AT1G79070

Snapin/Pallidin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009347
Physical Location & Seq
Reverse (-)
29744271 .. 29745815
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79070.2

Sequence Viewer

Length: 417 bp
ATGGAGCAGCTATCAGACTCGGACCACCGCGATTCTGCTGATGCAACTACTAGCTCATGTCAATCCACCACCGCAGAAGATGGTCAATGCGGCGGCGGCGGAGAAGCAATGGCTCGAGGCTTATCAGCGATGCTCGAGTCCGTCATTAAAGACTTTGACTCTAAAGCTCTTGACACGCTCAATAGCCAAGATGAACTCTCCGGTTCTCTCGATCGCCTTGTCCAAGAGCTAGATCAATTACTGGAAAACGCTCCATTGCCATTCATTGTACAACACGCATCGAGAATTTCCAGCGTCAAACAAAGAGTTTCATCTCTGAATCTTGTTCTTAAATCTGTCCAACGACGTATCGATAACATCGATCACATGCTCTCTGCCAACACCACGCAAGAGAAAGCATCCTCGGAAACTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Snapin_Pallidin

Protein Analysis

138

Amino Acids

14.88

Weight (kDa)

4.56

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snapin_Pallidin PF14712 35 - 120 4.2e-21 Snapin/Pallidin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 30
AciI CCGC 6 cut(s) 28, 72, 90, 93, 96, 99
AcsI RAATTY 1 cut(s) 285
AfaI GTAC 1 cut(s) 270
AluBI AGCT 4 cut(s) 10, 54, 167, 229
AluI AGCT 4 cut(s) 10, 54, 167, 229
Ama87I CYCGRG 2 cut(s) 114, 134
ApeKI GCWGC 1 cut(s) 7
ApoI RAATTY 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 22
AvaI CYCGRG 2 cut(s) 114, 134
AvaII GGWCC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 19
BccI CCATC 1 cut(s) 74
BfaI CTAG 2 cut(s) 51, 230
BisI GCNGC 4 cut(s) 8, 91, 94, 97
BlsI GCNGC 4 cut(s) 9, 92, 95, 98
Bme18I GGWCC 1 cut(s) 22
BmeT110I CYCGRG 2 cut(s) 114, 134
BmgT120I GGNCC 1 cut(s) 22
BmsI GCATC 4 cut(s) 31, 120, 287, 407
Bsa29I ATCGAT 2 cut(s) 351, 360
BsaJI CCNNGG 1 cut(s) 402
BsaWI WCCGGW 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 246
Bse3DI GCAATG 2 cut(s) 114, 254
BseCI ATCGAT 2 cut(s) 351, 360
BseDI CCNNGG 1 cut(s) 402
BseGI GGATG 1 cut(s) 398
BseMI GCAATG 2 cut(s) 114, 254
BseNI ACTGG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 214
BshVI ATCGAT 2 cut(s) 351, 360
BsiEI CGRYCG 1 cut(s) 214
BsiHKCI CYCGRG 2 cut(s) 114, 134
BsiSI CCGG 1 cut(s) 201
BsoBI CYCGRG 2 cut(s) 114, 134
Bsp1407I TGTACA 1 cut(s) 268
Bsp143I GATC 3 cut(s) 211, 232, 361
BspACI CCGC 6 cut(s) 28, 72, 90, 93, 96, 99
BspDI ATCGAT 2 cut(s) 351, 360
BspFNI CGCG 1 cut(s) 30
BsrDI GCAATG 2 cut(s) 114, 254
BsrGI TGTACA 1 cut(s) 268
BsrI ACTGG 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 402
BssMI GATC 3 cut(s) 211, 232, 361
BstAUI TGTACA 1 cut(s) 268
BstF5I GGATG 1 cut(s) 398
BstFNI CGCG 1 cut(s) 30
BstKTI GATC 3 cut(s) 214, 235, 364
BstMBI GATC 3 cut(s) 211, 232, 361
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNSI RCATGY 1 cut(s) 370
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 19
Bsu15I ATCGAT 2 cut(s) 351, 360
BsuTUI ATCGAT 2 cut(s) 351, 360
BtgZI GCGATG 1 cut(s) 143
BtsCI GGATG 1 cut(s) 398
Cfr13I GGNCC 1 cut(s) 22
ClaI ATCGAT 2 cut(s) 351, 360
CseI GACGC 1 cut(s) 283
Csp6I GTAC 1 cut(s) 269
CviAII CATG 3 cut(s) 57, 367, 414
CviJI RGCY 7 cut(s) 10, 54, 113, 120, 167, 186, 229
CviKI_1 RGCY 7 cut(s) 10, 54, 113, 120, 167, 186, 229
CviQI GTAC 1 cut(s) 269
DpnI GATC 3 cut(s) 213, 234, 363
DpnII GATC 3 cut(s) 211, 232, 361
EciI GGCGGA 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 22
Eco88I CYCGRG 2 cut(s) 114, 134
FaeI CATG 3 cut(s) 60, 370, 417
FaiI YATR 3 cut(s) 58, 368, 415
FatI CATG 3 cut(s) 56, 366, 413
Fnu4HI GCNGC 4 cut(s) 8, 91, 94, 97
FokI GGATG 1 cut(s) 385
Fsp4HI GCNGC 4 cut(s) 8, 91, 94, 97
FspBI CTAG 2 cut(s) 51, 230
GluI GCNGC 4 cut(s) 8, 91, 94, 97
HapII CCGG 1 cut(s) 201
HgaI GACGC 1 cut(s) 283
Hin1II CATG 3 cut(s) 60, 370, 417
HinfI GANTC 5 cut(s) 17, 32, 137, 158, 319
HpaII CCGG 1 cut(s) 201
Hpy188I TCNGA 4 cut(s) 16, 22, 318, 406
Hpy188III TCNNGA 3 cut(s) 170, 209, 282
Hpy99I CGWCG 1 cut(s) 348
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpySE526I ACGT 1 cut(s) 346
Hsp92II CATG 3 cut(s) 60, 370, 417
Kzo9I GATC 3 cut(s) 211, 232, 361
LmnI GCTCC 2 cut(s) 4, 256
LpnPI CCDG 3 cut(s) 214, 227, 304
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 4 cut(s) 31, 120, 287, 407
MaeI CTAG 2 cut(s) 51, 230
MaeII ACGT 1 cut(s) 346
MalI GATC 3 cut(s) 213, 234, 363
MboI GATC 3 cut(s) 211, 232, 361
MboII GAAGA 1 cut(s) 89
MluCI AATT 2 cut(s) 236, 285
MlyI GAGTC 3 cut(s) 11, 146, 152
MmeI TCCRAC 1 cut(s) 364
MnlI CCTC 2 cut(s) 110, 412
MseI TTAA 2 cut(s) 147, 330
MspI CCGG 1 cut(s) 201
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 96
NdeII GATC 3 cut(s) 211, 232, 361
NlaIII CATG 3 cut(s) 60, 370, 417
NspI RCATGY 1 cut(s) 370
PaeR7I CTCGAG 2 cut(s) 114, 134
PcsI WCGNNNNNNNCGW 1 cut(s) 357
PfeI GAWTC 2 cut(s) 32, 319
PkrI GCNGC 4 cut(s) 9, 92, 95, 98
Ple19I CGATCG 1 cut(s) 214
PleI GAGTC 3 cut(s) 11, 145, 152
PpsI GAGTC 3 cut(s) 11, 145, 152
PspPI GGNCC 1 cut(s) 22
PspXI VCTCGAGB 2 cut(s) 114, 134
PvuI CGATCG 1 cut(s) 214
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
SaqAI TTAA 2 cut(s) 147, 330
SatI GCNGC 4 cut(s) 8, 91, 94, 97
Sau3AI GATC 3 cut(s) 211, 232, 361
Sau96I GGNCC 1 cut(s) 22
SchI GAGTC 3 cut(s) 11, 146, 152
SetI ASST 5 cut(s) 12, 56, 169, 231, 349
SfaNI GCATC 4 cut(s) 31, 120, 287, 407
Sfr274I CTCGAG 2 cut(s) 114, 134
SinI GGWCC 1 cut(s) 22
SlaI CTCGAG 2 cut(s) 114, 134
SmlI CTYRAG 2 cut(s) 114, 134
SmoI CTYRAG 2 cut(s) 114, 134
Sse9I AATT 2 cut(s) 236, 285
SsiI CCGC 6 cut(s) 28, 72, 90, 93, 96, 99
SspMI CTAG 2 cut(s) 51, 230
TaiI ACGT 1 cut(s) 349
TaqI TCGA 6 cut(s) 115, 135, 210, 281, 351, 360
TasI AATT 2 cut(s) 236, 285
TatI WGTACW 1 cut(s) 268
TauI GCSGC 3 cut(s) 93, 96, 99
TfiI GAWTC 2 cut(s) 32, 319
Tru1I TTAA 2 cut(s) 147, 330
Tru9I TTAA 2 cut(s) 147, 330
TseI GCWGC 1 cut(s) 7
TspDTI ATGAA 3 cut(s) 207, 253, 300
TspGWI ACGGA 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 22
XapI RAATTY 1 cut(s) 285
XceI RCATGY 1 cut(s) 370
XhoI CTCGAG 2 cut(s) 114, 134
XspI CTAG 2 cut(s) 51, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.