Rh7DG338400

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0006593
Physical Location & Seq
Forward (+)
44500006 .. 44501714
1709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG338400.1

Sequence Viewer

Length: 534 bp
ATGTATTGGCATCTGTATTTGAGCGATTGGCATTTAATTGGGAAGGAGTTGGCTGCAGTAAACAGTGTTAAGAACTTCCTCTTGCAATGGGCACTGTCATCAGTAAAGCTACAGATGGGCTCGGCGACCTGCTTGAAAAAACAATTGTCTCCATTTAAGACTATGTTTGATGGATCATGCCAGGAGTGTTCAGGACCTTGGGATTTGGTTTGTTTCATTGATCATCTATGCGTGTCCAAACTGTTGAAACTGCTTGTGATCCTGGTCCTTTGTTACATAACATTACTATTCTTCTATTTAGTATTCAAGTTGGGGATCTTCCAATGCATTGGAAAAAGCCTCTGTAAAATGTGCTGGGCTGCATGTGAGACATATTGGTTGGCACTACATGATATTTGTAGTTTCACGTGGTACAAGTTGAGGAACCCTAAGAGGATAAACCGTCGTCGCCGACGCCATCCCCATCACCGCCAATTTCAAGACATTGAACAAGACTACAGTTCAAGTGGAGAAAATGAGTTGTGGGACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

20.94

Weight (kDa)

8.86

Isoelectric Point (pI)

54.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 137
AciI CCGC 1 cut(s) 469
AclWI GGATC 3 cut(s) 181, 253, 323
AcvI CACGTG 1 cut(s) 408
AcyI GRCGYC 1 cut(s) 454
AfaI GTAC 1 cut(s) 413
AgsI TTSAA 6 cut(s) 136, 247, 307, 479, 488, 504
AjnI CCWGG 2 cut(s) 180, 261
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw26I GTCTC 2 cut(s) 153, 362
AlwI GGATC 3 cut(s) 181, 253, 323
ApeKI GCWGC 2 cut(s) 53, 359
AspS9I GGNCC 2 cut(s) 194, 265
AsuHPI GGTGA 1 cut(s) 458
AvaII GGWCC 2 cut(s) 194, 265
BaeGI GKGCMC 1 cut(s) 94
BanII GRGCYC 1 cut(s) 122
BbrPI CACGTG 1 cut(s) 408
BbvI GCAGC 2 cut(s) 40, 346
BccI CCATC 4 cut(s) 109, 164, 465, 471
BciT130I CCWGG 2 cut(s) 182, 263
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 2 cut(s) 153, 362
BfmI CTRYAG 3 cut(s) 54, 110, 496
BfuAI ACCTGC 1 cut(s) 137
BisI GCNGC 2 cut(s) 54, 360
BlsI GCNGC 2 cut(s) 55, 361
Bme1390I CCNGG 2 cut(s) 182, 263
Bme18I GGWCC 2 cut(s) 194, 265
BmgT120I GGNCC 2 cut(s) 194, 265
BmiI GGNNCC 1 cut(s) 425
BmrFI CCNGG 2 cut(s) 182, 263
BmsI GCATC 1 cut(s) 19
BsaAI YACGTR 1 cut(s) 408
BsaHI GRCGYC 1 cut(s) 454
BsaJI CCNNGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 92
BseBI CCWGG 2 cut(s) 182, 263
BseDI CCNNGG 1 cut(s) 197
BseGI GGATG 1 cut(s) 457
BseMI GCAATG 1 cut(s) 92
BseSI GKGCMC 1 cut(s) 94
BseXI GCAGC 2 cut(s) 40, 346
BseYI CCCAGC 1 cut(s) 354
BsmAI GTCTC 2 cut(s) 153, 362
Bsp1286I GDGCHC 2 cut(s) 94, 122
Bsp143I GATC 4 cut(s) 173, 220, 258, 315
BspACI CCGC 1 cut(s) 469
BspLI GGNNCC 1 cut(s) 425
BspMAI CTGCAG 1 cut(s) 58
BspMI ACCTGC 1 cut(s) 137
BspPI GGATC 3 cut(s) 181, 253, 323
BsrDI GCAATG 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 4 cut(s) 173, 220, 258, 315
BssNI GRCGYC 1 cut(s) 454
BssT1I CCWWGG 1 cut(s) 197
Bst2UI CCWGG 2 cut(s) 182, 263
Bst4CI ACNGT 5 cut(s) 65, 96, 243, 443, 500
BstACI GRCGYC 1 cut(s) 454
BstBAI YACGTR 1 cut(s) 408
BstDEI CTNAG 1 cut(s) 429
BstF5I GGATG 1 cut(s) 457
BstKTI GATC 4 cut(s) 176, 223, 261, 318
BstMAI GTCTC 2 cut(s) 153, 362
BstMBI GATC 4 cut(s) 173, 220, 258, 315
BstNI CCWGG 2 cut(s) 182, 263
BstNSI RCATGY 1 cut(s) 366
BstSCI CCNGG 2 cut(s) 180, 261
BstSFI CTRYAG 3 cut(s) 54, 110, 496
BstSLI GKGCMC 1 cut(s) 94
BstV1I GCAGC 2 cut(s) 40, 346
BstX2I RGATCY 1 cut(s) 315
BstXI CCANNNNNNTGG 1 cut(s) 329
BstYI RGATCY 1 cut(s) 315
BtsCI GGATG 1 cut(s) 457
BtsIMutI CAGTG 2 cut(s) 70, 92
BveI ACCTGC 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 194, 265
CseI GACGC 1 cut(s) 462
Csp6I GTAC 1 cut(s) 412
CviAII CATG 3 cut(s) 177, 363, 389
CviJI RGCY 5 cut(s) 53, 109, 120, 339, 359
CviKI_1 RGCY 5 cut(s) 53, 109, 120, 339, 359
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 1 cut(s) 429
DpnI GATC 4 cut(s) 175, 222, 260, 317
DpnII GATC 4 cut(s) 173, 220, 258, 315
Eco130I CCWWGG 1 cut(s) 197
Eco24I GRGCYC 1 cut(s) 122
Eco47I GGWCC 2 cut(s) 194, 265
Eco72I CACGTG 1 cut(s) 408
EcoO109I RGGNCCY 1 cut(s) 194
EcoRII CCWGG 2 cut(s) 180, 261
EcoT14I CCWWGG 1 cut(s) 197
EcoT22I ATGCAT 1 cut(s) 329
EcoT38I GRGCYC 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 197
FaeI CATG 3 cut(s) 180, 366, 392
FaiI YATR 7 cut(s) 164, 178, 229, 278, 364, 373, 390
FatI CATG 3 cut(s) 176, 362, 388
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 2 cut(s) 54, 360
FokI GGATG 1 cut(s) 444
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 2 cut(s) 54, 360
GluI GCNGC 2 cut(s) 54, 360
GsaI CCCAGC 1 cut(s) 358
HgaI GACGC 1 cut(s) 462
Hin1I GRCGYC 1 cut(s) 454
Hin1II CATG 3 cut(s) 180, 366, 392
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 1 cut(s) 61
Hpy188III TCNNGA 2 cut(s) 192, 479
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 3 cut(s) 447, 450, 456
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 5 cut(s) 65, 96, 243, 443, 500
HpyCH4IV ACGT 1 cut(s) 407
HpyCH4V TGCA 4 cut(s) 56, 85, 327, 362
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 1 cut(s) 407
Hsp92I GRCGYC 1 cut(s) 454
Hsp92II CATG 3 cut(s) 180, 366, 392
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 4 cut(s) 173, 220, 258, 315
LpnPI CCDG 7 cut(s) 142, 167, 177, 194, 248, 275, 340
Lsp1109I GCAGC 2 cut(s) 40, 346
LweI GCATC 1 cut(s) 19
MaeII ACGT 1 cut(s) 407
MaeIII GTNAC 1 cut(s) 272
MalI GATC 4 cut(s) 175, 222, 260, 317
MboI GATC 4 cut(s) 173, 220, 258, 315
MboII GAAGA 2 cut(s) 283, 310
MfeI CAATTG 1 cut(s) 143
MflI RGATCY 1 cut(s) 315
MhlI GDGCHC 2 cut(s) 94, 122
MluCI AATT 4 cut(s) 36, 143, 473, 529
MnlI CCTC 4 cut(s) 89, 350, 414, 426
Mph1103I ATGCAT 1 cut(s) 329
MseI TTAA 4 cut(s) 35, 69, 156, 532
MspR9I CCNGG 2 cut(s) 182, 263
MunI CAATTG 1 cut(s) 143
MvaI CCWGG 2 cut(s) 182, 263
NdeII GATC 4 cut(s) 173, 220, 258, 315
NlaIII CATG 3 cut(s) 180, 366, 392
NlaIV GGNNCC 1 cut(s) 425
NmeAIII GCCGAG 1 cut(s) 101
NsiI ATGCAT 1 cut(s) 329
NspI RCATGY 1 cut(s) 366
PkrI GCNGC 2 cut(s) 55, 361
PmaCI CACGTG 1 cut(s) 408
PmlI CACGTG 1 cut(s) 408
Ppu21I YACGTR 1 cut(s) 408
PpuMI RGGWCCY 1 cut(s) 194
Psp5II RGGWCCY 1 cut(s) 194
Psp6I CCWGG 2 cut(s) 180, 261
PspCI CACGTG 1 cut(s) 408
PspFI CCCAGC 1 cut(s) 354
PspGI CCWGG 2 cut(s) 180, 261
PspN4I GGNNCC 1 cut(s) 425
PspPI GGNCC 2 cut(s) 194, 265
PspPPI RGGWCCY 1 cut(s) 194
PstI CTGCAG 1 cut(s) 58
PsuI RGATCY 1 cut(s) 315
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
SaqAI TTAA 4 cut(s) 35, 69, 156, 532
SatI GCNGC 2 cut(s) 54, 360
Sau3AI GATC 4 cut(s) 173, 220, 258, 315
Sau96I GGNCC 2 cut(s) 194, 265
ScrFI CCNGG 2 cut(s) 182, 263
SduI GDGCHC 2 cut(s) 94, 122
SetI ASST 4 cut(s) 111, 131, 199, 410
SfaNI GCATC 1 cut(s) 19
SfcI CTRYAG 3 cut(s) 54, 110, 496
SinI GGWCC 2 cut(s) 194, 265
Sse9I AATT 4 cut(s) 36, 143, 473, 529
SsiI CCGC 1 cut(s) 469
StyD4I CCNGG 2 cut(s) 180, 261
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 5 cut(s) 65, 96, 243, 443, 500
TaiI ACGT 1 cut(s) 410
TasI AATT 4 cut(s) 36, 143, 473, 529
Tru1I TTAA 4 cut(s) 35, 69, 156, 532
Tru9I TTAA 4 cut(s) 35, 69, 156, 532
TscAI CASTG 2 cut(s) 70, 99
TseI GCWGC 2 cut(s) 53, 359
TspDTI ATGAA 1 cut(s) 205
TspRI CASTG 2 cut(s) 70, 99
VpaK11BI GGWCC 2 cut(s) 194, 265
XceI RCATGY 1 cut(s) 366
Zsp2I ATGCAT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.