Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008732.1

Orthogroup ID

OG0009347

Physical Location & Seq

Genomic Coordinates Reverse (-)

5097 .. 6356

Gene Structure 1260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008732.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atggaaaacggagacaaccacggcggcgagtcatcgtacccaaatgccgaccagaccgagactgagactcagaagaagtcaacaatggaatcggaggctttggcaaagggactgtcttccaccctcgccaccatcattaaagacttcgattccaaagctcagcagaccttcaccagccaagaccagctctctcaagccctcgatcgcctcacccgcgagcttgataagttgttagagggtgctccgctgccgttcataatgcaacacgcggcgaagataacggcggttaggaagagggttttgtctctcaactccgttttgaagaatgttcaacgccgtcttgataatatagaccgcatcttaaccctgggcgccccacatcaaaaccaacatgataagacatccaccgaacattcagggctgcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Snapin_Pallidin

Protein Analysis

142

Amino Acids

15.74

Weight (kDa)

6.19

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79070 AT1G79070
fragaria_vesca	FvH4_3g16000 FvH4_3g16000 FvH4_3g16000
malus_domestica	MD05G1216100.v1.1
prunus_persica	Prupe.4G143100_v2.0.a1 Prupe.4G143100_v2.0.a1
pyrus_communis	pycom10g17130
rosa_chinensis	RchiOBHm_Chr5g0026941
rosa_laevigata	RLG00000032971
rosa_multiflora	Rmu_sc0008732.1_g000002
rosa_roxburghii	Rroxscaffold_1G00052530
rosa_rugosa	Rorug05G0096000 Rorug05G0096100 Rorug05G0096200 Rorug05G0096300
rosa_samantha	Rh5AG189700 Rh5BG187200 Rh5CG206900 Rh5DG188900
rosa_wichuraiana	Rw5G017260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	371
AccII	CGCG	2 cut(s)	216, 269
AciI	CCGC	6 cut(s)	24, 214, 245, 269, 284, 355
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	322, 332
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	3 cut(s)	158, 187, 220
AluI	AGCT	3 cut(s)	158, 187, 220
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	4 cut(s)	6, 53, 59, 309
ApeKI	GCWGC	2 cut(s)	247, 421
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspLEI	GCGC	1 cut(s)	374
AsuHPI	GGTGA	2 cut(s)	163, 202
BanI	GGYRCC	1 cut(s)	371
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	234, 408
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	4 cut(s)	37, 235, 297, 321
BciT130I	CCWGG	1 cut(s)	368
BcoDI	GTCTC	4 cut(s)	6, 53, 59, 309
BfmI	CTRYAG	1 cut(s)	422
BfoI	RGCGCY	1 cut(s)	375
BisI	GCNGC	4 cut(s)	25, 248, 270, 422
BlpI	GCTNAGC	1 cut(s)	159
BlsI	GCNGC	4 cut(s)	26, 249, 271, 423
Bme1390I	CCNGG	1 cut(s)	368
BmiI	GGNNCC	1 cut(s)	373
BmrFI	CCNGG	1 cut(s)	368
BmsI	GCATC	1 cut(s)	366
BpiI	GAAGAC	1 cut(s)	108
Bpu1102I	GCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	3 cut(s)	19, 366, 367
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	3 cut(s)	19, 366, 367
BseGI	GGATG	1 cut(s)	401
BseMII	CTCAG	3 cut(s)	54, 83, 173
BseXI	GCAGC	2 cut(s)	234, 408
Bsh1236I	CGCG	2 cut(s)	216, 269
Bsh1285I	CGRYCG	1 cut(s)	205
BshNI	GGYRCC	1 cut(s)	371
BsiEI	CGRYCG	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	123
BsmAI	GTCTC	4 cut(s)	6, 53, 59, 309
BsmFI	GGGAC	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	202
Bsp1720I	GCTNAGC	1 cut(s)	159
BspACI	CCGC	6 cut(s)	24, 214, 245, 269, 284, 355
BspCNI	CTCAG	3 cut(s)	55, 82, 172
BspFNI	CGCG	2 cut(s)	216, 269
BspLI	GGNNCC	1 cut(s)	373
BspMAI	CTGCAG	1 cut(s)	426
BspT107I	GGYRCC	1 cut(s)	371
BssECI	CCNNGG	3 cut(s)	19, 366, 367
BssMI	GATC	1 cut(s)	202
BssNI	GRCGYC	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	114
Bst6I	CTCTTC	1 cut(s)	287
BstACI	GRCGYC	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	3 cut(s)	63, 69, 159
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	401
BstFNI	CGCG	2 cut(s)	216, 269
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	4 cut(s)	6, 53, 59, 309
BstMBI	GATC	1 cut(s)	202
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstNI	CCWGG	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	1 cut(s)	422
BstUI	CGCG	2 cut(s)	216, 269
BstV1I	GCAGC	2 cut(s)	234, 408
BstV2I	GAAGAC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	401
Cac8I	GCNNGC	1 cut(s)	218
CfoI	GCGC	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	1 cut(s)	392
CviJI	RGCY	7 cut(s)	98, 158, 177, 187, 197, 220, 421
CviKI_1	RGCY	7 cut(s)	98, 158, 177, 187, 197, 220, 421
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	3 cut(s)	63, 69, 159
DinI	GGCGCC	1 cut(s)	373
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	366
EgeI	GGCGCC	1 cut(s)	373
EheI	GGCGCC	1 cut(s)	373
FaeI	CATG	1 cut(s)	395
FaiI	YATR	3 cut(s)	257, 350, 393
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	1 cut(s)	391
FauI	CCCGC	1 cut(s)	221
Fnu4HI	GCNGC	4 cut(s)	25, 248, 270, 422
FokI	GGATG	1 cut(s)	388
Fsp4HI	GCNGC	4 cut(s)	25, 248, 270, 422
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	4 cut(s)	25, 248, 270, 422
HaeII	RGCGCY	1 cut(s)	375
HhaI	GCGC	1 cut(s)	374
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	1 cut(s)	395
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HinfI	GANTC	4 cut(s)	29, 67, 89, 149
HphI	GGTGA	2 cut(s)	163, 202
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	2 cut(s)	72, 94
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4V	TGCA	2 cut(s)	262, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	3 cut(s)	63, 69, 159
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	1 cut(s)	395
HspAI	GCGC	1 cut(s)	372
KasI	GGCGCC	1 cut(s)	371
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	6 cut(s)	65, 187, 197, 353, 380, 402
Lsp1109I	GCAGC	2 cut(s)	234, 408
LweI	GCATC	1 cut(s)	366
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	5 cut(s)	85, 108, 286, 304, 334
MhlI	GDGCHC	1 cut(s)	244
Mly113I	GGCGCC	1 cut(s)	372
MlyI	GAGTC	2 cut(s)	38, 61
MnlI	CCTC	6 cut(s)	88, 134, 209, 218, 229, 288
MseI	TTAA	2 cut(s)	138, 362
MspA1I	CMGCKG	1 cut(s)	247
MspR9I	CCNGG	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	368
MvnI	CGCG	2 cut(s)	216, 269
MwoI	GCNNNNNNNGC	1 cut(s)	213
NarI	GGCGCC	1 cut(s)	372
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	1 cut(s)	395
NlaIV	GGNNCC	1 cut(s)	373
PasI	CCCWGGG	1 cut(s)	367
PfeI	GAWTC	2 cut(s)	89, 149
PkrI	GCNGC	4 cut(s)	26, 249, 271, 423
Ple19I	CGATCG	1 cut(s)	205
PleI	GAGTC	2 cut(s)	37, 61
PluTI	GGCGCC	1 cut(s)	375
PpsI	GAGTC	2 cut(s)	37, 61
Psp6I	CCWGG	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	1 cut(s)	373
PstI	CTGCAG	1 cut(s)	426
PvuI	CGATCG	1 cut(s)	205
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	138, 362
SatI	GCNGC	4 cut(s)	25, 248, 270, 422
Sau3AI	GATC	1 cut(s)	202
SchI	GAGTC	2 cut(s)	38, 61
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	4 cut(s)	160, 170, 189, 222
SfaNI	GCATC	1 cut(s)	366
SfcI	CTRYAG	1 cut(s)	422
SfoI	GGCGCC	1 cut(s)	373
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
SsiI	CCGC	6 cut(s)	24, 214, 245, 269, 284, 355
SspDI	GGCGCC	1 cut(s)	371
StyD4I	CCNGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	114
TaqI	TCGA	2 cut(s)	147, 201
TaqII	GACCGA	1 cut(s)	71
TauI	GCSGC	2 cut(s)	27, 272
TfiI	GAWTC	2 cut(s)	89, 149
Tru1I	TTAA	2 cut(s)	138, 362
Tru9I	TTAA	2 cut(s)	138, 362
TseI	GCWGC	2 cut(s)	247, 421
TspDTI	ATGAA	1 cut(s)	244
TspGWI	ACGGA	2 cut(s)	24, 304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.