Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012763.1

Orthogroup ID

OG0006593

Physical Location & Seq

Genomic Coordinates Reverse (-)

27901 .. 28299

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012763.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgtgctgggctgcatgtgagacgtattggttggcactacatgatatttgtagtttcacgtggtacaagttgaggaacactaagaggataaaccgtcgtcgccgacgccatctccatcaccgccaatttcgagacattgaacaagactacagttcaagtggagataatgagttgtgggacaattatcgtaatcttaatgttagtagaaagcgaaagtcactcagcaggagaagaaaagatagggtgcagcgatctgttaaccgtaggcatggcactctcagccaccatcattgtcatgtaaggttaaagtctaggagtatgtctgttcgcattacgggcaggtctcaaaggctaaaaagctcgagacgtgtgaaaataagcaaggtgacaaatgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

16.21

Weight (kDa)

11.67

Isoelectric Point (pI)

85.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78922
fragaria_vesca	FvH4_4g20570 FvH4_6g36610 FvH4_6g36610 FvH4_6g36610
malus_domestica	MD04G1024200.v1.1 MD04G1024400.v1.1
prunus_persica	Prupe.3G025100_v2.0.a1 Prupe.3G025100_v2.0.a1
pyrus_communis	pycom04g02080
rosa_chinensis	RchiOBHm_Chr2g0149081
rosa_laevigata	RLG00000002179 RLG00000020367
rosa_multiflora	Rmu_sc0002345.1_g000002 Rmu_sc0012763.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098480
rosa_rugosa	Rorug02G0409100
rosa_samantha	Rh2AG468500 Rh2BG481200 Rh2CG454700 Rh2DG490000 Rh7AG339700 Rh7CG357700 Rh7DG338400
rosa_wichuraiana	Rw2G038160 Rw7G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	330
AciI	CCGC	1 cut(s)	121
AcvI	CACGTG	1 cut(s)	60
AcyI	GRCGYC	1 cut(s)	106
AfaI	GTAC	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	140, 156
AjiI	CACGTC	1 cut(s)	368
AluBI	AGCT	1 cut(s)	360
AluI	AGCT	1 cut(s)	360
Alw26I	GTCTC	4 cut(s)	14, 126, 348, 358
Ama87I	CYCGRG	1 cut(s)	361
ApeKI	GCWGC	2 cut(s)	11, 247
AsuHPI	GGTGA	2 cut(s)	110, 397
AvaI	CYCGRG	1 cut(s)	361
BbrPI	CACGTG	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	3 cut(s)	117, 123, 294
BcoDI	GTCTC	4 cut(s)	14, 126, 348, 358
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	148
BfuAI	ACCTGC	1 cut(s)	330
BisI	GCNGC	2 cut(s)	12, 248
BlsI	GCNGC	2 cut(s)	13, 249
BmeT110I	CYCGRG	1 cut(s)	361
BmgBI	CACGTC	1 cut(s)	368
BsaAI	YACGTR	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	348
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
BseMII	CTCAG	2 cut(s)	235, 292
BseXI	GCAGC	1 cut(s)	259
BseYI	CCCAGC	1 cut(s)	6
BsgI	GTGCAG	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	361
BslFI	GGGAC	1 cut(s)	191
BsmAI	GTCTC	4 cut(s)	14, 126, 348, 358
BsmBI	CGTCTC	2 cut(s)	14, 358
BsmFI	GGGAC	1 cut(s)	191
Bso31I	GGTCTC	1 cut(s)	348
BsoBI	CYCGRG	1 cut(s)	361
Bsp143I	GATC	1 cut(s)	251
BspACI	CCGC	1 cut(s)	121
BspCNI	CTCAG	2 cut(s)	234, 291
BspMI	ACCTGC	1 cut(s)	330
BspTNI	GGTCTC	1 cut(s)	348
BssMI	GATC	1 cut(s)	251
BssNI	GRCGYC	1 cut(s)	106
Bst4CI	ACNGT	3 cut(s)	95, 152, 263
BstACI	GRCGYC	1 cut(s)	106
BstBAI	YACGTR	1 cut(s)	60
BstDEI	CTNAG	3 cut(s)	81, 221, 278
BstKTI	GATC	1 cut(s)	254
BstMAI	GTCTC	4 cut(s)	14, 126, 348, 358
BstMBI	GATC	1 cut(s)	251
BstMWI	GCNNNNNNNGC	2 cut(s)	279, 336
BstNSI	RCATGY	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	148
BstV1I	GCAGC	1 cut(s)	259
BtrI	CACGTC	1 cut(s)	368
BveI	ACCTGC	1 cut(s)	330
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	64
CspCI	CAANNNNNGTGG	2 cut(s)	272, 307
CviAII	CATG	4 cut(s)	15, 41, 269, 296
CviJI	RGCY	4 cut(s)	11, 282, 352, 360
CviKI_1	RGCY	4 cut(s)	11, 282, 352, 360
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	3 cut(s)	81, 221, 278
DpnI	GATC	1 cut(s)	253
DpnII	GATC	1 cut(s)	251
Eco31I	GGTCTC	1 cut(s)	348
Eco72I	CACGTG	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	361
Esp3I	CGTCTC	2 cut(s)	14, 358
FaeI	CATG	4 cut(s)	18, 44, 272, 299
FaiI	YATR	5 cut(s)	16, 42, 270, 297, 320
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	4 cut(s)	14, 40, 268, 295
Fnu4HI	GCNGC	2 cut(s)	12, 248
Fsp4HI	GCNGC	2 cut(s)	12, 248
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	2 cut(s)	12, 248
GsaI	CCCAGC	1 cut(s)	10
HgaI	GACGC	1 cut(s)	114
Hin1I	GRCGYC	1 cut(s)	106
Hin1II	CATG	4 cut(s)	18, 44, 272, 299
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HpaI	GTTAAC	1 cut(s)	259
HphI	GGTGA	2 cut(s)	110, 397
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188III	TCNNGA	2 cut(s)	131, 363
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	3 cut(s)	99, 102, 108
HpyCH4III	ACNGT	3 cut(s)	95, 152, 263
HpyCH4IV	ACGT	3 cut(s)	23, 59, 367
HpyCH4V	TGCA	2 cut(s)	14, 247
HpyF10VI	GCNNNNNNNGC	2 cut(s)	279, 336
HpyF3I	CTNAG	3 cut(s)	81, 221, 278
HpySE526I	ACGT	3 cut(s)	23, 59, 367
Hsp92I	GRCGYC	1 cut(s)	106
Hsp92II	CATG	4 cut(s)	18, 44, 272, 299
KspAI	GTTAAC	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	251
LpnPI	CCDG	2 cut(s)	211, 325
Lsp1109I	GCAGC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	3 cut(s)	23, 59, 367
MaeIII	GTNAC	2 cut(s)	216, 385
MalI	GATC	1 cut(s)	253
MboI	GATC	1 cut(s)	251
MboII	GAAGA	1 cut(s)	243
MluCI	AATT	2 cut(s)	125, 181
MnlI	CCTC	2 cut(s)	66, 78
MseI	TTAA	3 cut(s)	195, 258, 305
MslI	CAYNNNNRTG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	279, 336
NdeII	GATC	1 cut(s)	251
NlaIII	CATG	4 cut(s)	18, 44, 272, 299
NmuCI	GTSAC	2 cut(s)	216, 385
NspI	RCATGY	1 cut(s)	18
PaeR7I	CTCGAG	1 cut(s)	361
PkrI	GCNGC	2 cut(s)	13, 249
PmaCI	CACGTG	1 cut(s)	60
PmlI	CACGTG	1 cut(s)	60
Ppu21I	YACGTR	1 cut(s)	60
PspCI	CACGTG	1 cut(s)	60
PspFI	CCCAGC	1 cut(s)	6
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	3 cut(s)	195, 258, 305
SatI	GCNGC	2 cut(s)	12, 248
Sau3AI	GATC	1 cut(s)	251
SetI	ASST	7 cut(s)	26, 62, 305, 344, 362, 370, 387
SfcI	CTRYAG	1 cut(s)	148
Sfr274I	CTCGAG	1 cut(s)	361
SlaI	CTCGAG	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	361
SmoI	CTYRAG	1 cut(s)	361
Sse9I	AATT	2 cut(s)	125, 181
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	1 cut(s)	312
TaaI	ACNGT	3 cut(s)	95, 152, 263
TaiI	ACGT	3 cut(s)	26, 62, 370
TaqI	TCGA	2 cut(s)	130, 362
TasI	AATT	2 cut(s)	125, 181
Tru1I	TTAA	3 cut(s)	195, 258, 305
Tru9I	TTAA	3 cut(s)	195, 258, 305
TseFI	GTSAC	2 cut(s)	216, 385
TseI	GCWGC	2 cut(s)	11, 247
Tsp45I	GTSAC	2 cut(s)	216, 385
XceI	RCATGY	1 cut(s)	18
XhoI	CTCGAG	1 cut(s)	361
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.