Rmu_sc0002345.1_g000002

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002345.1
OG0006593
Physical Location & Seq
Forward (+)
4239 .. 4682
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002345.1_g000002.1.cds

Sequence Viewer

Length: 444 bp
atgtgctgggctgcatgtgagacatattggtttgcgctacatgatatttgtagtttcttgtggtacaagttgaggaacactaagagggtaaaccgtcgtcgccgacgccatctccgccaccgccaatttcgagacattgaacaaggctacagttcaagtggggataatgagttgtgggacaattatcgtaatcttaatgttagtagaaagcgaaagtcactcagcaggagaagagaagatagggtgcagagctctgttaaccgttcgagtaggcatggcactcgcagccaccatcatcgtcatgtaaggttaaagtctaggagtatgtctgttcgcgttacgggcaggtcacaaagactaaaaagctcgagacgtgtgaaaataagcaaggtaacaaatgttcgaaggaaaaccagaacttctaagaggaggaggcttaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

18.14

Weight (kDa)

12.0

Isoelectric Point (pI)

101.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 336
AccII CGCG 1 cut(s) 336
AciI CCGC 2 cut(s) 115, 121
AcyI GRCGYC 1 cut(s) 106
AfaI GTAC 1 cut(s) 65
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 2 cut(s) 140, 156
AjiI CACGTC 1 cut(s) 374
AluBI AGCT 2 cut(s) 252, 366
AluI AGCT 2 cut(s) 252, 366
Alw21I GWGCWC 1 cut(s) 254
Alw26I GTCTC 3 cut(s) 14, 126, 364
Ama87I CYCGRG 1 cut(s) 367
ApeKI GCWGC 2 cut(s) 11, 285
AspLEI GCGC 1 cut(s) 37
AsuII TTCGAA 1 cut(s) 403
AvaI CYCGRG 1 cut(s) 367
BanII GRGCYC 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 254
BbvI GCAGC 1 cut(s) 297
BccI CCATC 2 cut(s) 117, 300
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BcoDI GTCTC 3 cut(s) 14, 126, 364
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 148
BfuAI ACCTGC 1 cut(s) 336
BisI GCNGC 2 cut(s) 12, 286
BlsI GCNGC 2 cut(s) 13, 287
BmeT110I CYCGRG 1 cut(s) 367
BmgBI CACGTC 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 437
Bpu14I TTCGAA 1 cut(s) 403
BsaHI GRCGYC 1 cut(s) 106
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
BseMII CTCAG 1 cut(s) 235
BseRI GAGGAG 1 cut(s) 442
BseXI GCAGC 1 cut(s) 297
BseYI CCCAGC 1 cut(s) 6
BsgI GTGCAG 1 cut(s) 266
Bsh1236I CGCG 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 367
BslFI GGGAC 1 cut(s) 191
BsmAI GTCTC 3 cut(s) 14, 126, 364
BsmBI CGTCTC 1 cut(s) 364
BsmFI GGGAC 1 cut(s) 191
BsoBI CYCGRG 1 cut(s) 367
Bsp119I TTCGAA 1 cut(s) 403
Bsp1286I GDGCHC 1 cut(s) 254
BspACI CCGC 2 cut(s) 115, 121
BspCNI CTCAG 1 cut(s) 234
BspFNI CGCG 1 cut(s) 336
BspMI ACCTGC 1 cut(s) 336
BspT104I TTCGAA 1 cut(s) 403
BssNI GRCGYC 1 cut(s) 106
Bst4CI ACNGT 3 cut(s) 95, 152, 263
Bst6I CTCTTC 1 cut(s) 226
BstACI GRCGYC 1 cut(s) 106
BstBI TTCGAA 1 cut(s) 403
BstDEI CTNAG 4 cut(s) 81, 221, 423, 437
BstFNI CGCG 1 cut(s) 336
BstHHI GCGC 1 cut(s) 37
BstMAI GTCTC 3 cut(s) 14, 126, 364
BstMWI GCNNNNNNNGC 3 cut(s) 114, 285, 342
BstNSI RCATGY 1 cut(s) 18
BstSFI CTRYAG 1 cut(s) 148
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 1 cut(s) 297
BtrI CACGTC 1 cut(s) 374
BveI ACCTGC 1 cut(s) 336
CfoI GCGC 1 cut(s) 37
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 64
CviAII CATG 4 cut(s) 15, 41, 275, 302
CviJI RGCY 6 cut(s) 11, 147, 252, 288, 366, 436
CviKI_1 RGCY 6 cut(s) 11, 147, 252, 288, 366, 436
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 4 cut(s) 81, 221, 423, 437
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
EciI GGCGGA 1 cut(s) 104
Ecl136II GAGCTC 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 367
EcoICRI GAGCTC 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 254
Esp3I CGTCTC 1 cut(s) 364
FaeI CATG 4 cut(s) 18, 44, 278, 305
FaiI YATR 6 cut(s) 16, 25, 42, 276, 303, 326
FaqI GGGAC 1 cut(s) 191
FatI CATG 4 cut(s) 14, 40, 274, 301
Fnu4HI GCNGC 2 cut(s) 12, 286
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 2 cut(s) 12, 286
FspBI CTAG 1 cut(s) 318
GlaI GCGC 1 cut(s) 36
GluI GCNGC 2 cut(s) 12, 286
GsaI CCCAGC 1 cut(s) 10
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 106
Hin1II CATG 4 cut(s) 18, 44, 278, 305
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HpaI GTTAAC 1 cut(s) 259
Hpy166II GTNNAC 2 cut(s) 91, 259
Hpy188III TCNNGA 2 cut(s) 131, 369
Hpy8I GTNNAC 2 cut(s) 91, 259
Hpy99I CGWCG 3 cut(s) 99, 102, 108
HpyAV CCTTC 1 cut(s) 399
HpyCH4III ACNGT 3 cut(s) 95, 152, 263
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 2 cut(s) 14, 247
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 285, 342
HpyF3I CTNAG 4 cut(s) 81, 221, 423, 437
HpySE526I ACGT 1 cut(s) 373
Hsp92I GRCGYC 1 cut(s) 106
Hsp92II CATG 4 cut(s) 18, 44, 278, 305
HspAI GCGC 1 cut(s) 35
KspAI GTTAAC 1 cut(s) 259
LpnPI CCDG 3 cut(s) 211, 331, 427
Lsp1109I GCAGC 1 cut(s) 297
MaeI CTAG 1 cut(s) 318
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 4 cut(s) 216, 337, 348, 391
MboII GAAGA 2 cut(s) 243, 248
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 2 cut(s) 125, 181
MnlI CCTC 5 cut(s) 66, 78, 420, 423, 426
MseI TTAA 3 cut(s) 195, 258, 311
MslI CAYNNNNRTG 1 cut(s) 300
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 3 cut(s) 114, 285, 342
NlaIII CATG 4 cut(s) 18, 44, 278, 305
NmuCI GTSAC 2 cut(s) 216, 348
NspI RCATGY 1 cut(s) 18
NspV TTCGAA 1 cut(s) 403
PaeR7I CTCGAG 1 cut(s) 367
PkrI GCNGC 2 cut(s) 13, 287
Psp124BI GAGCTC 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 6
PsrI GAACNNNNNNTAC 2 cut(s) 384, 416
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 1 cut(s) 300
SacI GAGCTC 1 cut(s) 254
SaqAI TTAA 3 cut(s) 195, 258, 311
SatI GCNGC 2 cut(s) 12, 286
SduI GDGCHC 1 cut(s) 254
SetI ASST 7 cut(s) 254, 311, 350, 368, 376, 393, 443
SfcI CTRYAG 1 cut(s) 148
Sfr274I CTCGAG 1 cut(s) 367
SfuI TTCGAA 1 cut(s) 403
SlaI CTCGAG 1 cut(s) 367
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
Sse9I AATT 2 cut(s) 125, 181
SsiI CCGC 2 cut(s) 115, 121
SspMI CTAG 1 cut(s) 318
SstI GAGCTC 1 cut(s) 254
TaaI ACNGT 3 cut(s) 95, 152, 263
TaiI ACGT 1 cut(s) 376
TaqI TCGA 4 cut(s) 130, 266, 368, 403
TasI AATT 2 cut(s) 125, 181
Tru1I TTAA 3 cut(s) 195, 258, 311
Tru9I TTAA 3 cut(s) 195, 258, 311
TseFI GTSAC 2 cut(s) 216, 348
TseI GCWGC 2 cut(s) 11, 285
Tsp45I GTSAC 2 cut(s) 216, 348
XceI RCATGY 1 cut(s) 18
XhoI CTCGAG 1 cut(s) 367
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.