Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006593

Physical Location & Seq

Genomic Coordinates Forward (+)

44179886 .. 44182244

Gene Structure 2359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG357700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGCACTGTCATCAGTAAAGCTACGGATGGGCTCGGCGACCTGCTTGAAAAAACATTTTTGTCTCCATTTAAGACTATGTTTGATGGATCATGCCAGGAGTGTTCAGGACCTTGGGATTTGATTTGTTTCATTGATCATCTATGCGTGTCCAATCTGTTGAAACTGCTTGTGATCCTGGTCCTTTGTTACATAACATTACTATTCTTCTATTTAGTATTCAAGTTGGGGATCTTCCAATGCATTGGAAAAAGCCTCTGTAAAATGTGCTGGGCTGCATGTGAGACATATTGGTTGGCACTACATGATATTTGTAGTTTCATGTGGTACAAGTTGAGGAACACTAAGAGGATAAACCGTCGTCGCCGACGCCATCTCCATCACCGCCAATTTCGAGACATTGAACAAGACTACAGTTCAAGTGGAGATAATGAGTTGTGGGACAATTATCGTAATCTTAATGTTAGTAGAAGGCGAAAGTCACTCAGCAGGAGAAGAAAAGATAGGGTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

20.37

Weight (kDa)

9.44

Isoelectric Point (pI)

63.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78922
fragaria_vesca	FvH4_4g20570 FvH4_6g36610 FvH4_6g36610 FvH4_6g36610
malus_domestica	MD04G1024200.v1.1 MD04G1024400.v1.1
prunus_persica	Prupe.3G025100_v2.0.a1 Prupe.3G025100_v2.0.a1
pyrus_communis	pycom04g02080
rosa_chinensis	RchiOBHm_Chr2g0149081
rosa_laevigata	RLG00000002179 RLG00000020367
rosa_multiflora	Rmu_sc0002345.1_g000002 Rmu_sc0012763.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098480
rosa_rugosa	Rorug02G0409100
rosa_samantha	Rh2AG468500 Rh2BG481200 Rh2CG454700 Rh2DG490000 Rh7AG339700 Rh7CG357700 Rh7DG338400
rosa_wichuraiana	Rw2G038160 Rw7G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	51
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	3 cut(s)	97, 169, 239
AcyI	GRCGYC	1 cut(s)	370
AfaI	GTAC	1 cut(s)	329
AgsI	TTSAA	5 cut(s)	50, 163, 223, 404, 420
AjnI	CCWGG	2 cut(s)	96, 177
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw26I	GTCTC	3 cut(s)	69, 278, 390
AlwI	GGATC	3 cut(s)	97, 169, 239
ApeKI	GCWGC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	110, 181
AsuHPI	GGTGA	1 cut(s)	374
AvaII	GGWCC	2 cut(s)	110, 181
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	4 cut(s)	23, 80, 381, 387
BciT130I	CCWGG	2 cut(s)	98, 179
BclI	TGATCA	1 cut(s)	136
BcoDI	GTCTC	3 cut(s)	69, 278, 390
BfmI	CTRYAG	1 cut(s)	412
BfuAI	ACCTGC	1 cut(s)	51
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	98, 179
Bme18I	GGWCC	2 cut(s)	110, 181
BmgT120I	GGNCC	2 cut(s)	110, 181
BmrFI	CCNGG	2 cut(s)	98, 179
BsaHI	GRCGYC	1 cut(s)	370
BsaJI	CCNNGG	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
BseBI	CCWGG	2 cut(s)	98, 179
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	499
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	262
BseYI	CCCAGC	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	455
BsmAI	GTCTC	3 cut(s)	69, 278, 390
BsmFI	GGGAC	1 cut(s)	455
Bsp1286I	GDGCHC	2 cut(s)	8, 36
Bsp143I	GATC	4 cut(s)	89, 136, 174, 231
BspACI	CCGC	1 cut(s)	385
BspCNI	CTCAG	1 cut(s)	498
BspMI	ACCTGC	1 cut(s)	51
BspPI	GGATC	3 cut(s)	97, 169, 239
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	4 cut(s)	89, 136, 174, 231
BssNI	GRCGYC	1 cut(s)	370
BssT1I	CCWWGG	1 cut(s)	113
Bst2UI	CCWGG	2 cut(s)	98, 179
Bst4CI	ACNGT	3 cut(s)	10, 359, 416
BstACI	GRCGYC	1 cut(s)	370
BstDEI	CTNAG	2 cut(s)	345, 485
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	4 cut(s)	92, 139, 177, 234
BstMAI	GTCTC	3 cut(s)	69, 278, 390
BstMBI	GATC	4 cut(s)	89, 136, 174, 231
BstNI	CCWGG	2 cut(s)	98, 179
BstNSI	RCATGY	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	96, 177
BstSFI	CTRYAG	1 cut(s)	412
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	231
BstXI	CCANNNNNNTGG	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	6
BveI	ACCTGC	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	110, 181
CseI	GACGC	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	4 cut(s)	93, 279, 305, 322
CviJI	RGCY	4 cut(s)	23, 34, 255, 275
CviKI_1	RGCY	4 cut(s)	23, 34, 255, 275
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	2 cut(s)	345, 485
DpnI	GATC	4 cut(s)	91, 138, 176, 233
DpnII	GATC	4 cut(s)	89, 136, 174, 231
Eco130I	CCWWGG	1 cut(s)	113
Eco24I	GRGCYC	1 cut(s)	36
Eco47I	GGWCC	2 cut(s)	110, 181
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	2 cut(s)	96, 177
EcoT14I	CCWWGG	1 cut(s)	113
EcoT22I	ATGCAT	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	4 cut(s)	96, 282, 308, 325
FaiI	YATR	8 cut(s)	80, 94, 145, 194, 280, 289, 306, 323
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	4 cut(s)	92, 278, 304, 321
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	276
GluI	GCNGC	1 cut(s)	276
GsaI	CCCAGC	1 cut(s)	274
HgaI	GACGC	1 cut(s)	378
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	4 cut(s)	96, 282, 308, 325
HphI	GGTGA	1 cut(s)	374
Hpy188III	TCNNGA	2 cut(s)	108, 395
Hpy99I	CGWCG	3 cut(s)	363, 366, 372
HpyAV	CCTTC	1 cut(s)	465
HpyCH4III	ACNGT	3 cut(s)	10, 359, 416
HpyCH4V	TGCA	3 cut(s)	243, 278, 511
HpyF3I	CTNAG	2 cut(s)	345, 485
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	4 cut(s)	96, 282, 308, 325
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	4 cut(s)	89, 136, 174, 231
LpnPI	CCDG	8 cut(s)	56, 83, 93, 110, 164, 191, 256, 475
Lsp1109I	GCAGC	1 cut(s)	262
MaeIII	GTNAC	2 cut(s)	188, 480
MalI	GATC	4 cut(s)	91, 138, 176, 233
MboI	GATC	4 cut(s)	89, 136, 174, 231
MboII	GAAGA	3 cut(s)	199, 226, 507
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	2 cut(s)	8, 36
MluCI	AATT	2 cut(s)	389, 445
MnlI	CCTC	3 cut(s)	266, 330, 342
Mph1103I	ATGCAT	1 cut(s)	245
MseI	TTAA	2 cut(s)	72, 459
MspR9I	CCNGG	2 cut(s)	98, 179
MvaI	CCWGG	2 cut(s)	98, 179
NdeII	GATC	4 cut(s)	89, 136, 174, 231
NlaIII	CATG	4 cut(s)	96, 282, 308, 325
NmeAIII	GCCGAG	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	480
NsiI	ATGCAT	1 cut(s)	245
NspI	RCATGY	1 cut(s)	282
PkrI	GCNGC	1 cut(s)	277
PpuMI	RGGWCCY	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	96, 177
PspFI	CCCAGC	1 cut(s)	270
PspGI	CCWGG	2 cut(s)	96, 177
PspPI	GGNCC	2 cut(s)	110, 181
PspPPI	RGGWCCY	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	231
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SaqAI	TTAA	2 cut(s)	72, 459
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	4 cut(s)	89, 136, 174, 231
Sau96I	GGNCC	2 cut(s)	110, 181
ScrFI	CCNGG	2 cut(s)	98, 179
SduI	GDGCHC	2 cut(s)	8, 36
SetI	ASST	3 cut(s)	25, 45, 115
SfcI	CTRYAG	1 cut(s)	412
SinI	GGWCC	2 cut(s)	110, 181
Sse9I	AATT	2 cut(s)	389, 445
SsiI	CCGC	1 cut(s)	385
StyD4I	CCNGG	2 cut(s)	96, 177
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	3 cut(s)	10, 359, 416
TaqI	TCGA	1 cut(s)	394
TasI	AATT	2 cut(s)	389, 445
Tru1I	TTAA	2 cut(s)	72, 459
Tru9I	TTAA	2 cut(s)	72, 459
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	480
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	480
TspDTI	ATGAA	2 cut(s)	121, 310
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	13
VpaK11BI	GGWCC	2 cut(s)	110, 181
XceI	RCATGY	1 cut(s)	282
Zsp2I	ATGCAT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.