
BseBI	CCWGG	1 cut(s)	137
BseCI	ATCGAT	1 cut(s)	397
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	439
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	220
BseYI	CCCAGC	1 cut(s)	228
BshVI	ATCGAT	1 cut(s)	397
BsiHKCI	CYCGRG	1 cut(s)	508
BslFI	GGGAC	1 cut(s)	389
BsmAI	GTCTC	3 cut(s)	236, 324, 505
BsmBI	CGTCTC	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	389
BsoBI	CYCGRG	1 cut(s)	508
Bsp1286I	GDGCHC	2 cut(s)	8, 36
Bsp143I	GATC	5 cut(s)	94, 132, 189, 398, 488
BspACI	CCGC	1 cut(s)	319
BspCNI	CTCAG	1 cut(s)	438
BspDI	ATCGAT	1 cut(s)	397
BspMI	ACCTGC	1 cut(s)	51
BspPI	GGATC	2 cut(s)	127, 197
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	5 cut(s)	94, 132, 189, 398, 488
BssNI	GRCGYC	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	4 cut(s)	10, 293, 350, 410
BstACI	GRCGYC	1 cut(s)	304
BstBAI	YACGTR	1 cut(s)	258
BstDEI	CTNAG	2 cut(s)	279, 425
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	5 cut(s)	97, 135, 192, 401, 491
BstMAI	GTCTC	3 cut(s)	236, 324, 505
BstMBI	GATC	5 cut(s)	94, 132, 189, 398, 488
BstMWI	GCNNNNNNNGC	2 cut(s)	426, 483
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	346
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	220
BstX2I	RGATCY	2 cut(s)	189, 488
BstXI	CCANNNNNNTGG	1 cut(s)	203
BstYI	RGATCY	2 cut(s)	189, 488
Bsu15I	ATCGAT	1 cut(s)	397
BsuTUI	ATCGAT	1 cut(s)	397
BtrI	CACGTC	1 cut(s)	515
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	6
BveI	ACCTGC	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	68, 139
ClaI	ATCGAT	1 cut(s)	397
CseI	GACGC	1 cut(s)	312
CspCI	CAANNNNNGTGG	2 cut(s)	419, 454
CviAII	CATG	3 cut(s)	237, 416, 443
CviJI	RGCY	7 cut(s)	23, 34, 213, 233, 429, 499, 507
CviKI_1	RGCY	7 cut(s)	23, 34, 213, 233, 429, 499, 507
DdeI	CTNAG	2 cut(s)	279, 425
DpnI	GATC	5 cut(s)	96, 134, 191, 400, 490
DpnII	GATC	5 cut(s)	94, 132, 189, 398, 488
Eco130I	CCWWGG	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	36
Eco47I	GGWCC	2 cut(s)	68, 139
Eco72I	CACGTG	1 cut(s)	258
Eco88I	CYCGRG	1 cut(s)	508
EcoO109I	RGGNCCY	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	71
EcoT22I	ATGCAT	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	71
Esp3I	CGTCTC	1 cut(s)	505
FaeI	CATG	3 cut(s)	240, 419, 446
FaiI	YATR	7 cut(s)	103, 152, 238, 247, 417, 444, 467
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	3 cut(s)	236, 415, 442
FbaI	TGATCA	1 cut(s)	94
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	1 cut(s)	459
GluI	GCNGC	1 cut(s)	234
GsaI	CCCAGC	1 cut(s)	232
HgaI	GACGC	1 cut(s)	312
Hin1I	GRCGYC	1 cut(s)	304
Hin1II	CATG	3 cut(s)	240, 419, 446
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HpaI	GTTAAC	1 cut(s)	406
HphI	GGTGA	3 cut(s)	89, 308, 544
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188III	TCNNGA	3 cut(s)	66, 329, 510
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	3 cut(s)	297, 300, 306
HpyCH4III	ACNGT	4 cut(s)	10, 293, 350, 410
HpyCH4IV	ACGT	2 cut(s)	257, 514
HpyCH4V	TGCA	2 cut(s)	201, 236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	426, 483
HpyF3I	CTNAG	2 cut(s)	279, 425
HpySE526I	ACGT	2 cut(s)	257, 514
Hsp92I	GRCGYC	1 cut(s)	304
Hsp92II	CATG	3 cut(s)	240, 419, 446
Ksp22I	TGATCA	1 cut(s)	94
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	5 cut(s)	94, 132, 189, 398, 488
LpnPI	CCDG	5 cut(s)	51, 56, 122, 149, 214
Lsp1109I	GCAGC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	2 cut(s)	257, 514
MaeIII	GTNAC	3 cut(s)	146, 260, 532
MalI	GATC	5 cut(s)	96, 134, 191, 400, 490
MboI	GATC	5 cut(s)	94, 132, 189, 398, 488
MboII	GAAGA	2 cut(s)	157, 184
MflI	RGATCY	2 cut(s)	189, 488
MhlI	GDGCHC	2 cut(s)	8, 36
MluCI	AATT	3 cut(s)	57, 323, 379
MnlI	CCTC	3 cut(s)	224, 264, 276
Mph1103I	ATGCAT	1 cut(s)	203
MseI	TTAA	3 cut(s)	393, 405, 452
MslI	CAYNNNNRTG	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	426, 483
NdeII	GATC	5 cut(s)	94, 132, 189, 398, 488
NlaIII	CATG	3 cut(s)	240, 419, 446
NmeAIII	GCCGAG	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	532
NsiI	ATGCAT	1 cut(s)	203
NspI	RCATGY	1 cut(s)	240
PaeR7I	CTCGAG	1 cut(s)	508
PkrI	GCNGC	1 cut(s)	235
PmaCI	CACGTG	1 cut(s)	258
PmlI	CACGTG	1 cut(s)	258
Ppu21I	YACGTR	1 cut(s)	258
PpuMI	RGGWCCY	1 cut(s)	68
Psp5II	RGGWCCY	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	135
PspCI	CACGTG	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	68, 139
PspPPI	RGGWCCY	1 cut(s)	68
PsuI	RGATCY	2 cut(s)	189, 488
RseI	CAYNNNNRTG	1 cut(s)	441
SaqAI	TTAA	3 cut(s)	393, 405, 452
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	5 cut(s)	94, 132, 189, 398, 488
Sau96I	GGNCC	2 cut(s)	68, 139
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	2 cut(s)	8, 36
SetI	ASST	9 cut(s)	25, 45, 73, 102, 260, 452, 509, 517, 534
SfcI	CTRYAG	1 cut(s)	346
Sfr274I	CTCGAG	1 cut(s)	508
SinI	GGWCC	2 cut(s)	68, 139
SlaI	CTCGAG	1 cut(s)	508
SmiMI	CAYNNNNRTG	1 cut(s)	441
SmlI	CTYRAG	1 cut(s)	508
SmoI	CTYRAG	1 cut(s)	508
Sse9I	AATT	3 cut(s)	57, 323, 379
SsiI	CCGC	1 cut(s)	319
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	4 cut(s)	10, 293, 350, 410
TaiI	ACGT	2 cut(s)	260, 517
TaqI	TCGA	3 cut(s)	328, 397, 509
TasI	AATT	3 cut(s)	57, 323, 379
Tru1I	TTAA	3 cut(s)	393, 405, 452
Tru9I	TTAA	3 cut(s)	393, 405, 452
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	1 cut(s)	79
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	13
VpaK11BI	GGWCC	2 cut(s)	68, 139
XceI	RCATGY	1 cut(s)	240
XhoI	CTCGAG	1 cut(s)	508
XspI	CTAG	1 cut(s)	459
Zsp2I	ATGCAT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.