Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006593

Physical Location & Seq

Genomic Coordinates Reverse (-)

26851296 .. 26852424

Gene Structure 1129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002179

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGGGATTGTCATCAGTAAAGCCATGGATGGGCTCGGCGACCTGCTTGAAAAAACATTTTTGTCTCCATTTAAGACTATGTTTGATGGATCATGCCAGGAGTGTTCAGGACCTTGGGAGTTGGTTTGTTTCATTGAGCATCTATGCGTGTCCAATCTGTTGAAACTGCTGATGATCCTGGTCCTTTGTTACATAACATTACAATTCTTCTATTTAGTATTCAAGTTGGGGATCTTCCAATGCATTGGAAAAAGCCTCTGTAAAATGTGTTGGGCTGCATGTGAGACATATTGGTTGGCACTACATGATATTTGTAGTTTCATGTGGTACAAGTTGAGGAACACTAAGAGGATAAACCGTCGTTGCCGACGCCATCTCCATCACCGCCAATTTCGAGACATTGAACAAGGCAACAGTTCAAGTGGAGATAATGAGTTGTGGGACAATTATCGTAATCCTAATGTTAGTAGAAAGCGAAAGTCACTCAGGAGGAGAAGAAAAGATAGGATGCAGCGATCTGTTAACCGGCATGGCTCTCGCAGACACCATCATTGTCATGTAAGGTTAAAGTCTAGGAGTATGTCTGCTCGCATTACGGGCAGGTCTCAAAGGCTGAAAAGCTCGAGACGTGTGAAAATAAGCAAGGTGACAAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

26.01

Weight (kDa)

10.38

Isoelectric Point (pI)

65.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78922
fragaria_vesca	FvH4_4g20570 FvH4_6g36610 FvH4_6g36610 FvH4_6g36610
malus_domestica	MD04G1024200.v1.1 MD04G1024400.v1.1
prunus_persica	Prupe.3G025100_v2.0.a1 Prupe.3G025100_v2.0.a1
pyrus_communis	pycom04g02080
rosa_chinensis	RchiOBHm_Chr2g0149081
rosa_laevigata	RLG00000002179 RLG00000020367
rosa_multiflora	Rmu_sc0002345.1_g000002 Rmu_sc0012763.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098480
rosa_rugosa	Rorug02G0409100
rosa_samantha	Rh2AG468500 Rh2BG481200 Rh2CG454700 Rh2DG490000 Rh7AG339700 Rh7CG357700 Rh7DG338400
rosa_wichuraiana	Rw2G038160 Rw7G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	51, 591
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	3 cut(s)	97, 169, 239
AcyI	GRCGYC	1 cut(s)	370
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	30
AflIII	ACRYGT	1 cut(s)	628
AgsI	TTSAA	5 cut(s)	50, 163, 223, 404, 420
AjiI	CACGTC	1 cut(s)	629
AjnI	CCWGG	2 cut(s)	96, 177
AluBI	AGCT	1 cut(s)	621
AluI	AGCT	1 cut(s)	621
Alw26I	GTCTC	5 cut(s)	69, 278, 390, 609, 619
AlwI	GGATC	3 cut(s)	97, 169, 239
Ama87I	CYCGRG	1 cut(s)	622
ApeKI	GCWGC	2 cut(s)	275, 511
AspS9I	GGNCC	2 cut(s)	110, 181
AsuHPI	GGTGA	2 cut(s)	374, 658
AvaI	CYCGRG	1 cut(s)	622
AvaII	GGWCC	2 cut(s)	110, 181
BanII	GRGCYC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	262, 523
BccI	CCATC	5 cut(s)	23, 80, 381, 387, 555
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BciT130I	CCWGG	2 cut(s)	98, 179
BcoDI	GTCTC	5 cut(s)	69, 278, 390, 609, 619
BfaI	CTAG	1 cut(s)	573
BfuAI	ACCTGC	2 cut(s)	51, 591
BisI	GCNGC	2 cut(s)	276, 512
BlsI	GCNGC	2 cut(s)	277, 513
Bme1390I	CCNGG	2 cut(s)	98, 179
Bme18I	GGWCC	2 cut(s)	110, 181
BmeT110I	CYCGRG	1 cut(s)	622
BmgBI	CACGTC	1 cut(s)	629
BmgT120I	GGNCC	2 cut(s)	110, 181
BmrFI	CCNGG	2 cut(s)	98, 179
BmsI	GCATC	2 cut(s)	148, 498
BsaBI	GATNNNNATC	1 cut(s)	11
BsaHI	GRCGYC	1 cut(s)	370
BsaI	GGTCTC	1 cut(s)	609
BsaJI	CCNNGG	2 cut(s)	24, 113
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse118I	RCCGGY	1 cut(s)	525
Bse8I	GATNNNNATC	1 cut(s)	11
BseBI	CCWGG	2 cut(s)	98, 179
BseDI	CCNNGG	2 cut(s)	24, 113
BseGI	GGATG	2 cut(s)	34, 513
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	499
BseRI	GAGGAG	1 cut(s)	505
BseXI	GCAGC	2 cut(s)	262, 523
BsiHKCI	CYCGRG	1 cut(s)	622
BsiSI	CCGG	1 cut(s)	526
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmAI	GTCTC	5 cut(s)	69, 278, 390, 609, 619
BsmBI	CGTCTC	1 cut(s)	619
BsmFI	GGGAC	1 cut(s)	455
Bso31I	GGTCTC	1 cut(s)	609
BsoBI	CYCGRG	1 cut(s)	622
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	4 cut(s)	89, 174, 231, 515
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	1 cut(s)	385
BspCNI	CTCAG	1 cut(s)	498
BspMI	ACCTGC	2 cut(s)	51, 591
BspPI	GGATC	3 cut(s)	97, 169, 239
BspTNI	GGTCTC	1 cut(s)	609
BsrFI	RCCGGY	1 cut(s)	525
BssAI	RCCGGY	1 cut(s)	525
BssECI	CCNNGG	2 cut(s)	24, 113
BssMI	GATC	4 cut(s)	89, 174, 231, 515
BssNI	GRCGYC	1 cut(s)	370
BssT1I	CCWWGG	2 cut(s)	24, 113
Bst2UI	CCWGG	2 cut(s)	98, 179
Bst4CI	ACNGT	2 cut(s)	359, 416
BstACI	GRCGYC	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	589
BstDEI	CTNAG	2 cut(s)	345, 485
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	34, 513
BstKTI	GATC	4 cut(s)	92, 177, 234, 518
BstMAI	GTCTC	5 cut(s)	69, 278, 390, 609, 619
BstMBI	GATC	4 cut(s)	89, 174, 231, 515
BstMWI	GCNNNNNNNGC	1 cut(s)	597
BstNI	CCWGG	2 cut(s)	98, 179
BstNSI	RCATGY	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	96, 177
BstV1I	GCAGC	2 cut(s)	262, 523
BstX2I	RGATCY	1 cut(s)	231
BstXI	CCANNNNNNTGG	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	24
BtrI	CACGTC	1 cut(s)	629
BtsCI	GGATG	2 cut(s)	34, 513
BveI	ACCTGC	2 cut(s)	51, 591
Cac8I	GCNNGC	1 cut(s)	589
Cfr10I	RCCGGY	1 cut(s)	525
Cfr13I	GGNCC	2 cut(s)	110, 181
CseI	GACGC	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	7 cut(s)	25, 93, 279, 305, 322, 530, 557
CviJI	RGCY	7 cut(s)	23, 34, 255, 275, 534, 613, 621
CviKI_1	RGCY	7 cut(s)	23, 34, 255, 275, 534, 613, 621
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	2 cut(s)	345, 485
DpnI	GATC	4 cut(s)	91, 176, 233, 517
DpnII	GATC	4 cut(s)	89, 174, 231, 515
Eco130I	CCWWGG	2 cut(s)	24, 113
Eco24I	GRGCYC	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	609
Eco47I	GGWCC	2 cut(s)	110, 181
Eco88I	CYCGRG	1 cut(s)	622
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	2 cut(s)	96, 177
EcoT14I	CCWWGG	2 cut(s)	24, 113
EcoT22I	ATGCAT	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	36
ErhI	CCWWGG	2 cut(s)	24, 113
Esp3I	CGTCTC	1 cut(s)	619
FaeI	CATG	7 cut(s)	28, 96, 282, 308, 325, 533, 560
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	7 cut(s)	24, 92, 278, 304, 321, 529, 556
Fnu4HI	GCNGC	2 cut(s)	276, 512
FokI	GGATG	2 cut(s)	41, 520
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	2 cut(s)	276, 512
FspBI	CTAG	1 cut(s)	573
GluI	GCNGC	2 cut(s)	276, 512
HapII	CCGG	1 cut(s)	526
HgaI	GACGC	1 cut(s)	378
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	7 cut(s)	28, 96, 282, 308, 325, 533, 560
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HpaI	GTTAAC	1 cut(s)	523
HpaII	CCGG	1 cut(s)	526
HphI	GGTGA	2 cut(s)	374, 658
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188III	TCNNGA	4 cut(s)	108, 395, 487, 624
Hpy8I	GTNNAC	1 cut(s)	523
Hpy99I	CGWCG	2 cut(s)	363, 372
HpyCH4III	ACNGT	2 cut(s)	359, 416
HpyCH4IV	ACGT	1 cut(s)	628
HpyCH4V	TGCA	3 cut(s)	243, 278, 511
HpyF10VI	GCNNNNNNNGC	1 cut(s)	597
HpyF3I	CTNAG	2 cut(s)	345, 485
HpySE526I	ACGT	1 cut(s)	628
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	7 cut(s)	28, 96, 282, 308, 325, 533, 560
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	4 cut(s)	89, 174, 231, 515
LpnPI	CCDG	9 cut(s)	56, 83, 93, 110, 164, 191, 472, 539, 586
Lsp1109I	GCAGC	2 cut(s)	262, 523
LweI	GCATC	2 cut(s)	148, 498
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	3 cut(s)	188, 480, 646
MalI	GATC	4 cut(s)	91, 176, 233, 517
MboI	GATC	4 cut(s)	89, 174, 231, 515
MboII	GAAGA	3 cut(s)	199, 226, 507
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	3 cut(s)	203, 389, 445
MnlI	CCTC	4 cut(s)	266, 330, 342, 483
Mph1103I	ATGCAT	1 cut(s)	245
MseI	TTAA	3 cut(s)	72, 522, 566
MslI	CAYNNNNRTG	1 cut(s)	555
MspI	CCGG	1 cut(s)	526
MspR9I	CCNGG	2 cut(s)	98, 179
MvaI	CCWGG	2 cut(s)	98, 179
MwoI	GCNNNNNNNGC	1 cut(s)	597
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	4 cut(s)	89, 174, 231, 515
NlaIII	CATG	7 cut(s)	28, 96, 282, 308, 325, 533, 560
NmeAIII	GCCGAG	1 cut(s)	15
NmuCI	GTSAC	2 cut(s)	480, 646
NsiI	ATGCAT	1 cut(s)	245
NspI	RCATGY	1 cut(s)	282
PaeR7I	CTCGAG	1 cut(s)	622
PkrI	GCNGC	2 cut(s)	277, 513
PpuMI	RGGWCCY	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	96, 177
PspGI	CCWGG	2 cut(s)	96, 177
PspPI	GGNCC	2 cut(s)	110, 181
PspPPI	RGGWCCY	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	231
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	555
SaqAI	TTAA	3 cut(s)	72, 522, 566
SatI	GCNGC	2 cut(s)	276, 512
Sau3AI	GATC	4 cut(s)	89, 174, 231, 515
Sau96I	GGNCC	2 cut(s)	110, 181
ScrFI	CCNGG	2 cut(s)	98, 179
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	7 cut(s)	45, 115, 566, 605, 623, 631, 648
SfaNI	GCATC	2 cut(s)	148, 498
Sfr274I	CTCGAG	1 cut(s)	622
SinI	GGWCC	2 cut(s)	110, 181
SlaI	CTCGAG	1 cut(s)	622
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	1 cut(s)	622
SmoI	CTYRAG	1 cut(s)	622
Sse9I	AATT	3 cut(s)	203, 389, 445
SsiI	CCGC	1 cut(s)	385
SspI	AATATT	1 cut(s)	655
SspMI	CTAG	1 cut(s)	573
StyD4I	CCNGG	2 cut(s)	96, 177
StyI	CCWWGG	2 cut(s)	24, 113
TaaI	ACNGT	2 cut(s)	359, 416
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	2 cut(s)	394, 623
TasI	AATT	3 cut(s)	203, 389, 445
Tru1I	TTAA	3 cut(s)	72, 522, 566
Tru9I	TTAA	3 cut(s)	72, 522, 566
TseFI	GTSAC	2 cut(s)	480, 646
TseI	GCWGC	2 cut(s)	275, 511
Tsp45I	GTSAC	2 cut(s)	480, 646
TspDTI	ATGAA	2 cut(s)	121, 310
VpaK11BI	GGWCC	2 cut(s)	110, 181
XceI	RCATGY	1 cut(s)	282
XhoI	CTCGAG	1 cut(s)	622
XspI	CTAG	1 cut(s)	573
Zsp2I	ATGCAT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.