Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006593

Physical Location & Seq

Genomic Coordinates Forward (+)

63066302 .. 63067463

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G038160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGGGATTGTCATTAGTAAAGCTACGGATGGGCTCGGCGACCTGCTTGAAAAAACATTTTTGTCTCCATTTAAGACTATGTTTGATGGATCATGCCAGGAGTGTTCAGGACCTTGGGATTTGGTTTGTTTCATTGAGCATCTATGCGTCTCCAATCTGTTGAAACTGCTGATGATCCTGGTCCTTTGTTACATAACATTACTATTCTTCTATTTAGTATTCAAGTTGGGGATCTTCCAATGCATTGGAAAAAGCCTCTGTAAAATGTGCTGGGCTGCATGTGAGACATATTGGTTTGCGCTACATGATATTTGTAGTTTCGTGTGGTACAAGTTGAGGAACACTAAGAGGGTAAACCGTCGTCGCCGACGCCATCTCCACCACCGCCAATTTCGAGACATTGAACAAGGCTACGGTTCAAGTGGGGATAATGAGTTGTGGGACAATTATCGTAATCTTAATGTTAGTAGAAAGCGAAAGTCACTCAGCAGGAGAAGAAAAGATAGGGTGCAGAGCTCTGTTAACCGTTCGAGTAGGCATGGCACTCGCAGCCACCATCATCGTCATGTAAGGTTAAAGTCTAGGAGTATGTCTGTTCGCGTTACGGGCAGGTCACAAAGACTAAAAAGCTCGAGACGTGTGAAAATAAGCAAGGTAACAAATGTTCGAAGGAAAACCAGAACTTCTAAGAGGAGGAGGCTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

27.94

Weight (kDa)

11.1

Isoelectric Point (pI)

70.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78922
fragaria_vesca	FvH4_4g20570 FvH4_6g36610 FvH4_6g36610 FvH4_6g36610
malus_domestica	MD04G1024200.v1.1 MD04G1024400.v1.1
prunus_persica	Prupe.3G025100_v2.0.a1 Prupe.3G025100_v2.0.a1
pyrus_communis	pycom04g02080
rosa_chinensis	RchiOBHm_Chr2g0149081
rosa_laevigata	RLG00000002179 RLG00000020367
rosa_multiflora	Rmu_sc0002345.1_g000002 Rmu_sc0012763.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098480
rosa_rugosa	Rorug02G0409100
rosa_samantha	Rh2AG468500 Rh2BG481200 Rh2CG454700 Rh2DG490000 Rh7AG339700 Rh7CG357700 Rh7DG338400
rosa_wichuraiana	Rw2G038160 Rw7G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	51, 600
AccII	CGCG	1 cut(s)	600
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	3 cut(s)	97, 169, 239
AcyI	GRCGYC	1 cut(s)	370
AfaI	GTAC	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	637
AgsI	TTSAA	5 cut(s)	50, 163, 223, 404, 420
AjiI	CACGTC	1 cut(s)	638
AjnI	CCWGG	2 cut(s)	96, 177
AluBI	AGCT	3 cut(s)	23, 516, 630
AluI	AGCT	3 cut(s)	23, 516, 630
Alw21I	GWGCWC	1 cut(s)	518
Alw26I	GTCTC	5 cut(s)	69, 154, 278, 390, 628
AlwI	GGATC	3 cut(s)	97, 169, 239
Ama87I	CYCGRG	1 cut(s)	631
ApeKI	GCWGC	2 cut(s)	275, 549
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	110, 181
AsuII	TTCGAA	1 cut(s)	667
AvaI	CYCGRG	1 cut(s)	631
AvaII	GGWCC	2 cut(s)	110, 181
BanII	GRGCYC	2 cut(s)	36, 518
Bbv12I	GWGCWC	1 cut(s)	518
BbvI	GCAGC	2 cut(s)	262, 561
BccI	CCATC	4 cut(s)	23, 80, 381, 564
BcgI	CGANNNNNNTGC	2 cut(s)	527, 561
BciT130I	CCWGG	2 cut(s)	98, 179
BcoDI	GTCTC	5 cut(s)	69, 154, 278, 390, 628
BfaI	CTAG	1 cut(s)	582
BfuAI	ACCTGC	2 cut(s)	51, 600
BisI	GCNGC	2 cut(s)	276, 550
BlsI	GCNGC	2 cut(s)	277, 551
Bme1390I	CCNGG	2 cut(s)	98, 179
Bme18I	GGWCC	2 cut(s)	110, 181
BmeT110I	CYCGRG	1 cut(s)	631
BmgBI	CACGTC	1 cut(s)	638
BmgT120I	GGNCC	2 cut(s)	110, 181
BmrFI	CCNGG	2 cut(s)	98, 179
BmsI	GCATC	1 cut(s)	148
Bpu10I	CCTNAGC	1 cut(s)	701
Bpu14I	TTCGAA	1 cut(s)	667
BsaHI	GRCGYC	1 cut(s)	370
BsaJI	CCNNGG	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
BseBI	CCWGG	2 cut(s)	98, 179
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	499
BseRI	GAGGAG	1 cut(s)	706
BseXI	GCAGC	2 cut(s)	262, 561
BseYI	CCCAGC	1 cut(s)	270
BsgI	GTGCAG	1 cut(s)	530
Bsh1236I	CGCG	1 cut(s)	600
BsiHKAI	GWGCWC	1 cut(s)	518
BsiHKCI	CYCGRG	1 cut(s)	631
BslFI	GGGAC	1 cut(s)	455
BsmAI	GTCTC	5 cut(s)	69, 154, 278, 390, 628
BsmBI	CGTCTC	2 cut(s)	154, 628
BsmFI	GGGAC	1 cut(s)	455
BsoBI	CYCGRG	1 cut(s)	631
Bsp119I	TTCGAA	1 cut(s)	667
Bsp1286I	GDGCHC	2 cut(s)	36, 518
Bsp143I	GATC	3 cut(s)	89, 174, 231
BspACI	CCGC	1 cut(s)	385
BspCNI	CTCAG	1 cut(s)	498
BspFNI	CGCG	1 cut(s)	600
BspMI	ACCTGC	2 cut(s)	51, 600
BspPI	GGATC	3 cut(s)	97, 169, 239
BspT104I	TTCGAA	1 cut(s)	667
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	3 cut(s)	89, 174, 231
BssNI	GRCGYC	1 cut(s)	370
BssT1I	CCWWGG	1 cut(s)	113
Bst2UI	CCWGG	2 cut(s)	98, 179
Bst4CI	ACNGT	3 cut(s)	359, 416, 527
BstACI	GRCGYC	1 cut(s)	370
BstBI	TTCGAA	1 cut(s)	667
BstDEI	CTNAG	4 cut(s)	345, 485, 687, 701
BstF5I	GGATG	1 cut(s)	34
BstFNI	CGCG	1 cut(s)	600
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	3 cut(s)	92, 177, 234
BstMAI	GTCTC	5 cut(s)	69, 154, 278, 390, 628
BstMBI	GATC	3 cut(s)	89, 174, 231
BstMWI	GCNNNNNNNGC	2 cut(s)	549, 606
BstNI	CCWGG	2 cut(s)	98, 179
BstNSI	RCATGY	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	96, 177
BstUI	CGCG	1 cut(s)	600
BstV1I	GCAGC	2 cut(s)	262, 561
BstX2I	RGATCY	1 cut(s)	231
BstXI	CCANNNNNNTGG	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	231
BtrI	CACGTC	1 cut(s)	638
BtsCI	GGATG	1 cut(s)	34
BveI	ACCTGC	2 cut(s)	51, 600
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	110, 181
CseI	GACGC	2 cut(s)	136, 378
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	5 cut(s)	93, 279, 305, 539, 566
CviJI	RGCY	9 cut(s)	23, 34, 255, 275, 411, 516, 552, 630, 700
CviKI_1	RGCY	9 cut(s)	23, 34, 255, 275, 411, 516, 552, 630, 700
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	4 cut(s)	345, 485, 687, 701
DpnI	GATC	3 cut(s)	91, 176, 233
DpnII	GATC	3 cut(s)	89, 174, 231
Ecl136II	GAGCTC	1 cut(s)	516
Eco130I	CCWWGG	1 cut(s)	113
Eco24I	GRGCYC	2 cut(s)	36, 518
Eco47I	GGWCC	2 cut(s)	110, 181
Eco53kI	GAGCTC	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	631
EcoICRI	GAGCTC	1 cut(s)	516
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	2 cut(s)	96, 177
EcoT14I	CCWWGG	1 cut(s)	113
EcoT22I	ATGCAT	1 cut(s)	245
EcoT38I	GRGCYC	2 cut(s)	36, 518
ErhI	CCWWGG	1 cut(s)	113
Esp3I	CGTCTC	2 cut(s)	154, 628
FaeI	CATG	5 cut(s)	96, 282, 308, 542, 569
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	5 cut(s)	92, 278, 304, 538, 565
Fnu4HI	GCNGC	2 cut(s)	276, 550
FokI	GGATG	1 cut(s)	41
FriOI	GRGCYC	2 cut(s)	36, 518
Fsp4HI	GCNGC	2 cut(s)	276, 550
FspBI	CTAG	1 cut(s)	582
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	2 cut(s)	276, 550
GsaI	CCCAGC	1 cut(s)	274
HgaI	GACGC	2 cut(s)	136, 378
HhaI	GCGC	1 cut(s)	301
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	5 cut(s)	96, 282, 308, 542, 569
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HpaI	GTTAAC	1 cut(s)	523
Hpy166II	GTNNAC	2 cut(s)	355, 523
Hpy188III	TCNNGA	3 cut(s)	108, 395, 633
Hpy8I	GTNNAC	2 cut(s)	355, 523
Hpy99I	CGWCG	3 cut(s)	363, 366, 372
HpyAV	CCTTC	1 cut(s)	663
HpyCH4III	ACNGT	3 cut(s)	359, 416, 527
HpyCH4IV	ACGT	1 cut(s)	637
HpyCH4V	TGCA	3 cut(s)	243, 278, 511
HpyF10VI	GCNNNNNNNGC	2 cut(s)	549, 606
HpyF3I	CTNAG	4 cut(s)	345, 485, 687, 701
HpySE526I	ACGT	1 cut(s)	637
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	5 cut(s)	96, 282, 308, 542, 569
HspAI	GCGC	1 cut(s)	299
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	3 cut(s)	89, 174, 231
Lsp1109I	GCAGC	2 cut(s)	262, 561
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	582
MaeII	ACGT	1 cut(s)	637
MaeIII	GTNAC	5 cut(s)	188, 480, 601, 612, 655
MalI	GATC	3 cut(s)	91, 176, 233
MboI	GATC	3 cut(s)	89, 174, 231
MboII	GAAGA	3 cut(s)	199, 226, 507
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	2 cut(s)	36, 518
MluCI	AATT	2 cut(s)	389, 445
MnlI	CCTC	6 cut(s)	266, 330, 342, 684, 687, 690
Mph1103I	ATGCAT	1 cut(s)	245
MseI	TTAA	4 cut(s)	72, 459, 522, 575
MslI	CAYNNNNRTG	1 cut(s)	564
MspR9I	CCNGG	2 cut(s)	98, 179
MvaI	CCWGG	2 cut(s)	98, 179
MvnI	CGCG	1 cut(s)	600
MwoI	GCNNNNNNNGC	2 cut(s)	549, 606
NdeII	GATC	3 cut(s)	89, 174, 231
NlaIII	CATG	5 cut(s)	96, 282, 308, 542, 569
NmeAIII	GCCGAG	1 cut(s)	15
NmuCI	GTSAC	2 cut(s)	480, 612
NsiI	ATGCAT	1 cut(s)	245
NspI	RCATGY	1 cut(s)	282
NspV	TTCGAA	1 cut(s)	667
PaeR7I	CTCGAG	1 cut(s)	631
PkrI	GCNGC	2 cut(s)	277, 551
PpuMI	RGGWCCY	1 cut(s)	110
Psp124BI	GAGCTC	1 cut(s)	518
Psp5II	RGGWCCY	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	96, 177
PspFI	CCCAGC	1 cut(s)	270
PspGI	CCWGG	2 cut(s)	96, 177
PspPI	GGNCC	2 cut(s)	110, 181
PspPPI	RGGWCCY	1 cut(s)	110
PsrI	GAACNNNNNNTAC	2 cut(s)	648, 680
PsuI	RGATCY	1 cut(s)	231
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	564
SacI	GAGCTC	1 cut(s)	518
SaqAI	TTAA	4 cut(s)	72, 459, 522, 575
SatI	GCNGC	2 cut(s)	276, 550
Sau3AI	GATC	3 cut(s)	89, 174, 231
Sau96I	GGNCC	2 cut(s)	110, 181
ScrFI	CCNGG	2 cut(s)	98, 179
SduI	GDGCHC	2 cut(s)	36, 518
SfaNI	GCATC	1 cut(s)	148
Sfr274I	CTCGAG	1 cut(s)	631
SfuI	TTCGAA	1 cut(s)	667
SinI	GGWCC	2 cut(s)	110, 181
SlaI	CTCGAG	1 cut(s)	631
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
Sse9I	AATT	2 cut(s)	389, 445
SsiI	CCGC	1 cut(s)	385
SspMI	CTAG	1 cut(s)	582
SstI	GAGCTC	1 cut(s)	518
StyD4I	CCNGG	2 cut(s)	96, 177
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	3 cut(s)	359, 416, 527
TaiI	ACGT	1 cut(s)	640
TaqI	TCGA	4 cut(s)	394, 530, 632, 667
TasI	AATT	2 cut(s)	389, 445
Tru1I	TTAA	4 cut(s)	72, 459, 522, 575
Tru9I	TTAA	4 cut(s)	72, 459, 522, 575
TseFI	GTSAC	2 cut(s)	480, 612
TseI	GCWGC	2 cut(s)	275, 549
Tsp45I	GTSAC	2 cut(s)	480, 612
TspDTI	ATGAA	1 cut(s)	121
TspGWI	ACGGA	1 cut(s)	41
VpaK11BI	GGWCC	2 cut(s)	110, 181
XceI	RCATGY	1 cut(s)	282
XhoI	CTCGAG	1 cut(s)	631
XspI	CTAG	1 cut(s)	582
Zsp2I	ATGCAT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.