Rroxscaffold_1G00052530

Snapin/Pallidin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0009347
Physical Location & Seq
Reverse (-)
73312080 .. 73313490
1411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052530.1

Sequence Viewer

Length: 492 bp
ATGGAAAACGGAGACAACCACGGCGGCGAGTCATCGTACCCAAATGCCGACCAGACCGAGACCGAGACCGAGATTCAGAAGAAGACAACATTGGAATCGGAGGCTTTGGCAAAGGGACTGTCTTCCACCCTCGCCACCATCATTCAAGACTTCGATTCCAAAGCTCAGCAAACCTTCACCAGCCAAGACCAGCTCTCTGCAGCCCTCGATCGCCTCACCCGCGAGCTTGATAAGTTGTTAGAGGCTGCTCCGTTGCCGTTCATAATGCAACACGCCGCGAAGATAACGGCGGTTAGGAAGAGGGTTTTGTCTCTCAACTCCGTTTTGAAGAATGTTCAACGCCGTCTTGATAATATAGACCGCATCTTAACTCTGGGCGTCCCACATCAAAACCAACATGAGCATCCAAAGGATCTGAGTTTATGTGGCAATGGTCATACAAGTTACTCTGAACAAAGAGGCATAGGCTATATAGATGTGAACTTCTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Snapin_Pallidin

Protein Analysis

163

Amino Acids

18.09

Weight (kDa)

5.65

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snapin_Pallidin PF14712 34 - 119 1.1e-21 Snapin/Pallidin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 222, 278
AciI CCGC 5 cut(s) 24, 220, 276, 290, 361
AclWI GGATC 1 cut(s) 420
AcyI GRCGYC 1 cut(s) 378
AfaI GTAC 1 cut(s) 38
AgsI TTSAA 3 cut(s) 146, 328, 338
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AluBI AGCT 3 cut(s) 164, 193, 226
AluI AGCT 3 cut(s) 164, 193, 226
Alw26I GTCTC 4 cut(s) 6, 53, 59, 315
AlwI GGATC 1 cut(s) 420
ApeKI GCWGC 2 cut(s) 200, 245
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AsuHPI GGTGA 2 cut(s) 169, 208
BbsI GAAGAC 2 cut(s) 89, 114
BbvI GCAGC 2 cut(s) 212, 232
BccI CCATC 1 cut(s) 146
BceAI ACGGC 4 cut(s) 37, 241, 303, 327
BcoDI GTCTC 4 cut(s) 6, 53, 59, 315
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 4 cut(s) 25, 201, 246, 276
BlpI GCTNAGC 1 cut(s) 165
BlsI GCNGC 4 cut(s) 26, 202, 247, 277
BmsI GCATC 2 cut(s) 372, 412
BpiI GAAGAC 2 cut(s) 89, 114
Bpu1102I GCTNAGC 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 378
BsaI GGTCTC 2 cut(s) 53, 59
BsaJI CCNNGG 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 436
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 1 cut(s) 403
BseMI GCAATG 1 cut(s) 436
BseMII CTCAG 2 cut(s) 179, 407
BseXI GCAGC 2 cut(s) 212, 232
Bsh1236I CGCG 2 cut(s) 222, 278
Bsh1285I CGRYCG 1 cut(s) 211
BsiEI CGRYCG 1 cut(s) 211
BslFI GGGAC 2 cut(s) 129, 365
BsmAI GTCTC 4 cut(s) 6, 53, 59, 315
BsmFI GGGAC 2 cut(s) 129, 365
Bso31I GGTCTC 2 cut(s) 53, 59
Bsp143I GATC 2 cut(s) 208, 412
Bsp1720I GCTNAGC 1 cut(s) 165
BspACI CCGC 5 cut(s) 24, 220, 276, 290, 361
BspCNI CTCAG 2 cut(s) 178, 408
BspFNI CGCG 2 cut(s) 222, 278
BspMAI CTGCAG 1 cut(s) 202
BspPI GGATC 1 cut(s) 420
BspTNI GGTCTC 2 cut(s) 53, 59
BsrDI GCAATG 1 cut(s) 436
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 2 cut(s) 208, 412
BssNI GRCGYC 1 cut(s) 378
Bst4CI ACNGT 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 293
BstACI GRCGYC 1 cut(s) 378
BstC8I GCNNGC 1 cut(s) 224
BstDEI CTNAG 2 cut(s) 165, 416
BstDSI CCRYGG 1 cut(s) 19
BstF5I GGATG 1 cut(s) 403
BstFNI CGCG 2 cut(s) 222, 278
BstKTI GATC 2 cut(s) 211, 415
BstMAI GTCTC 4 cut(s) 6, 53, 59, 315
BstMBI GATC 2 cut(s) 208, 412
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 219
BstSFI CTRYAG 1 cut(s) 198
BstUI CGCG 2 cut(s) 222, 278
BstV1I GCAGC 2 cut(s) 212, 232
BstV2I GAAGAC 2 cut(s) 89, 114
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BtgI CCRYGG 1 cut(s) 19
BtsCI GGATG 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 224
CseI GACGC 1 cut(s) 367
Csp6I GTAC 1 cut(s) 37
CviAII CATG 1 cut(s) 398
CviJI RGCY 8 cut(s) 104, 164, 183, 193, 203, 226, 245, 468
CviKI_1 RGCY 8 cut(s) 104, 164, 183, 193, 203, 226, 245, 468
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 2 cut(s) 165, 416
DpnI GATC 2 cut(s) 210, 414
DpnII GATC 2 cut(s) 208, 412
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Eco31I GGTCTC 2 cut(s) 53, 59
FaeI CATG 1 cut(s) 401
FaiI YATR 8 cut(s) 263, 356, 399, 424, 438, 464, 471, 473
FaqI GGGAC 2 cut(s) 129, 365
FatI CATG 1 cut(s) 397
FauI CCCGC 1 cut(s) 227
Fnu4HI GCNGC 4 cut(s) 25, 201, 246, 276
FokI GGATG 1 cut(s) 390
Fsp4HI GCNGC 4 cut(s) 25, 201, 246, 276
GluI GCNGC 4 cut(s) 25, 201, 246, 276
HgaI GACGC 1 cut(s) 367
Hin1I GRCGYC 1 cut(s) 378
Hin1II CATG 1 cut(s) 401
HinfI GANTC 4 cut(s) 29, 73, 95, 155
HphI GGTGA 2 cut(s) 169, 208
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 4 cut(s) 78, 100, 417, 451
Hpy188III TCNNGA 2 cut(s) 146, 347
Hpy8I GTNNAC 1 cut(s) 481
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4V TGCA 2 cut(s) 200, 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 219
HpyF3I CTNAG 2 cut(s) 165, 416
Hsp92I GRCGYC 1 cut(s) 378
Hsp92II CATG 1 cut(s) 401
Kzo9I GATC 2 cut(s) 208, 412
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 4 cut(s) 65, 193, 203, 359
Lsp1109I GCAGC 2 cut(s) 212, 232
LweI GCATC 2 cut(s) 372, 412
MaeIII GTNAC 1 cut(s) 443
MalI GATC 2 cut(s) 210, 414
MboI GATC 2 cut(s) 208, 412
MboII GAAGA 6 cut(s) 91, 94, 114, 292, 310, 340
MflI RGATCY 1 cut(s) 412
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 7 cut(s) 94, 140, 215, 224, 235, 294, 452
MseI TTAA 1 cut(s) 368
MvnI CGCG 2 cut(s) 222, 278
MwoI GCNNNNNNNGC 1 cut(s) 219
NdeII GATC 2 cut(s) 208, 412
NlaIII CATG 1 cut(s) 401
PfeI GAWTC 3 cut(s) 73, 95, 155
PkrI GCNGC 4 cut(s) 26, 202, 247, 277
Ple19I CGATCG 1 cut(s) 211
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PstI CTGCAG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 412
PvuI CGATCG 1 cut(s) 211
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SaqAI TTAA 1 cut(s) 368
SatI GCNGC 4 cut(s) 25, 201, 246, 276
Sau3AI GATC 2 cut(s) 208, 412
SchI GAGTC 1 cut(s) 38
SetI ASST 4 cut(s) 166, 176, 195, 228
SfaNI GCATC 2 cut(s) 372, 412
SfcI CTRYAG 1 cut(s) 198
SsiI CCGC 5 cut(s) 24, 220, 276, 290, 361
TaaI ACNGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 153, 207
TaqII GACCGA 3 cut(s) 71, 77, 83
TauI GCSGC 2 cut(s) 27, 278
TfiI GAWTC 3 cut(s) 73, 95, 155
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TseI GCWGC 2 cut(s) 200, 245
TspDTI ATGAA 1 cut(s) 250
TspGWI ACGGA 3 cut(s) 24, 240, 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.