Rh5BG187200

Snapin/Pallidin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0009347
Physical Location & Seq
Forward (+)
20532691 .. 20535286
2596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG187200.1

Sequence Viewer

Length: 414 bp
ATGGAAAACGGAGGCAACCACGGTGGCGAGTCATCGTACCCAAATGCCGACCAGACCGAGATTCAGAAGAAGACAACATTAGAATCGGAGGCTTTGGCAAAGGGACTGTCTTCCACCCTCGCCACCATCATTAAAGACTTCGATTCCAAAGCTCAGCAAACCTTCACCAGCCAAGACCAGCTCTCTCAAGCCCTCGATCGCCTCACCCGCGAGCTTGATAAGTTGTTAGAGGATGCTCCGTTGCCGTTCATAATGCAACACGCGGCGAAGATAACGGCGGTTAGGAAGAGGGTTTTGTCTCTCAACTCCGTTTTGAAGAATGTTCAACGCCGTCTTGATAATATAGACCGCATCTTAACTCTGGGCGCCCCACATCAAAACCAACATGGTATTTTGGTTTCTCTTTTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Snapin_Pallidin

Protein Analysis

137

Amino Acids

15.13

Weight (kDa)

6.91

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snapin_Pallidin PF14712 30 - 115 2.3e-22 Snapin/Pallidin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 365
AccII CGCG 2 cut(s) 210, 263
AciI CCGC 4 cut(s) 208, 263, 278, 349
AcyI GRCGYC 1 cut(s) 366
AfaI GTAC 1 cut(s) 38
AgsI TTSAA 2 cut(s) 316, 326
AluBI AGCT 3 cut(s) 152, 181, 214
AluI AGCT 3 cut(s) 152, 181, 214
Alw26I GTCTC 1 cut(s) 303
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
AspLEI GCGC 1 cut(s) 368
AsuHPI GGTGA 2 cut(s) 157, 196
BanI GGYRCC 1 cut(s) 365
BbsI GAAGAC 2 cut(s) 77, 102
BccI CCATC 1 cut(s) 134
BceAI ACGGC 3 cut(s) 229, 291, 315
BcoDI GTCTC 1 cut(s) 303
BfoI RGCGCY 1 cut(s) 369
BisI GCNGC 1 cut(s) 264
BlpI GCTNAGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 367
BmsI GCATC 2 cut(s) 223, 360
BpiI GAAGAC 2 cut(s) 77, 102
Bpu1102I GCTNAGC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 1 cut(s) 238
BseMII CTCAG 1 cut(s) 167
Bsh1236I CGCG 2 cut(s) 210, 263
Bsh1285I CGRYCG 1 cut(s) 199
BshNI GGYRCC 1 cut(s) 365
BsiEI CGRYCG 1 cut(s) 199
BslFI GGGAC 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 303
BsmFI GGGAC 1 cut(s) 117
Bsp143I GATC 1 cut(s) 196
Bsp1720I GCTNAGC 1 cut(s) 153
BspACI CCGC 4 cut(s) 208, 263, 278, 349
BspCNI CTCAG 1 cut(s) 166
BspFNI CGCG 2 cut(s) 210, 263
BspLI GGNNCC 1 cut(s) 367
BspT107I GGYRCC 1 cut(s) 365
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 1 cut(s) 196
BssNI GRCGYC 1 cut(s) 366
Bst4CI ACNGT 2 cut(s) 23, 108
Bst6I CTCTTC 1 cut(s) 281
BstACI GRCGYC 1 cut(s) 366
BstC8I GCNNGC 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 153
BstDSI CCRYGG 1 cut(s) 19
BstF5I GGATG 1 cut(s) 238
BstFNI CGCG 2 cut(s) 210, 263
BstH2I RGCGCY 1 cut(s) 369
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 1 cut(s) 196
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstUI CGCG 2 cut(s) 210, 263
BstV2I GAAGAC 2 cut(s) 77, 102
BtgI CCRYGG 1 cut(s) 19
BtsCI GGATG 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 212
CfoI GCGC 1 cut(s) 368
Csp6I GTAC 1 cut(s) 37
CspCI CAANNNNNGTGG 2 cut(s) 4, 39
CviAII CATG 1 cut(s) 386
CviJI RGCY 6 cut(s) 92, 152, 171, 181, 191, 214
CviKI_1 RGCY 6 cut(s) 92, 152, 171, 181, 191, 214
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 1 cut(s) 153
DinI GGCGCC 1 cut(s) 367
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
EgeI GGCGCC 1 cut(s) 367
EheI GGCGCC 1 cut(s) 367
FaeI CATG 1 cut(s) 389
FaiI YATR 3 cut(s) 251, 344, 387
FaqI GGGAC 1 cut(s) 117
FatI CATG 1 cut(s) 385
FauI CCCGC 1 cut(s) 215
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 264
GlaI GCGC 1 cut(s) 367
GluI GCNGC 1 cut(s) 264
HaeII RGCGCY 1 cut(s) 369
HhaI GCGC 1 cut(s) 368
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 1 cut(s) 389
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HinfI GANTC 4 cut(s) 29, 61, 83, 143
HphI GGTGA 2 cut(s) 157, 196
Hpy188I TCNGA 2 cut(s) 66, 88
Hpy188III TCNNGA 1 cut(s) 335
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 2 cut(s) 23, 108
HpyCH4V TGCA 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
HpyF3I CTNAG 1 cut(s) 153
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 1 cut(s) 389
HspAI GCGC 1 cut(s) 366
KasI GGCGCC 1 cut(s) 365
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 4 cut(s) 65, 181, 191, 347
LweI GCATC 2 cut(s) 223, 360
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 6 cut(s) 79, 82, 102, 280, 298, 328
Mly113I GGCGCC 1 cut(s) 366
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 7 cut(s) 5, 82, 128, 203, 212, 223, 282
MseI TTAA 2 cut(s) 132, 356
MvnI CGCG 2 cut(s) 210, 263
MwoI GCNNNNNNNGC 1 cut(s) 207
NarI GGCGCC 1 cut(s) 366
NdeII GATC 1 cut(s) 196
NlaIII CATG 1 cut(s) 389
NlaIV GGNNCC 1 cut(s) 367
PfeI GAWTC 3 cut(s) 61, 83, 143
PkrI GCNGC 1 cut(s) 265
Ple19I CGATCG 1 cut(s) 199
PleI GAGTC 1 cut(s) 37
PluTI GGCGCC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 367
PvuI CGATCG 1 cut(s) 199
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SaqAI TTAA 2 cut(s) 132, 356
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 1 cut(s) 196
SchI GAGTC 1 cut(s) 38
SetI ASST 4 cut(s) 154, 164, 183, 216
SfaNI GCATC 2 cut(s) 223, 360
SfoI GGCGCC 1 cut(s) 367
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
SsiI CCGC 4 cut(s) 208, 263, 278, 349
SspDI GGCGCC 1 cut(s) 365
TaaI ACNGT 2 cut(s) 23, 108
TaqI TCGA 2 cut(s) 141, 195
TaqII GACCGA 1 cut(s) 71
TauI GCSGC 1 cut(s) 266
TfiI GAWTC 3 cut(s) 61, 83, 143
Tru1I TTAA 2 cut(s) 132, 356
Tru9I TTAA 2 cut(s) 132, 356
TspDTI ATGAA 1 cut(s) 238
TspGWI ACGGA 3 cut(s) 24, 228, 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.