FvH4_3g16000

Snapin/Pallidin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009347
Physical Location & Seq
Forward (+)
10069783 .. 10072006
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g16000.t1

Sequence Viewer

Length: 429 bp
ATGGAAAACGGAGACAACCACGGCGAGGCATCGTACCCAAATGCCGACCAGACCAAAATCGAGAACAAGAAGACAACAACAGCGGAATCATCGGAGGCTTTGGCAAAGGGACTGTCTTCGACCCTCGCCGCCATCATTAAAGACTTCGATTCCAAAGCCCAGCAGACCTTCACCAGCCAAGACCAGCTCTCTCAAGCCCTCGATCGCCTCACCCGCGAGCTGGATAAGTTGTTGGAAGATGCTCCGATGCCGTTTATAATGCAACACGCGGCGAAGATCACGGCGGTTAGGAAGAGGGTTTTGTCTCTTAACTCGGTTTTGAAGAATGTTCAACGCCGTCTTGACAATATAGACCGCATGTTAACTGTTGGAGTTCCACATCCTAATCAACATGATAAGACGAACACTGAACATTCAGGACTGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Snapin_Pallidin

Protein Analysis

143

Amino Acids

15.79

Weight (kDa)

6.59

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snapin_Pallidin PF14712 32 - 117 4.5e-23 Snapin/Pallidin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
AccII CGCG 2 cut(s) 216, 269
AciI CCGC 6 cut(s) 83, 129, 214, 269, 284, 355
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 2 cut(s) 25, 220
AgsI TTSAA 2 cut(s) 322, 332
AluBI AGCT 2 cut(s) 187, 220
AluI AGCT 2 cut(s) 187, 220
Alw26I GTCTC 2 cut(s) 6, 309
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AsuHPI GGTGA 2 cut(s) 163, 202
BbsI GAAGAC 2 cut(s) 77, 108
BccI CCATC 1 cut(s) 140
BceAI ACGGC 4 cut(s) 37, 235, 297, 321
BcoDI GTCTC 2 cut(s) 6, 309
BisI GCNGC 2 cut(s) 129, 270
BlsI GCNGC 2 cut(s) 130, 271
BmsI GCATC 3 cut(s) 38, 229, 237
BpiI GAAGAC 2 cut(s) 77, 108
BpuEI CTTGAG 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 19
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 220
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 1 cut(s) 379
BseLI CCNNNNNNNGG 2 cut(s) 25, 220
BseYI CCCAGC 1 cut(s) 159
Bsh1236I CGCG 2 cut(s) 216, 269
Bsh1285I CGRYCG 1 cut(s) 205
BsiEI CGRYCG 1 cut(s) 205
BslFI GGGAC 1 cut(s) 123
BslI CCNNNNNNNGG 2 cut(s) 25, 220
BsmAI GTCTC 2 cut(s) 6, 309
BsmFI GGGAC 1 cut(s) 123
Bsp143I GATC 2 cut(s) 202, 276
BspACI CCGC 6 cut(s) 83, 129, 214, 269, 284, 355
BspFNI CGCG 2 cut(s) 216, 269
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 2 cut(s) 202, 276
Bst4CI ACNGT 2 cut(s) 114, 367
Bst6I CTCTTC 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 218
BstDSI CCRYGG 1 cut(s) 19
BstF5I GGATG 1 cut(s) 379
BstFNI CGCG 2 cut(s) 216, 269
BstKTI GATC 2 cut(s) 205, 279
BstMAI GTCTC 2 cut(s) 6, 309
BstMBI GATC 2 cut(s) 202, 276
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstNSI RCATGY 1 cut(s) 361
BstUI CGCG 2 cut(s) 216, 269
BstV2I GAAGAC 2 cut(s) 77, 108
BtgI CCRYGG 1 cut(s) 19
BtsCI GGATG 1 cut(s) 379
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 34
CviAII CATG 2 cut(s) 358, 392
CviJI RGCY 6 cut(s) 98, 158, 177, 187, 197, 220
CviKI_1 RGCY 6 cut(s) 98, 158, 177, 187, 197, 220
CviQI GTAC 1 cut(s) 34
DpnI GATC 2 cut(s) 204, 278
DpnII GATC 2 cut(s) 202, 276
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
FaeI CATG 2 cut(s) 361, 395
FaiI YATR 4 cut(s) 257, 350, 359, 393
FaqI GGGAC 1 cut(s) 123
FatI CATG 2 cut(s) 357, 391
FauI CCCGC 1 cut(s) 221
Fnu4HI GCNGC 2 cut(s) 129, 270
FokI GGATG 1 cut(s) 366
Fsp4HI GCNGC 2 cut(s) 129, 270
GluI GCNGC 2 cut(s) 129, 270
GsaI CCCAGC 1 cut(s) 163
Hin1II CATG 2 cut(s) 361, 395
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HinfI GANTC 2 cut(s) 86, 149
HpaI GTTAAC 1 cut(s) 363
HphI GGTGA 2 cut(s) 163, 202
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 2 cut(s) 94, 246
Hpy188III TCNNGA 3 cut(s) 61, 341, 417
Hpy8I GTNNAC 1 cut(s) 363
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 2 cut(s) 114, 367
HpyCH4V TGCA 2 cut(s) 262, 424
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
Hsp92II CATG 2 cut(s) 361, 395
KspAI GTTAAC 1 cut(s) 363
Kzo9I GATC 2 cut(s) 202, 276
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 6 cut(s) 62, 173, 187, 197, 206, 402
LweI GCATC 3 cut(s) 38, 229, 237
MalI GATC 2 cut(s) 204, 278
MboI GATC 2 cut(s) 202, 276
MboII GAAGA 6 cut(s) 82, 108, 248, 286, 304, 334
MmeI TCCRAC 2 cut(s) 213, 349
MnlI CCTC 6 cut(s) 19, 88, 134, 209, 218, 288
MseI TTAA 4 cut(s) 138, 309, 362, 427
MspA1I CMGCKG 1 cut(s) 83
MvnI CGCG 2 cut(s) 216, 269
MwoI GCNNNNNNNGC 1 cut(s) 213
NdeII GATC 2 cut(s) 202, 276
NlaIII CATG 2 cut(s) 361, 395
NspI RCATGY 1 cut(s) 361
PfeI GAWTC 2 cut(s) 86, 149
PkrI GCNGC 2 cut(s) 130, 271
Ple19I CGATCG 1 cut(s) 205
PsiI TTATAA 1 cut(s) 257
PspFI CCCAGC 1 cut(s) 159
PvuI CGATCG 1 cut(s) 205
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SaqAI TTAA 4 cut(s) 138, 309, 362, 427
SatI GCNGC 2 cut(s) 129, 270
Sau3AI GATC 2 cut(s) 202, 276
SetI ASST 3 cut(s) 170, 189, 222
SfaNI GCATC 3 cut(s) 38, 229, 237
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
SsiI CCGC 6 cut(s) 83, 129, 214, 269, 284, 355
TaaI ACNGT 2 cut(s) 114, 367
TaqI TCGA 4 cut(s) 60, 119, 147, 201
TauI GCSGC 2 cut(s) 131, 272
TfiI GAWTC 2 cut(s) 86, 149
Tru1I TTAA 4 cut(s) 138, 309, 362, 427
Tru9I TTAA 4 cut(s) 138, 309, 362, 427
TscAI CASTG 1 cut(s) 412
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 1 cut(s) 412
XceI RCATGY 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.