Rorug05G0096100

Snapin/Pallidin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009347
Physical Location & Seq
Reverse (-)
8534516 .. 8537229
2714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0096100.1

Sequence Viewer

Length: 933 bp
ATGGGTGTTAGCTCTCTTCGGCATTCTGCATTATTTTTCCTGTTTCTCTTCTTTAGTTCAGGTTCAAGTGTTCCAAAAAATCCTCCATTGGAAGCAATCCAACAAAGCAAAAGACAAGTGATTCATGAAAACCATATACTTTTCTCATCAGCAGTGTCTACTACCCAGCTTGATTCGATTCCTGTCGTAAATCCAAGTCCAACTGTAACGACTCCCACACTTGTCTTCCCAGCATCCCCACCACCACCAACCACCATGACAACCCCCACCACTCCCACCACAACCCCAACGACTCCCACTACAATCCCGCCGACTCCCCCTATCCCGCCGACTCCCACTACAACCCCGACGACTCCCTTTACAACTCCGACAACTCCCTTTACAACTCCGACAACTCCCTCCACAACCCCTGCATCATCAGGTGGTAGTGGTAGTTGGTGTATAGCAAGCCAATCAGCTTCAGAAACTGCCCTGCAGGTAGCTCTTGATTATGCTTGTGGCTATGGAGGTGCAGACTGTTCACCAATTCAACCAAGTGGAAGCTGTTATAACCCAAACACTCTCCGGGATCACGCTTCCTATGCCTTCAATAACTATTACCAGAAGAACCCAGCTCCAACTAGCTGTAGTTTTGGAGGAACAGCACAACTGACCACCACTGATCCAAGTAGTGGTAGCTGTCGCTATCCATCATCCACAGCATCAACCAGCTCGAGTACACCACCTTACGGTCCTTACCAGACTCCACCATCAACACCGACAAGTATGACAACGCCACCATCCCCGACCACCCCGCTTATAGATACTCCAGGTGGATCAACAATTTATGGTTCGCCATCAGAGTCCCCCAACGCAGCCAACTCTATCTCATCTTGCATGCTTCTGCTGTCCACCACACTCTTGGGGTCACTTCTTGCAGCAATTTACCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Snapin_Pallidin

Protein Analysis

310

Amino Acids

31.96

Weight (kDa)

5.67

Isoelectric Point (pI)

61.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 145 - 215 1.2e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 549
Acc36I ACCTGC 1 cut(s) 466
AccB7I CCANNNNNTGG 1 cut(s) 671
AccI GTMKAC 1 cut(s) 158
AciI CCGC 3 cut(s) 308, 326, 794
AclWI GGATC 3 cut(s) 576, 656, 823
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 1 cut(s) 718
AfiI CCNNNNNNNGG 2 cut(s) 671, 728
AgsI TTSAA 3 cut(s) 66, 530, 589
AjnI CCWGG 1 cut(s) 808
AluBI AGCT 9 cut(s) 12, 169, 458, 482, 543, 614, 624, 678, 711
AluI AGCT 9 cut(s) 12, 169, 458, 482, 543, 614, 624, 678, 711
AlwI GGATC 3 cut(s) 576, 656, 823
AlwNI CAGNNNCTG 1 cut(s) 467
Ama87I CYCGRG 1 cut(s) 712
ApeKI GCWGC 2 cut(s) 854, 917
AspS9I GGNCC 1 cut(s) 731
AsuC2I CCSGG 1 cut(s) 566
AsuHPI GGTGA 1 cut(s) 513
AvaI CYCGRG 1 cut(s) 712
AvaII GGWCC 1 cut(s) 731
BbsI GAAGAC 1 cut(s) 217
BbvI GCAGC 2 cut(s) 866, 929
BccI CCATC 4 cut(s) 697, 757, 787, 844
BciT130I CCWGG 1 cut(s) 810
BcnI CCSGG 1 cut(s) 566
BfaI CTAG 1 cut(s) 621
BfmI CTRYAG 2 cut(s) 473, 625
BfuAI ACCTGC 1 cut(s) 466
BisI GCNGC 2 cut(s) 855, 918
BlsI GCNGC 2 cut(s) 856, 919
Bme1390I CCNGG 2 cut(s) 566, 810
Bme18I GGWCC 1 cut(s) 731
BmeT110I CYCGRG 1 cut(s) 712
BmgT120I GGNCC 1 cut(s) 731
BmrFI CCNGG 2 cut(s) 566, 810
BmsI GCATC 3 cut(s) 242, 422, 710
BpiI GAAGAC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 792
BpuMI CCSGG 1 cut(s) 566
Bsc4I CCNNNNNNNGG 2 cut(s) 671, 728
BseBI CCWGG 1 cut(s) 810
BseGI GGATG 3 cut(s) 233, 692, 779
BseLI CCNNNNNNNGG 2 cut(s) 671, 728
BseXI GCAGC 2 cut(s) 866, 929
BseYI CCCAGC 3 cut(s) 165, 229, 610
BsgI GTGCAG 1 cut(s) 531
BsiHKCI CYCGRG 1 cut(s) 712
BsiSI CCGG 1 cut(s) 565
BslFI GGGAC 1 cut(s) 829
BslI CCNNNNNNNGG 2 cut(s) 671, 728
BsmFI GGGAC 1 cut(s) 829
BsmI GAATGC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 712
Bsp143I GATC 3 cut(s) 568, 661, 815
BspACI CCGC 3 cut(s) 308, 326, 794
BspHI TCATGA 1 cut(s) 124
BspMAI CTGCAG 1 cut(s) 477
BspMI ACCTGC 1 cut(s) 466
BspPI GGATC 3 cut(s) 576, 656, 823
BssMI GATC 3 cut(s) 568, 661, 815
Bst2UI CCWGG 1 cut(s) 810
Bst4CI ACNGT 3 cut(s) 205, 518, 731
Bst6I CTCTTC 2 cut(s) 21, 53
BstC8I GCNNGC 2 cut(s) 448, 878
BstF5I GGATG 3 cut(s) 233, 692, 779
BstKTI GATC 3 cut(s) 571, 664, 818
BstMBI GATC 3 cut(s) 568, 661, 815
BstMWI GCNNNNNNNGC 1 cut(s) 581
BstNI CCWGG 1 cut(s) 810
BstNSI RCATGY 1 cut(s) 880
BstSCI CCNGG 2 cut(s) 564, 808
BstSFI CTRYAG 2 cut(s) 473, 625
BstV1I GCAGC 2 cut(s) 866, 929
BstV2I GAAGAC 1 cut(s) 217
BstXI CCANNNNNNTGG 1 cut(s) 901
BtsCI GGATG 3 cut(s) 233, 692, 779
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 2 cut(s) 159, 657
BveI ACCTGC 1 cut(s) 466
Cac8I GCNNGC 2 cut(s) 448, 878
CaiI CAGNNNCTG 1 cut(s) 467
CciI TCATGA 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 731
Csp6I GTAC 1 cut(s) 717
CviAII CATG 3 cut(s) 125, 256, 877
CviQI GTAC 1 cut(s) 717
DpnI GATC 3 cut(s) 570, 663, 817
DpnII GATC 3 cut(s) 568, 661, 815
Eam1104I CTCTTC 2 cut(s) 21, 53
EarI CTCTTC 2 cut(s) 21, 53
Eco47I GGWCC 1 cut(s) 731
Eco57I CTGAAG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 712
EcoRII CCWGG 1 cut(s) 808
FaeI CATG 3 cut(s) 128, 259, 880
FaqI GGGAC 1 cut(s) 829
FatI CATG 3 cut(s) 124, 255, 876
FauI CCCGC 3 cut(s) 315, 333, 801
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 2 cut(s) 855, 918
FokI GGATG 3 cut(s) 220, 679, 766
Fsp4HI GCNGC 2 cut(s) 855, 918
FspBI CTAG 1 cut(s) 621
GluI GCNGC 2 cut(s) 855, 918
GsaI CCCAGC 3 cut(s) 169, 233, 614
GsuI CTGGAG 1 cut(s) 792
HapII CCGG 1 cut(s) 565
Hin1II CATG 3 cut(s) 128, 259, 880
HpaII CCGG 1 cut(s) 565
HphI GGTGA 1 cut(s) 513
Hpy166II GTNNAC 4 cut(s) 159, 521, 719, 891
Hpy188I TCNGA 5 cut(s) 369, 390, 463, 841, 932
Hpy188III TCNNGA 2 cut(s) 125, 485
Hpy8I GTNNAC 4 cut(s) 159, 521, 719, 891
Hpy99I CGWCG 1 cut(s) 352
HpyAV CCTTC 1 cut(s) 595
HpyCH4III ACNGT 3 cut(s) 205, 518, 731
HpyCH4V TGCA 6 cut(s) 29, 413, 475, 512, 876, 917
HpyF10VI GCNNNNNNNGC 1 cut(s) 581
Hsp92II CATG 3 cut(s) 128, 259, 880
Kzo9I GATC 3 cut(s) 568, 661, 815
LmnI GCTCC 1 cut(s) 619
Lsp1109I GCAGC 2 cut(s) 866, 929
LweI GCATC 3 cut(s) 242, 422, 710
MaeI CTAG 1 cut(s) 621
MaeIII GTNAC 2 cut(s) 205, 906
MalI GATC 3 cut(s) 570, 663, 817
MboI GATC 3 cut(s) 568, 661, 815
MboII GAAGA 4 cut(s) 8, 40, 217, 616
MluCI AATT 3 cut(s) 525, 822, 921
MlyI GAGTC 7 cut(s) 205, 286, 307, 325, 346, 736, 851
MmeI TCCRAC 5 cut(s) 124, 224, 392, 413, 641
MnlI CCTC 4 cut(s) 93, 409, 500, 629
MspI CCGG 1 cut(s) 565
MspR9I CCNGG 2 cut(s) 566, 810
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 1 cut(s) 810
MwoI GCNNNNNNNGC 1 cut(s) 581
NciI CCSGG 1 cut(s) 566
NdeII GATC 3 cut(s) 568, 661, 815
NlaIII CATG 3 cut(s) 128, 259, 880
NmuCI GTSAC 1 cut(s) 906
NspI RCATGY 1 cut(s) 880
PaeI GCATGC 1 cut(s) 880
PaeR7I CTCGAG 1 cut(s) 712
PagI TCATGA 1 cut(s) 124
PctI GAATGC 1 cut(s) 22
PfeI GAWTC 3 cut(s) 121, 173, 178
PflMI CCANNNNNTGG 1 cut(s) 671
PfoI TCCNGGA 1 cut(s) 564
PkrI GCNGC 2 cut(s) 856, 919
PleI GAGTC 7 cut(s) 205, 286, 307, 325, 346, 736, 850
PpsI GAGTC 7 cut(s) 205, 286, 307, 325, 346, 736, 850
PsiI TTATAA 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 808
PspFI CCCAGC 3 cut(s) 165, 229, 610
PspGI CCWGG 1 cut(s) 808
PspPI GGNCC 1 cut(s) 731
PspXI VCTCGAGB 1 cut(s) 712
PstI CTGCAG 1 cut(s) 477
PstNI CAGNNNCTG 1 cut(s) 467
RsaI GTAC 1 cut(s) 718
RsaNI GTAC 1 cut(s) 717
SatI GCNGC 2 cut(s) 855, 918
Sau3AI GATC 3 cut(s) 568, 661, 815
Sau96I GGNCC 1 cut(s) 731
SbfI CCTGCAGG 1 cut(s) 477
SchI GAGTC 7 cut(s) 205, 286, 307, 325, 346, 736, 851
ScrFI CCNGG 2 cut(s) 566, 810
SdaI CCTGCAGG 1 cut(s) 477
SfaNI GCATC 3 cut(s) 242, 422, 710
SfcI CTRYAG 2 cut(s) 473, 625
Sfr274I CTCGAG 1 cut(s) 712
SinI GGWCC 1 cut(s) 731
SlaI CTCGAG 1 cut(s) 712
SmlI CTYRAG 1 cut(s) 712
SmoI CTYRAG 1 cut(s) 712
SphI GCATGC 1 cut(s) 880
Sse8387I CCTGCAGG 1 cut(s) 477
Sse9I AATT 3 cut(s) 525, 822, 921
SsiI CCGC 3 cut(s) 308, 326, 794
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 2 cut(s) 564, 808
TaaI ACNGT 3 cut(s) 205, 518, 731
TaqI TCGA 2 cut(s) 176, 713
TasI AATT 3 cut(s) 525, 822, 921
TatI WGTACW 1 cut(s) 716
TfiI GAWTC 3 cut(s) 121, 173, 178
TscAI CASTG 2 cut(s) 159, 664
TseFI GTSAC 1 cut(s) 906
TseI GCWGC 2 cut(s) 854, 917
Tsp45I GTSAC 1 cut(s) 906
TspDTI ATGAA 2 cut(s) 113, 141
TspRI CASTG 2 cut(s) 159, 664
Van91I CCANNNNNTGG 1 cut(s) 671
VpaK11BI GGWCC 1 cut(s) 731
XceI RCATGY 1 cut(s) 880
XcmI CCANNNNNNNNNTGG 1 cut(s) 898
XhoI CTCGAG 1 cut(s) 712
XmiI GTMKAC 1 cut(s) 158
XspI CTAG 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.