Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006593

Physical Location & Seq

Genomic Coordinates Forward (+)

2802967 .. 2804664

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1024400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTGTTGGGCTGCATGTGAGACGTATTGGTTTGCATTGGACGATATTACTAGTTTCTTGTGGTACAAGCTAAGGAACACTAGGAGGGTAGACCGACGCCGCCGCCGCCAATTTCAAGACATAAAACAAGACTTCAGTTCGAGTAAAGAAAATGACATGTGGGATAACTATCATAACTTAAACGTCAGTAGAAAGCGGAAGTCAGTCAACAGGAGAAGAAAGGATAGGCTGCAGAGCTCTGTTTACCCTTCAAGTAGGCATGTTACTCGCAGCCATCGCCATGTCAGGTTAAAGTCCCGGGGAAGGTTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

12.98

Weight (kDa)

11.33

Isoelectric Point (pI)

93.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78922
fragaria_vesca	FvH4_4g20570 FvH4_6g36610 FvH4_6g36610 FvH4_6g36610
malus_domestica	MD04G1024200.v1.1 MD04G1024400.v1.1
prunus_persica	Prupe.3G025100_v2.0.a1 Prupe.3G025100_v2.0.a1
pyrus_communis	pycom04g02080
rosa_chinensis	RchiOBHm_Chr2g0149081
rosa_laevigata	RLG00000002179 RLG00000020367
rosa_multiflora	Rmu_sc0002345.1_g000002 Rmu_sc0012763.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098480
rosa_rugosa	Rorug02G0409100
rosa_samantha	Rh2AG468500 Rh2BG481200 Rh2CG454700 Rh2DG490000 Rh7AG339700 Rh7CG357700 Rh7DG338400
rosa_wichuraiana	Rw2G038160 Rw7G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	4 cut(s)	100, 103, 106, 196
AcuI	CTGAAG	1 cut(s)	118
AcyI	GRCGYC	1 cut(s)	97
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	303
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	2 cut(s)	116, 252
AhlI	ACTAGT	1 cut(s)	50
AluBI	AGCT	2 cut(s)	70, 237
AluI	AGCT	2 cut(s)	70, 237
Alw21I	GWGCWC	1 cut(s)	239
Alw26I	GTCTC	1 cut(s)	14
Ama87I	CYCGRG	1 cut(s)	297
ApeKI	GCWGC	3 cut(s)	11, 229, 270
AsuC2I	CCSGG	2 cut(s)	298, 299
AvaI	CYCGRG	1 cut(s)	297
BanII	GRGCYC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	216, 282
BccI	CCATC	1 cut(s)	282
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BcnI	CCSGG	2 cut(s)	298, 299
BcoDI	GTCTC	1 cut(s)	14
BcuI	ACTAGT	1 cut(s)	50
BfaI	CTAG	2 cut(s)	51, 81
BfmI	CTRYAG	1 cut(s)	230
BisI	GCNGC	6 cut(s)	12, 100, 103, 106, 230, 271
BlsI	GCNGC	6 cut(s)	13, 101, 104, 107, 231, 272
Bme1390I	CCNGG	2 cut(s)	298, 299
BmeT110I	CYCGRG	1 cut(s)	297
BmrFI	CCNGG	2 cut(s)	298, 299
Bpu10I	CCTNAGC	1 cut(s)	71
BpuMI	CCSGG	2 cut(s)	298, 299
BsaBI	GATNNNNATC	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	297, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	303
Bse8I	GATNNNNATC	1 cut(s)	168
BseDI	CCNNGG	2 cut(s)	297, 298
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	216, 282
BsiHKAI	GWGCWC	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	303
BsmAI	GTCTC	1 cut(s)	14
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	280
BsoBI	CYCGRG	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	239
BspACI	CCGC	4 cut(s)	100, 103, 106, 196
BspMAI	CTGCAG	1 cut(s)	234
BssECI	CCNNGG	2 cut(s)	297, 298
BssNI	GRCGYC	1 cut(s)	97
BstACI	GRCGYC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	71
BstMAI	GTCTC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 276
BstNSI	RCATGY	3 cut(s)	18, 160, 263
BstSCI	CCNGG	2 cut(s)	296, 297
BstSFI	CTRYAG	1 cut(s)	230
BstV1I	GCAGC	2 cut(s)	216, 282
BtgZI	GCGATG	1 cut(s)	260
Cfr9I	CCCGGG	1 cut(s)	297
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	4 cut(s)	15, 157, 260, 281
CviJI	RGCY	5 cut(s)	11, 70, 229, 237, 273
CviKI_1	RGCY	5 cut(s)	11, 70, 229, 237, 273
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	1 cut(s)	71
Ecl136II	GAGCTC	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	239
Eco53kI	GAGCTC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	118
Eco88I	CYCGRG	1 cut(s)	297
EcoICRI	GAGCTC	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	239
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	4 cut(s)	18, 160, 263, 284
FaiI	YATR	6 cut(s)	16, 122, 158, 174, 261, 282
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	4 cut(s)	14, 156, 259, 280
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	6 cut(s)	12, 100, 103, 106, 230, 271
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	6 cut(s)	12, 100, 103, 106, 230, 271
FspBI	CTAG	2 cut(s)	51, 81
GluI	GCNGC	6 cut(s)	12, 100, 103, 106, 230, 271
HapII	CCGG	1 cut(s)	298
HgaI	GACGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	97
Hin1II	CATG	4 cut(s)	18, 160, 263, 284
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	298
Hpy166II	GTNNAC	3 cut(s)	91, 208, 244
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	3 cut(s)	91, 208, 244
Hpy99I	CGWCG	1 cut(s)	99
HpyAV	CCTTC	2 cut(s)	258, 297
HpyCH4IV	ACGT	2 cut(s)	23, 183
HpyCH4V	TGCA	3 cut(s)	14, 35, 232
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 276
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	2 cut(s)	23, 183
Hsp92I	GRCGYC	1 cut(s)	97
Hsp92II	CATG	4 cut(s)	18, 160, 263, 284
LpnPI	CCDG	3 cut(s)	196, 271, 311
Lsp1109I	GCAGC	2 cut(s)	216, 282
MaeI	CTAG	2 cut(s)	51, 81
MaeII	ACGT	2 cut(s)	23, 183
MaeIII	GTNAC	1 cut(s)	262
MboII	GAAGA	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	1 cut(s)	110
MnlI	CCTC	1 cut(s)	78
MseI	TTAA	2 cut(s)	179, 290
MslI	CAYNNNNRTG	1 cut(s)	279
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	2 cut(s)	298, 299
MwoI	GCNNNNNNNGC	2 cut(s)	105, 276
NciI	CCSGG	2 cut(s)	298, 299
NlaIII	CATG	4 cut(s)	18, 160, 263, 284
NspI	RCATGY	3 cut(s)	18, 160, 263
PciI	ACATGT	1 cut(s)	156
PkrI	GCNGC	6 cut(s)	13, 101, 104, 107, 231, 272
PscI	ACATGT	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	239
PstI	CTGCAG	1 cut(s)	234
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	279
SacI	GAGCTC	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	179, 290
SatI	GCNGC	6 cut(s)	12, 100, 103, 106, 230, 271
ScrFI	CCNGG	2 cut(s)	298, 299
SduI	GDGCHC	1 cut(s)	239
SetI	ASST	6 cut(s)	26, 72, 186, 239, 290, 308
SfcI	CTRYAG	1 cut(s)	230
SmaI	CCCGGG	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	279
SpeI	ACTAGT	1 cut(s)	50
Sse9I	AATT	1 cut(s)	110
SsiI	CCGC	4 cut(s)	100, 103, 106, 196
SspMI	CTAG	2 cut(s)	51, 81
SstI	GAGCTC	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	296, 297
TaiI	ACGT	2 cut(s)	26, 186
TaqI	TCGA	1 cut(s)	140
TaqII	GACCGA	1 cut(s)	108
TasI	AATT	1 cut(s)	110
TauI	GCSGC	3 cut(s)	102, 105, 108
Tru1I	TTAA	2 cut(s)	179, 290
Tru9I	TTAA	2 cut(s)	179, 290
TseI	GCWGC	3 cut(s)	11, 229, 270
TspMI	CCCGGG	1 cut(s)	297
XceI	RCATGY	3 cut(s)	18, 160, 263
XmaI	CCCGGG	1 cut(s)	297
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	2 cut(s)	51, 81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.