Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006593

Physical Location & Seq

Genomic Coordinates Forward (+)

64282052 .. 64283211

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020367

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGGGATTGTCATCAGTAAAGCTACAGATGGGCTCGGCGACCTGCTTGAAAAAACATTTTTGTCTCCATTTAAGACTATGTTTGATGGATCATGCCATTTCGTGTGGTACAAGTTGAGGAACACTAAGAGGGTAAACCGTCGTCGCCAACGCCATCTCCGCCACCGCCAATTTCGGGACATTGAAGAAGGCTACAGTTCAAGTGGGGATAATGAGTTGTGGGACAATTATCGTAATCTTAATGTTAGTAGAAAGCGAAAGTCACTCAGCAGGAGAAGAAAAGATAGGGTGCAGAGCTCTGTTAACCGTTCGAGTAGGCATGGCACTCGCAGCCACCATCATCGTCATGTAAGGTTAAAGTCTAGGAGTACGTCTGTTCGCGTTACGGGCAGGTCTCAAAGGCTAAAAAGCTCGGGACGTGTGAAAATAAGCAAGGTAACAAATGTTCGAAGGAAAACCAGAACTTCTAAGAGGAGGAGGCTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

19.38

Weight (kDa)

12.0

Isoelectric Point (pI)

81.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78922
fragaria_vesca	FvH4_4g20570 FvH4_6g36610 FvH4_6g36610 FvH4_6g36610
malus_domestica	MD04G1024200.v1.1 MD04G1024400.v1.1
prunus_persica	Prupe.3G025100_v2.0.a1 Prupe.3G025100_v2.0.a1
pyrus_communis	pycom04g02080
rosa_chinensis	RchiOBHm_Chr2g0149081
rosa_laevigata	RLG00000002179 RLG00000020367
rosa_multiflora	Rmu_sc0002345.1_g000002 Rmu_sc0012763.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098480
rosa_rugosa	Rorug02G0409100
rosa_samantha	Rh2AG468500 Rh2BG481200 Rh2CG454700 Rh2DG490000 Rh7AG339700 Rh7CG357700 Rh7DG338400
rosa_wichuraiana	Rw2G038160 Rw7G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	51, 381
AccII	CGCG	1 cut(s)	381
AciI	CCGC	2 cut(s)	160, 166
AclWI	GGATC	1 cut(s)	97
AfaI	GTAC	2 cut(s)	110, 370
AfiI	CCNNNNNNNGG	1 cut(s)	175
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	3 cut(s)	50, 185, 201
AjiI	CACGTC	1 cut(s)	419
AluBI	AGCT	3 cut(s)	23, 297, 411
AluI	AGCT	3 cut(s)	23, 297, 411
Alw21I	GWGCWC	1 cut(s)	299
Alw26I	GTCTC	2 cut(s)	69, 399
AlwI	GGATC	1 cut(s)	97
Ama87I	CYCGRG	1 cut(s)	412
ApeKI	GCWGC	1 cut(s)	330
AsuII	TTCGAA	1 cut(s)	448
AvaI	CYCGRG	1 cut(s)	412
BanII	GRGCYC	2 cut(s)	36, 299
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	342
BccI	CCATC	4 cut(s)	23, 80, 162, 345
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BcoDI	GTCTC	2 cut(s)	69, 399
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	2 cut(s)	24, 193
BfuAI	ACCTGC	2 cut(s)	51, 381
BisI	GCNGC	1 cut(s)	331
BlsI	GCNGC	1 cut(s)	332
BmeT110I	CYCGRG	1 cut(s)	412
BmgBI	CACGTC	1 cut(s)	419
Bpu10I	CCTNAGC	1 cut(s)	482
Bpu14I	TTCGAA	1 cut(s)	448
BsaBI	GATNNNNATC	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	399
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse8I	GATNNNNATC	1 cut(s)	11
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	487
BseXI	GCAGC	1 cut(s)	342
BsgI	GTGCAG	1 cut(s)	311
Bsh1236I	CGCG	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	299
BsiHKCI	CYCGRG	1 cut(s)	412
BslFI	GGGAC	3 cut(s)	191, 236, 429
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	2 cut(s)	69, 399
BsmFI	GGGAC	3 cut(s)	191, 236, 429
Bso31I	GGTCTC	1 cut(s)	399
BsoBI	CYCGRG	1 cut(s)	412
Bsp119I	TTCGAA	1 cut(s)	448
Bsp1286I	GDGCHC	2 cut(s)	36, 299
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	2 cut(s)	160, 166
BspCNI	CTCAG	1 cut(s)	279
BspFNI	CGCG	1 cut(s)	381
BspMI	ACCTGC	2 cut(s)	51, 381
BspPI	GGATC	1 cut(s)	97
BspT104I	TTCGAA	1 cut(s)	448
BspTNI	GGTCTC	1 cut(s)	399
BssMI	GATC	1 cut(s)	89
Bst4CI	ACNGT	3 cut(s)	140, 197, 308
BstBI	TTCGAA	1 cut(s)	448
BstDEI	CTNAG	4 cut(s)	126, 266, 468, 482
BstFNI	CGCG	1 cut(s)	381
BstKTI	GATC	1 cut(s)	92
BstMAI	GTCTC	2 cut(s)	69, 399
BstMBI	GATC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 330, 387
BstSFI	CTRYAG	2 cut(s)	24, 193
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	342
BtrI	CACGTC	1 cut(s)	419
BveI	ACCTGC	2 cut(s)	51, 381
Csp6I	GTAC	2 cut(s)	109, 369
CviAII	CATG	3 cut(s)	93, 320, 347
CviJI	RGCY	8 cut(s)	23, 34, 192, 297, 333, 403, 411, 481
CviKI_1	RGCY	8 cut(s)	23, 34, 192, 297, 333, 403, 411, 481
CviQI	GTAC	2 cut(s)	109, 369
DdeI	CTNAG	4 cut(s)	126, 266, 468, 482
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
EciI	GGCGGA	1 cut(s)	149
Ecl136II	GAGCTC	1 cut(s)	297
Eco24I	GRGCYC	2 cut(s)	36, 299
Eco31I	GGTCTC	1 cut(s)	399
Eco53kI	GAGCTC	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	412
EcoICRI	GAGCTC	1 cut(s)	297
EcoT38I	GRGCYC	2 cut(s)	36, 299
FaeI	CATG	3 cut(s)	96, 323, 350
FaiI	YATR	4 cut(s)	80, 94, 321, 348
FaqI	GGGAC	3 cut(s)	191, 236, 429
FatI	CATG	3 cut(s)	92, 319, 346
Fnu4HI	GCNGC	1 cut(s)	331
FriOI	GRGCYC	2 cut(s)	36, 299
Fsp4HI	GCNGC	1 cut(s)	331
FspBI	CTAG	1 cut(s)	363
GluI	GCNGC	1 cut(s)	331
Hin1II	CATG	3 cut(s)	96, 323, 350
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HpaI	GTTAAC	1 cut(s)	304
Hpy166II	GTNNAC	2 cut(s)	136, 304
Hpy188III	TCNNGA	2 cut(s)	176, 414
Hpy8I	GTNNAC	2 cut(s)	136, 304
Hpy99I	CGWCG	2 cut(s)	144, 147
HpyAV	CCTTC	2 cut(s)	182, 444
HpyCH4III	ACNGT	3 cut(s)	140, 197, 308
HpyCH4IV	ACGT	2 cut(s)	371, 418
HpyCH4V	TGCA	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 330, 387
HpyF3I	CTNAG	4 cut(s)	126, 266, 468, 482
HpySE526I	ACGT	2 cut(s)	371, 418
Hsp92II	CATG	3 cut(s)	96, 323, 350
KspAI	GTTAAC	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	89
LpnPI	CCDG	4 cut(s)	56, 256, 376, 472
Lsp1109I	GCAGC	1 cut(s)	342
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	2 cut(s)	371, 418
MaeIII	GTNAC	3 cut(s)	261, 382, 436
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	2 cut(s)	197, 288
MhlI	GDGCHC	2 cut(s)	36, 299
MluCI	AATT	2 cut(s)	170, 226
MnlI	CCTC	5 cut(s)	111, 123, 465, 468, 471
MseI	TTAA	4 cut(s)	72, 240, 303, 356
MslI	CAYNNNNRTG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	159, 330, 387
NdeII	GATC	1 cut(s)	89
NlaIII	CATG	3 cut(s)	96, 323, 350
NmeAIII	GCCGAG	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	261
NspV	TTCGAA	1 cut(s)	448
PkrI	GCNGC	1 cut(s)	332
Psp124BI	GAGCTC	1 cut(s)	299
PsrI	GAACNNNNNNTAC	2 cut(s)	429, 461
RsaI	GTAC	2 cut(s)	110, 370
RsaNI	GTAC	2 cut(s)	109, 369
RseI	CAYNNNNRTG	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	299
SaqAI	TTAA	4 cut(s)	72, 240, 303, 356
SatI	GCNGC	1 cut(s)	331
Sau3AI	GATC	1 cut(s)	89
SduI	GDGCHC	2 cut(s)	36, 299
SfcI	CTRYAG	2 cut(s)	24, 193
SfuI	TTCGAA	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	345
Sse9I	AATT	2 cut(s)	170, 226
SsiI	CCGC	2 cut(s)	160, 166
SspMI	CTAG	1 cut(s)	363
SstI	GAGCTC	1 cut(s)	299
TaaI	ACNGT	3 cut(s)	140, 197, 308
TaiI	ACGT	2 cut(s)	374, 421
TaqI	TCGA	2 cut(s)	311, 448
TasI	AATT	2 cut(s)	170, 226
Tru1I	TTAA	4 cut(s)	72, 240, 303, 356
Tru9I	TTAA	4 cut(s)	72, 240, 303, 356
TseFI	GTSAC	1 cut(s)	261
TseI	GCWGC	1 cut(s)	330
Tsp45I	GTSAC	1 cut(s)	261
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.