Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006593

Physical Location & Seq

Genomic Coordinates Forward (+)

1861516 .. 1862977

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g02080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGGGATGTCGTTAGTAAAGCTGCAAATGGGGTCGGCGATCTACTTGAGAAAGCATTTTTGGCTCCATTTAAGACTATGTTCAATACCTCGTGCGAGGATGTTTGTTCAGGACCCTGGGATTTGATTTGTTTCATTGAGCATCTTTGTGTCTCCAATCTATTGAGACTGTTAATGATATCGATCCTCTGCTACATAACTTTGTTGTTCTTTTATCTAGTATTCAAGCTGGGAATCTTCCAATGCGTTGGAAAGAGCCTATGTAAAATGTGTTGGGCTGCATGTGAGACGTATTGGTTTGCATTGGAAGATATTACTTGTTTCTTGTGGTACAAGCTAAGGAACACTAGGAGGATAGACCGACGTCGTCACCGCCATCGACGCCGCCGCCAATTTCGAGACATAGAACAAGGCTTCAGTTCGAGTGAAGAAAATGACTTGTGGGATAACCATCATAACTTAAACGTCAGTAGAAAGCGGAAGTCAGTCAGCAGGAGAAGAAAGGACAGGCTGCAGAGCTCGATTTACCCTTCAAGTAGGCATGATACTCGCAGCCATCGCCATGTAAGGTTAAAGTCTAGGGGAAGGTCTGTTCGTGTTGTGGGCAGGTCTCGAACGGTGAGAAGTTCTAGACGTCTTCAATTAAGCAAGGTGAGAACTGTTGGAAGGCAAGCCAGAACTTTGAAGAGGAGGAGAATTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

27.87

Weight (kDa)

11.11

Isoelectric Point (pI)

79.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78922
fragaria_vesca	FvH4_4g20570 FvH4_6g36610 FvH4_6g36610 FvH4_6g36610
malus_domestica	MD04G1024200.v1.1 MD04G1024400.v1.1
prunus_persica	Prupe.3G025100_v2.0.a1 Prupe.3G025100_v2.0.a1
pyrus_communis	pycom04g02080
rosa_chinensis	RchiOBHm_Chr2g0149081
rosa_laevigata	RLG00000002179 RLG00000020367
rosa_multiflora	Rmu_sc0002345.1_g000002 Rmu_sc0012763.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098480
rosa_rugosa	Rorug02G0409100
rosa_samantha	Rh2AG468500 Rh2BG481200 Rh2CG454700 Rh2DG490000 Rh7AG339700 Rh7CG357700 Rh7DG338400
rosa_wichuraiana	Rw2G038160 Rw7G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	367, 637
Acc36I	ACCTGC	1 cut(s)	597
AciI	CCGC	4 cut(s)	373, 385, 388, 478
AclWI	GGATC	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	400
AcyI	GRCGYC	3 cut(s)	364, 382, 634
AfaI	GTAC	1 cut(s)	332
AgsI	TTSAA	5 cut(s)	85, 226, 534, 641, 685
AjnI	CCWGG	1 cut(s)	116
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AloI	GAACNNNNNNTCC	2 cut(s)	576, 608
AluBI	AGCT	4 cut(s)	23, 229, 337, 519
AluI	AGCT	4 cut(s)	23, 229, 337, 519
Alw21I	GWGCWC	1 cut(s)	521
Alw26I	GTCTC	5 cut(s)	157, 160, 281, 393, 615
AlwI	GGATC	1 cut(s)	178
ApeKI	GCWGC	4 cut(s)	23, 278, 511, 552
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	3 cut(s)	362, 631, 664
AvaII	GGWCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	521
BauI	CACGAG	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	629
Bbv12I	GWGCWC	1 cut(s)	521
BbvI	GCAGC	4 cut(s)	10, 265, 498, 564
BccI	CCATC	3 cut(s)	384, 459, 564
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciT130I	CCWGG	1 cut(s)	118
BcoDI	GTCTC	5 cut(s)	157, 160, 281, 393, 615
BfaI	CTAG	4 cut(s)	218, 348, 579, 630
BfmI	CTRYAG	1 cut(s)	512
BfuAI	ACCTGC	1 cut(s)	597
BisI	GCNGC	6 cut(s)	24, 279, 385, 388, 512, 553
BlsI	GCNGC	6 cut(s)	25, 280, 386, 389, 513, 554
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	66, 115
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	1 cut(s)	151
BoxI	GACNNNNGTC	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	629
Bpu10I	CCTNAGC	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	68
Bsa29I	ATCGAT	1 cut(s)	182
BsaBI	GATNNNNATC	2 cut(s)	182, 450
BsaHI	GRCGYC	3 cut(s)	364, 382, 634
BsaI	GGTCTC	1 cut(s)	615
BsaJI	CCNNGG	2 cut(s)	116, 117
Bse8I	GATNNNNATC	2 cut(s)	182, 450
BseBI	CCWGG	1 cut(s)	118
BseCI	ATCGAT	1 cut(s)	182
BseDI	CCNNGG	2 cut(s)	116, 117
BseGI	GGATG	2 cut(s)	13, 106
BseJI	GATNNNNATC	2 cut(s)	182, 450
BseRI	GAGGAG	1 cut(s)	703
BseXI	GCAGC	4 cut(s)	10, 265, 498, 564
BseYI	CCCAGC	1 cut(s)	229
BshVI	ATCGAT	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	521
BsmAI	GTCTC	5 cut(s)	157, 160, 281, 393, 615
BsmBI	CGTCTC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	615
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp143I	GATC	2 cut(s)	40, 183
BspACI	CCGC	4 cut(s)	373, 385, 388, 478
BspDI	ATCGAT	1 cut(s)	182
BspLI	GGNNCC	2 cut(s)	66, 115
BspMAI	CTGCAG	1 cut(s)	516
BspMI	ACCTGC	1 cut(s)	597
BspPI	GGATC	1 cut(s)	178
BspTNI	GGTCTC	1 cut(s)	615
BssECI	CCNNGG	2 cut(s)	116, 117
BssMI	GATC	2 cut(s)	40, 183
BssNI	GRCGYC	3 cut(s)	364, 382, 634
BssSI	CACGAG	1 cut(s)	91
Bst2BI	CACGAG	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	3 cut(s)	171, 619, 661
Bst6I	CTCTTC	1 cut(s)	680
BstACI	GRCGYC	3 cut(s)	364, 382, 634
BstC8I	GCNNGC	1 cut(s)	672
BstDEI	CTNAG	1 cut(s)	338
BstF5I	GGATG	2 cut(s)	13, 106
BstKTI	GATC	2 cut(s)	43, 186
BstMAI	GTCTC	5 cut(s)	157, 160, 281, 393, 615
BstMBI	GATC	2 cut(s)	40, 183
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 381, 558
BstNI	CCWGG	1 cut(s)	118
BstNSI	RCATGY	1 cut(s)	285
BstPAI	GACNNNNGTC	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	512
BstV1I	GCAGC	4 cut(s)	10, 265, 498, 564
BstV2I	GAAGAC	1 cut(s)	629
BstXI	CCANNNNNNTGG	1 cut(s)	248
Bsu15I	ATCGAT	1 cut(s)	182
BsuTUI	ATCGAT	1 cut(s)	182
BtgZI	GCGATG	1 cut(s)	542
BtsCI	GGATG	2 cut(s)	13, 106
BveI	ACCTGC	1 cut(s)	597
Cac8I	GCNNGC	1 cut(s)	672
Cfr13I	GGNCC	1 cut(s)	113
ClaI	ATCGAT	1 cut(s)	182
CseI	GACGC	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	3 cut(s)	282, 542, 563
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	2 cut(s)	42, 185
DpnII	GATC	2 cut(s)	40, 183
Eam1104I	CTCTTC	1 cut(s)	680
EarI	CTCTTC	1 cut(s)	680
Ecl136II	GAGCTC	1 cut(s)	519
Eco24I	GRGCYC	1 cut(s)	521
Eco31I	GGTCTC	1 cut(s)	615
Eco32I	GATATC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	519
Eco57I	CTGAAG	1 cut(s)	400
EcoICRI	GAGCTC	1 cut(s)	519
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	116
EcoRV	GATATC	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	521
Esp3I	CGTCTC	1 cut(s)	281
FaeI	CATG	3 cut(s)	285, 545, 566
FaiI	YATR	8 cut(s)	80, 197, 262, 283, 404, 456, 543, 564
FatI	CATG	3 cut(s)	281, 541, 562
Fnu4HI	GCNGC	6 cut(s)	24, 279, 385, 388, 512, 553
FokI	GGATG	2 cut(s)	20, 113
FriOI	GRGCYC	1 cut(s)	521
Fsp4HI	GCNGC	6 cut(s)	24, 279, 385, 388, 512, 553
FspBI	CTAG	4 cut(s)	218, 348, 579, 630
GluI	GCNGC	6 cut(s)	24, 279, 385, 388, 512, 553
GsaI	CCCAGC	1 cut(s)	233
HgaI	GACGC	1 cut(s)	390
Hin1I	GRCGYC	3 cut(s)	364, 382, 634
Hin1II	CATG	3 cut(s)	285, 545, 566
HinfI	GANTC	1 cut(s)	234
HphI	GGTGA	3 cut(s)	362, 631, 664
Hpy188III	TCNNGA	4 cut(s)	111, 398, 612, 630
Hpy99I	CGWCG	3 cut(s)	366, 369, 384
HpyAV	CCTTC	3 cut(s)	540, 579, 660
HpyCH4III	ACNGT	3 cut(s)	171, 619, 661
HpyCH4IV	ACGT	4 cut(s)	290, 364, 465, 634
HpyCH4V	TGCA	4 cut(s)	26, 281, 302, 514
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 381, 558
HpyF3I	CTNAG	1 cut(s)	338
HpySE526I	ACGT	4 cut(s)	290, 364, 465, 634
Hsp92I	GRCGYC	3 cut(s)	364, 382, 634
Hsp92II	CATG	3 cut(s)	285, 545, 566
Kzo9I	GATC	2 cut(s)	40, 183
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	8 cut(s)	96, 103, 130, 215, 478, 493, 592, 688
Lsp1109I	GCAGC	4 cut(s)	10, 265, 498, 564
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	4 cut(s)	218, 348, 579, 630
MaeII	ACGT	4 cut(s)	290, 364, 465, 634
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	2 cut(s)	42, 185
MboI	GATC	2 cut(s)	40, 183
MboII	GAAGA	6 cut(s)	229, 320, 440, 510, 629, 697
MhlI	GDGCHC	1 cut(s)	521
MluCI	AATT	3 cut(s)	392, 641, 696
MmeI	TCCRAC	2 cut(s)	229, 643
MnlI	CCTC	6 cut(s)	91, 100, 197, 345, 681, 684
MseI	TTAA	5 cut(s)	72, 173, 461, 572, 644
MslI	CAYNNNNRTG	2 cut(s)	147, 561
MspR9I	CCNGG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	3 cut(s)	62, 381, 558
NdeII	GATC	2 cut(s)	40, 183
NlaIII	CATG	3 cut(s)	285, 545, 566
NlaIV	GGNNCC	2 cut(s)	66, 115
NmuCI	GTSAC	1 cut(s)	368
NspI	RCATGY	1 cut(s)	285
PasI	CCCWGGG	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	234
PflFI	GACNNNGTC	1 cut(s)	366
PkrI	GCNGC	6 cut(s)	25, 280, 386, 389, 513, 554
PpuMI	RGGWCCY	1 cut(s)	113
PshAI	GACNNNNGTC	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	521
Psp5II	RGGWCCY	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	116
PspFI	CCCAGC	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	2 cut(s)	66, 115
PspPI	GGNCC	1 cut(s)	113
PspPPI	RGGWCCY	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	516
PsyI	GACNNNGTC	1 cut(s)	366
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	2 cut(s)	147, 561
SacI	GAGCTC	1 cut(s)	521
SaqAI	TTAA	5 cut(s)	72, 173, 461, 572, 644
SatI	GCNGC	6 cut(s)	24, 279, 385, 388, 512, 553
Sau3AI	GATC	2 cut(s)	40, 183
Sau96I	GGNCC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	521
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	1 cut(s)	512
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	2 cut(s)	147, 561
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	3 cut(s)	392, 641, 696
SsiI	CCGC	4 cut(s)	373, 385, 388, 478
SspMI	CTAG	4 cut(s)	218, 348, 579, 630
SstI	GAGCTC	1 cut(s)	521
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	3 cut(s)	171, 619, 661
TaiI	ACGT	4 cut(s)	293, 367, 468, 637
TaqI	TCGA	6 cut(s)	182, 379, 397, 422, 521, 613
TaqII	GACCGA	1 cut(s)	375
TasI	AATT	3 cut(s)	392, 641, 696
TauI	GCSGC	2 cut(s)	387, 390
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	5 cut(s)	72, 173, 461, 572, 644
Tru9I	TTAA	5 cut(s)	72, 173, 461, 572, 644
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	4 cut(s)	23, 278, 511, 552
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	1 cut(s)	124
Tth111I	GACNNNGTC	1 cut(s)	366
VpaK11BI	GGWCC	1 cut(s)	113
XbaI	TCTAGA	1 cut(s)	629
XceI	RCATGY	1 cut(s)	285
XspI	CTAG	4 cut(s)	218, 348, 579, 630
ZraI	GACGTC	2 cut(s)	365, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.