Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006593

Physical Location & Seq

Genomic Coordinates Forward (+)

28813973 .. 28817044

Gene Structure 3072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g36610.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTTCTTCTTTGCAGCATTACTTTTCTTTTATTTAGTATTCAAGTTGGGGATCTTCCAATGCATTGGAAAAAGCCTCTGTAAGATGTGTTGGGCTGCATGTGAGACATATTGGTTTGCACTGCAAGATATTTGTTGTTTCTTGTGGTACAAGTTGAGCAACACTAAGAGGGTAAACCGTCGTCGCAGGCGCCATCTCCGCCACCGCCAATTTCAAGACATTGAAGAAGGCTACAGTTCAAGTGGGGATAATGATTTATGGGACGATTATCATAATCTTAATGTTAGTAGAAAGCGAAAGTCACTTAGCAGGAGAAGAAGAGATAGGGTGCAGAGGTCTGTTCACCTTTCGAGTAGGCATGGCAGTCGAAGTCACCATCATCGGCATGTAAGGTTAAAGACTAGAAGTATGTATGTTCGTGTTATGGGCAGGTCTCAAAGGCTAAAAAGCTCGAGACATGTGAAAATCGGCAAGGTGACAAGTGTTCGCAGGAAAACCAGAACTTCTAAGAGGAGGAGGCTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

21.41

Weight (kDa)

11.62

Isoelectric Point (pI)

90.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78922
fragaria_vesca	FvH4_4g20570 FvH4_6g36610 FvH4_6g36610 FvH4_6g36610
malus_domestica	MD04G1024200.v1.1 MD04G1024400.v1.1
prunus_persica	Prupe.3G025100_v2.0.a1 Prupe.3G025100_v2.0.a1
pyrus_communis	pycom04g02080
rosa_chinensis	RchiOBHm_Chr2g0149081
rosa_laevigata	RLG00000002179 RLG00000020367
rosa_multiflora	Rmu_sc0002345.1_g000002 Rmu_sc0012763.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098480
rosa_rugosa	Rorug02G0409100
rosa_samantha	Rh2AG468500 Rh2BG481200 Rh2CG454700 Rh2DG490000 Rh7AG339700 Rh7CG357700 Rh7DG338400
rosa_wichuraiana	Rw2G038160 Rw7G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	420
AccB1I	GGYRCC	1 cut(s)	189
AciI	CCGC	2 cut(s)	199, 205
AclWI	GGATC	1 cut(s)	59
AcyI	GRCGYC	1 cut(s)	190
AfaI	GTAC	1 cut(s)	149
AflIII	ACRYGT	1 cut(s)	457
AgsI	TTSAA	4 cut(s)	43, 215, 224, 240
AluBI	AGCT	1 cut(s)	450
AluI	AGCT	1 cut(s)	450
Alw26I	GTCTC	3 cut(s)	98, 438, 448
AlwI	GGATC	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	451
ApeKI	GCWGC	2 cut(s)	14, 95
AspLEI	GCGC	1 cut(s)	192
AsuHPI	GGTGA	3 cut(s)	335, 365, 487
AvaI	CYCGRG	1 cut(s)	451
BanI	GGYRCC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	26, 82
BccI	CCATC	2 cut(s)	201, 384
BcgI	CGANNNNNNTGC	2 cut(s)	347, 381
BcoDI	GTCTC	3 cut(s)	98, 438, 448
BfaI	CTAG	1 cut(s)	402
BfmI	CTRYAG	1 cut(s)	232
BfoI	RGCGCY	1 cut(s)	193
BfuAI	ACCTGC	1 cut(s)	420
BisI	GCNGC	2 cut(s)	15, 96
BlsI	GCNGC	2 cut(s)	16, 97
BmeT110I	CYCGRG	1 cut(s)	451
BmiI	GGNNCC	1 cut(s)	191
Bpu10I	CCTNAGC	1 cut(s)	521
BsaHI	GRCGYC	1 cut(s)	190
BsaI	GGTCTC	1 cut(s)	438
BseRI	GAGGAG	1 cut(s)	526
BseXI	GCAGC	2 cut(s)	26, 82
BsgI	GTGCAG	1 cut(s)	350
BshNI	GGYRCC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	451
BslFI	GGGAC	1 cut(s)	275
BsmAI	GTCTC	3 cut(s)	98, 438, 448
BsmFI	GGGAC	1 cut(s)	275
Bso31I	GGTCTC	1 cut(s)	438
BsoBI	CYCGRG	1 cut(s)	451
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	2 cut(s)	199, 205
BspLI	GGNNCC	1 cut(s)	191
BspMI	ACCTGC	1 cut(s)	420
BspPI	GGATC	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	189
BspTNI	GGTCTC	1 cut(s)	438
BssMI	GATC	1 cut(s)	51
BssNI	GRCGYC	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	179, 236
Bst6I	CTCTTC	1 cut(s)	313
BstACI	GRCGYC	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	4 cut(s)	165, 305, 507, 521
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	3 cut(s)	98, 438, 448
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstNSI	RCATGY	3 cut(s)	102, 389, 461
BstSFI	CTRYAG	1 cut(s)	232
BstV1I	GCAGC	2 cut(s)	26, 82
BstX2I	RGATCY	1 cut(s)	51
BstXI	CCANNNNNNTGG	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	51
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	119
BveI	ACCTGC	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	188
CfoI	GCGC	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	4 cut(s)	99, 359, 386, 458
CviJI	RGCY	6 cut(s)	75, 95, 231, 442, 450, 520
CviKI_1	RGCY	6 cut(s)	75, 95, 231, 442, 450, 520
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	4 cut(s)	165, 305, 507, 521
DinI	GGCGCC	1 cut(s)	191
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
EciI	GGCGGA	1 cut(s)	188
Eco31I	GGTCTC	1 cut(s)	438
Eco88I	CYCGRG	1 cut(s)	451
EcoT22I	ATGCAT	1 cut(s)	65
EgeI	GGCGCC	1 cut(s)	191
EheI	GGCGCC	1 cut(s)	191
FaeI	CATG	4 cut(s)	102, 362, 389, 461
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	4 cut(s)	98, 358, 385, 457
Fnu4HI	GCNGC	2 cut(s)	15, 96
Fsp4HI	GCNGC	2 cut(s)	15, 96
FspBI	CTAG	1 cut(s)	402
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	2 cut(s)	15, 96
HaeII	RGCGCY	1 cut(s)	193
HhaI	GCGC	1 cut(s)	192
Hin1I	GRCGYC	1 cut(s)	190
Hin1II	CATG	4 cut(s)	102, 362, 389, 461
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HphI	GGTGA	3 cut(s)	335, 365, 487
Hpy166II	GTNNAC	2 cut(s)	175, 343
Hpy188III	TCNNGA	2 cut(s)	215, 453
Hpy8I	GTNNAC	2 cut(s)	175, 343
Hpy99I	CGWCG	2 cut(s)	183, 186
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	2 cut(s)	179, 236
HpyCH4V	TGCA	6 cut(s)	14, 63, 98, 119, 124, 331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpyF3I	CTNAG	4 cut(s)	165, 305, 507, 521
Hsp92I	GRCGYC	1 cut(s)	190
Hsp92II	CATG	4 cut(s)	102, 362, 389, 461
HspAI	GCGC	1 cut(s)	190
KasI	GGCGCC	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	51
LpnPI	CCDG	5 cut(s)	172, 295, 415, 475, 511
Lsp1109I	GCAGC	2 cut(s)	26, 82
MaeI	CTAG	1 cut(s)	402
MaeIII	GTNAC	3 cut(s)	300, 371, 475
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	4 cut(s)	46, 236, 327, 330
MflI	RGATCY	1 cut(s)	51
MluCI	AATT	1 cut(s)	209
Mly113I	GGCGCC	1 cut(s)	190
MnlI	CCTC	6 cut(s)	86, 162, 327, 504, 507, 510
Mph1103I	ATGCAT	1 cut(s)	65
MseI	TTAA	2 cut(s)	279, 395
MslI	CAYNNNNRTG	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	198
NarI	GGCGCC	1 cut(s)	190
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	4 cut(s)	102, 362, 389, 461
NlaIV	GGNNCC	1 cut(s)	191
NmuCI	GTSAC	3 cut(s)	300, 371, 475
NsiI	ATGCAT	1 cut(s)	65
NspI	RCATGY	3 cut(s)	102, 389, 461
PaeR7I	CTCGAG	1 cut(s)	451
PciI	ACATGT	1 cut(s)	457
PkrI	GCNGC	2 cut(s)	16, 97
PluTI	GGCGCC	1 cut(s)	193
PscI	ACATGT	1 cut(s)	457
PspN4I	GGNNCC	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	51
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	279, 395
SatI	GCNGC	2 cut(s)	15, 96
Sau3AI	GATC	1 cut(s)	51
SetI	ASST	7 cut(s)	338, 348, 395, 434, 452, 477, 527
SfcI	CTRYAG	1 cut(s)	232
SfoI	GGCGCC	1 cut(s)	191
Sfr274I	CTCGAG	1 cut(s)	451
SlaI	CTCGAG	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
Sse9I	AATT	1 cut(s)	209
SsiI	CCGC	2 cut(s)	199, 205
SspDI	GGCGCC	1 cut(s)	189
SspMI	CTAG	1 cut(s)	402
TaaI	ACNGT	2 cut(s)	179, 236
TaqI	TCGA	3 cut(s)	350, 367, 452
TasI	AATT	1 cut(s)	209
Tru1I	TTAA	2 cut(s)	279, 395
Tru9I	TTAA	2 cut(s)	279, 395
TscAI	CASTG	1 cut(s)	126
TseFI	GTSAC	3 cut(s)	300, 371, 475
TseI	GCWGC	2 cut(s)	14, 95
Tsp45I	GTSAC	3 cut(s)	300, 371, 475
TspRI	CASTG	1 cut(s)	126
XceI	RCATGY	3 cut(s)	102, 389, 461
XhoI	CTCGAG	1 cut(s)	451
XspI	CTAG	1 cut(s)	402
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.