Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006593

Physical Location & Seq

Genomic Coordinates Reverse (-)

1833139 .. 1835007

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G025100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGGGATGTCATCAGTAAAGCTGTAGATGGGGTCGGTGGTCTACTTGAGAAGGCGTTCTTGGCTCCATTTAAGACTATGTTTGGTGGCTCATGCGAGGATGTGTGTTCAGGACCCTGGGATTTCGGTTGCTTTATTGAGCATCTATGTGTCTCCAGTCTGTTGAAACTGTTAATGATCTTGGTCCTCTGCTACATAACTTTATTATTCTTCTATCTATTATTTAAACTGGGGTTATTCCAATGCATTGGAAAAAGCCTCTGTAAGATGTGTTGGGCTGCATGTGAGACATACTGGTATGCACTAGAAGATATTACTTGTTTCTTGTGTTACAAACTAAAGAACACTAAGAGGGTAAACCGCCGTCGTCACCGTCGTCGCCGCCGCAGCCAATTTCGAGACATTGAGCAAGGATACAGTTCAAGCGAGGAAAATGATTTGTGGGATAACTATCATGAGTTAAATGTCAGCAGAAAGCGGAAGTCACTCAGCAGGAGAAGAAAGGATAAGCTGCAGAGCTCTGTTTACCCATCACGTAGGCACGGCACTCGTAGTCACCACCATGTAAGGTTAAAGTCTAGGGGAAGATCTGTGCGCATTGTGGGCAGATCCCAAAGGCCAAGAAGCTCGAGACATCTTCGATTAAGAAAAGTGAGAAATGTTCGAAGGCAAGCTAGAACATCGAAGAGGAGGAAACTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

27.73

Weight (kDa)

10.69

Isoelectric Point (pI)

81.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78922
fragaria_vesca	FvH4_4g20570 FvH4_6g36610 FvH4_6g36610 FvH4_6g36610
malus_domestica	MD04G1024200.v1.1 MD04G1024400.v1.1
prunus_persica	Prupe.3G025100_v2.0.a1 Prupe.3G025100_v2.0.a1
pyrus_communis	pycom04g02080
rosa_chinensis	RchiOBHm_Chr2g0149081
rosa_laevigata	RLG00000002179 RLG00000020367
rosa_multiflora	Rmu_sc0002345.1_g000002 Rmu_sc0012763.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098480
rosa_rugosa	Rorug02G0409100
rosa_samantha	Rh2AG468500 Rh2BG481200 Rh2CG454700 Rh2DG490000 Rh7AG339700 Rh7CG357700 Rh7DG338400
rosa_wichuraiana	Rw2G038160 Rw7G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	596
AccI	GTMKAC	1 cut(s)	43
AciI	CCGC	4 cut(s)	361, 382, 385, 478
AclWI	GGATC	1 cut(s)	603
AgsI	TTSAA	2 cut(s)	166, 423
AjnI	CCWGG	1 cut(s)	116
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	5 cut(s)	23, 511, 519, 627, 674
AluI	AGCT	5 cut(s)	23, 511, 519, 627, 674
Alw21I	GWGCWC	1 cut(s)	521
Alw26I	GTCTC	4 cut(s)	157, 281, 393, 625
AlwI	GGATC	1 cut(s)	603
Ama87I	CYCGRG	1 cut(s)	628
AoxI	GGCC	1 cut(s)	617
ApeKI	GCWGC	3 cut(s)	278, 387, 511
Asp700I	GAANNNNTTC	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	597
AspS9I	GGNCC	2 cut(s)	113, 184
AsuHPI	GGTGA	2 cut(s)	362, 548
AsuII	TTCGAA	1 cut(s)	664
AvaI	CYCGRG	1 cut(s)	628
AvaII	GGWCC	2 cut(s)	113, 184
BanII	GRGCYC	1 cut(s)	521
Bbv12I	GWGCWC	1 cut(s)	521
BbvI	GCAGC	3 cut(s)	265, 399, 498
BccI	CCATC	2 cut(s)	23, 538
BceAI	ACGGC	2 cut(s)	348, 559
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciT130I	CCWGG	1 cut(s)	118
BciVI	GTATCC	1 cut(s)	407
BcoDI	GTCTC	4 cut(s)	157, 281, 393, 625
BfaI	CTAG	3 cut(s)	305, 579, 675
BfmI	CTRYAG	2 cut(s)	24, 512
BfuI	GTATCC	1 cut(s)	407
BglII	AGATCT	1 cut(s)	587
BisI	GCNGC	5 cut(s)	279, 382, 385, 388, 512
BlsI	GCNGC	5 cut(s)	280, 383, 386, 389, 513
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	2 cut(s)	113, 184
BmeT110I	CYCGRG	1 cut(s)	628
BmgT120I	GGNCC	2 cut(s)	113, 184
BmiI	GGNNCC	2 cut(s)	66, 115
BmrFI	CCNGG	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	151
BmuI	ACTGGG	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	139
Bpu14I	TTCGAA	1 cut(s)	664
BpuEI	CTTGAG	1 cut(s)	68
BsaAI	YACGTR	1 cut(s)	536
BsaBI	GATNNNNATC	1 cut(s)	450
BsaJI	CCNNGG	2 cut(s)	116, 117
Bse1I	ACTGG	3 cut(s)	156, 234, 299
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	2 cut(s)	116, 117
BseGI	GGATG	2 cut(s)	13, 106
BseJI	GATNNNNATC	1 cut(s)	450
BseMII	CTCAG	1 cut(s)	502
BseNI	ACTGG	3 cut(s)	156, 234, 299
BseRI	GAGGAG	1 cut(s)	703
BseXI	GCAGC	3 cut(s)	265, 399, 498
BshFI	GGCC	1 cut(s)	619
BsiHKAI	GWGCWC	1 cut(s)	521
BsiHKCI	CYCGRG	1 cut(s)	628
BsmAI	GTCTC	4 cut(s)	157, 281, 393, 625
BsnI	GGCC	1 cut(s)	619
BsoBI	CYCGRG	1 cut(s)	628
Bsp119I	TTCGAA	1 cut(s)	664
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp143I	GATC	3 cut(s)	177, 587, 608
BspACI	CCGC	4 cut(s)	361, 382, 385, 478
BspANI	GGCC	1 cut(s)	619
BspCNI	CTCAG	1 cut(s)	501
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	66, 115
BspMAI	CTGCAG	1 cut(s)	516
BspPI	GGATC	1 cut(s)	603
BspT104I	TTCGAA	1 cut(s)	664
BsrI	ACTGG	3 cut(s)	156, 234, 299
BssECI	CCNNGG	2 cut(s)	116, 117
BssMI	GATC	3 cut(s)	177, 587, 608
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	3 cut(s)	171, 374, 419
Bst6I	CTCTTC	1 cut(s)	680
BstBAI	YACGTR	1 cut(s)	536
BstBI	TTCGAA	1 cut(s)	664
BstC8I	GCNNGC	1 cut(s)	672
BstDEI	CTNAG	3 cut(s)	348, 488, 698
BstF5I	GGATG	2 cut(s)	13, 106
BstHHI	GCGC	1 cut(s)	597
BstKTI	GATC	3 cut(s)	180, 590, 611
BstMAI	GTCTC	4 cut(s)	157, 281, 393, 625
BstMBI	GATC	3 cut(s)	177, 587, 608
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 387, 603
BstNI	CCWGG	1 cut(s)	118
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	116
BstSFI	CTRYAG	2 cut(s)	24, 512
BstV1I	GCAGC	3 cut(s)	265, 399, 498
BstX2I	RGATCY	2 cut(s)	587, 608
BstXI	CCANNNNNNTGG	1 cut(s)	248
BstYI	RGATCY	2 cut(s)	587, 608
BsuI	GTATCC	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	619
BtsCI	GGATG	2 cut(s)	13, 106
Cac8I	GCNNGC	1 cut(s)	672
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	1 cut(s)	597
Cfr13I	GGNCC	2 cut(s)	113, 184
CviAII	CATG	4 cut(s)	93, 282, 455, 563
DdeI	CTNAG	3 cut(s)	348, 488, 698
DpnI	GATC	3 cut(s)	179, 589, 610
DpnII	GATC	3 cut(s)	177, 587, 608
DraI	TTTAAA	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	680
EarI	CTCTTC	1 cut(s)	680
Ecl136II	GAGCTC	1 cut(s)	519
Eco24I	GRGCYC	1 cut(s)	521
Eco47I	GGWCC	2 cut(s)	113, 184
Eco53kI	GAGCTC	1 cut(s)	519
Eco88I	CYCGRG	1 cut(s)	628
EcoICRI	GAGCTC	1 cut(s)	519
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	116
EcoT22I	ATGCAT	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	521
FaeI	CATG	4 cut(s)	96, 285, 458, 566
FaiI	YATR	9 cut(s)	80, 94, 148, 197, 283, 292, 300, 456, 564
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FatI	CATG	4 cut(s)	92, 281, 454, 562
FblI	GTMKAC	1 cut(s)	43
Fnu4HI	GCNGC	5 cut(s)	279, 382, 385, 388, 512
FokI	GGATG	2 cut(s)	20, 113
FriOI	GRGCYC	1 cut(s)	521
Fsp4HI	GCNGC	5 cut(s)	279, 382, 385, 388, 512
FspAI	RTGCGCAY	1 cut(s)	596
FspBI	CTAG	3 cut(s)	305, 579, 675
FspI	TGCGCA	1 cut(s)	596
GlaI	GCGC	1 cut(s)	596
GluI	GCNGC	5 cut(s)	279, 382, 385, 388, 512
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	1 cut(s)	619
HhaI	GCGC	1 cut(s)	597
Hin1II	CATG	4 cut(s)	96, 285, 458, 566
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HphI	GGTGA	2 cut(s)	362, 548
Hpy166II	GTNNAC	3 cut(s)	44, 358, 526
Hpy188III	TCNNGA	4 cut(s)	111, 398, 455, 630
Hpy8I	GTNNAC	3 cut(s)	44, 358, 526
Hpy99I	CGWCG	3 cut(s)	369, 378, 381
HpyAV	CCTTC	2 cut(s)	46, 660
HpyCH4III	ACNGT	3 cut(s)	171, 374, 419
HpyCH4IV	ACGT	1 cut(s)	535
HpyCH4V	TGCA	4 cut(s)	246, 281, 302, 514
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 387, 603
HpyF3I	CTNAG	3 cut(s)	348, 488, 698
HpySE526I	ACGT	1 cut(s)	535
Hsp92II	CATG	4 cut(s)	96, 285, 458, 566
HspAI	GCGC	1 cut(s)	595
Kzo9I	GATC	3 cut(s)	177, 587, 608
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	7 cut(s)	96, 103, 130, 169, 215, 280, 478
Lsp1109I	GCAGC	3 cut(s)	265, 399, 498
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	3 cut(s)	305, 579, 675
MaeII	ACGT	1 cut(s)	535
MaeIII	GTNAC	4 cut(s)	329, 368, 483, 554
MalI	GATC	3 cut(s)	179, 589, 610
MboI	GATC	3 cut(s)	177, 587, 608
MboII	GAAGA	6 cut(s)	202, 320, 510, 597, 629, 697
MflI	RGATCY	2 cut(s)	587, 608
MhlI	GDGCHC	1 cut(s)	521
MluCI	AATT	1 cut(s)	392
MnlI	CCTC	7 cut(s)	91, 197, 269, 345, 421, 681, 684
Mph1103I	ATGCAT	1 cut(s)	248
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	6 cut(s)	72, 173, 225, 461, 572, 644
MslI	CAYNNNNRTG	2 cut(s)	147, 561
MspR9I	CCNGG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	3 cut(s)	62, 387, 603
NdeII	GATC	3 cut(s)	177, 587, 608
NlaIII	CATG	4 cut(s)	96, 285, 458, 566
NlaIV	GGNNCC	2 cut(s)	66, 115
NmuCI	GTSAC	3 cut(s)	368, 483, 554
NsbI	TGCGCA	1 cut(s)	596
NsiI	ATGCAT	1 cut(s)	248
NspI	RCATGY	1 cut(s)	285
NspV	TTCGAA	1 cut(s)	664
PaeR7I	CTCGAG	1 cut(s)	628
PagI	TCATGA	1 cut(s)	454
PasI	CCCWGGG	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	56
PkrI	GCNGC	5 cut(s)	280, 383, 386, 389, 513
Ppu21I	YACGTR	1 cut(s)	536
PpuMI	RGGWCCY	1 cut(s)	113
Psp124BI	GAGCTC	1 cut(s)	521
Psp5II	RGGWCCY	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	2 cut(s)	66, 115
PspPI	GGNCC	2 cut(s)	113, 184
PspPPI	RGGWCCY	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	516
PsuI	RGATCY	2 cut(s)	587, 608
RseI	CAYNNNNRTG	2 cut(s)	147, 561
SacI	GAGCTC	1 cut(s)	521
SaqAI	TTAA	6 cut(s)	72, 173, 225, 461, 572, 644
SatI	GCNGC	5 cut(s)	279, 382, 385, 388, 512
Sau3AI	GATC	3 cut(s)	177, 587, 608
Sau96I	GGNCC	2 cut(s)	113, 184
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	521
SetI	ASST	8 cut(s)	25, 513, 521, 538, 572, 629, 676, 704
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	2 cut(s)	24, 512
Sfr274I	CTCGAG	1 cut(s)	628
SfuI	TTCGAA	1 cut(s)	664
SinI	GGWCC	2 cut(s)	113, 184
SlaI	CTCGAG	1 cut(s)	628
SmiMI	CAYNNNNRTG	2 cut(s)	147, 561
SmlI	CTYRAG	2 cut(s)	47, 628
SmoI	CTYRAG	2 cut(s)	47, 628
Sse9I	AATT	1 cut(s)	392
SsiI	CCGC	4 cut(s)	361, 382, 385, 478
SspMI	CTAG	3 cut(s)	305, 579, 675
SstI	GAGCTC	1 cut(s)	521
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	3 cut(s)	171, 374, 419
TaiI	ACGT	1 cut(s)	538
TaqI	TCGA	5 cut(s)	397, 629, 640, 664, 683
TasI	AATT	1 cut(s)	392
TauI	GCSGC	2 cut(s)	384, 387
Tru1I	TTAA	6 cut(s)	72, 173, 225, 461, 572, 644
Tru9I	TTAA	6 cut(s)	72, 173, 225, 461, 572, 644
TseFI	GTSAC	3 cut(s)	368, 483, 554
TseI	GCWGC	3 cut(s)	278, 387, 511
Tsp45I	GTSAC	3 cut(s)	368, 483, 554
VpaK11BI	GGWCC	2 cut(s)	113, 184
XceI	RCATGY	1 cut(s)	285
XhoI	CTCGAG	1 cut(s)	628
XmiI	GTMKAC	1 cut(s)	43
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	3 cut(s)	305, 579, 675
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.