Rorug05G0096300

Snapin/Pallidin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009347
Physical Location & Seq
Forward (+)
8540107 .. 8540865
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0096300.1

Sequence Viewer

Length: 759 bp
ATGGGAGGTAGGGATAACTGTGCTATTTGTTTGGAGAACGTTTCTCACTTTGATAATGAAACTGCTACTTGCTTGCTGCCCTGCTTCCACTTATTTCATACAGAATGCATAACGCCGTGGCTGGATACTAATAACTTCTGTCCCCTGTGCCGTCAGTCGGTGGATGTTGCGGAGGTGGTCGACGAGTCATCAAGACCCTCAAGCCCCAGACGAGACGAAAACAACCAACACAATGATATGCATCGGCCTGTCGCGGGGGAGCCATCATTACCCTCAAGTTCTCTACAAGAGTACTGGTGGAACTACCCACCAAACTCAAGTCCGCAATTGGCCTTTGTGGGCGAGCCATTAGTACCGTTAGCCCACCCGTCATGCGGGTGGGCCAGGTACGAGAACCACCCACAAATCCCAAGTCTGCCGTGGCCTGTTGTGGCCGAGCCACCGAGACCGTTACCCCCCACACATGGCCAGTGGGTCATAGTCGAAAACCAACCGCAAACCTCAAGCCTACAATTGCCTGTCCCCGCTGGGCCATGGACACCCATTTTTTCGCCGCCGCCACCTTCAAGACCTCGAGGGAATGATAATCTAATGATCATGTTCACTGTGTGTTTAGTCTTTTTGTGCTTGTGTCTACTTATGCCGCCAATGCAGTCGCTTGGGGGGTTCTTTGATGGAGTGAAGAAAAATGTTATGGTTGTTACAGTTGTTTTGGTGATCATCTTTTCACTAACTGGAGGCAGTCTATATATAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Snapin_Pallidin

Protein Analysis

252

Amino Acids

27.95

Weight (kDa)

5.24

Isoelectric Point (pI)

63.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 5 - 51 7.2e-12 Ring finger domain
zf-rbx1 PF12678 5 - 51 9.9e-07 RING-H2 zinc finger domain
zf-RING_11 PF17123 6 - 37 1e-05 RING-like zinc finger
zf-C3HC4 PF00097 7 - 50 2.8e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 7 - 50 8.5e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 573
AccI GTMKAC 2 cut(s) 180, 634
AccII CGCG 1 cut(s) 254
AciI CCGC 9 cut(s) 170, 254, 323, 375, 494, 525, 554, 557, 644
AclI AACGTT 1 cut(s) 39
AcoI YGGCCR 2 cut(s) 432, 466
AdeI CACNNNGTG 1 cut(s) 609
AfaI GTAC 3 cut(s) 293, 354, 389
AfiI CCNNNNNNNGG 4 cut(s) 157, 254, 374, 464
AgsI TTSAA 1 cut(s) 567
AjnI CCWGG 1 cut(s) 383
Alw26I GTCTC 2 cut(s) 207, 439
Ama87I CYCGRG 1 cut(s) 573
AoxI GGCC 7 cut(s) 245, 330, 381, 422, 432, 466, 530
ApeKI GCWGC 1 cut(s) 76
ArsI GACNNNNNNTTYG 2 cut(s) 397, 429
AspS9I GGNCC 2 cut(s) 381, 530
AsuHPI GGTGA 1 cut(s) 727
AvaI CYCGRG 1 cut(s) 573
BalI TGGCCA 1 cut(s) 468
BbvI GCAGC 1 cut(s) 63
BccI CCATC 2 cut(s) 271, 668
BceAI ACGGC 3 cut(s) 100, 135, 403
BciT130I CCWGG 1 cut(s) 385
BciVI GTATCC 1 cut(s) 118
BclI TGATCA 2 cut(s) 594, 717
BcoDI GTCTC 2 cut(s) 207, 439
BfuI GTATCC 1 cut(s) 118
BisI GCNGC 4 cut(s) 77, 554, 557, 644
BlsI GCNGC 4 cut(s) 78, 555, 558, 645
BmcAI AGTACT 1 cut(s) 293
Bme1390I CCNGG 1 cut(s) 385
BmeT110I CYCGRG 1 cut(s) 573
BmgT120I GGNCC 2 cut(s) 381, 530
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 385
BmsI GCATC 1 cut(s) 250
BpmI CTGGAG 1 cut(s) 756
BpuEI CTTGAG 4 cut(s) 184, 259, 301, 487
BsaBI GATNNNNATC 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 439
BsaJI CCNNGG 3 cut(s) 116, 419, 533
Bsc4I CCNNNNNNNGG 4 cut(s) 157, 254, 374, 464
Bse1I ACTGG 3 cut(s) 299, 469, 739
Bse8I GATNNNNATC 1 cut(s) 240
BseBI CCWGG 1 cut(s) 385
BseDI CCNNGG 3 cut(s) 116, 419, 533
BseGI GGATG 1 cut(s) 169
BseJI GATNNNNATC 1 cut(s) 240
BseLI CCNNNNNNNGG 4 cut(s) 157, 254, 374, 464
BseNI ACTGG 3 cut(s) 299, 469, 739
BseXI GCAGC 1 cut(s) 63
BseYI CCCAGC 1 cut(s) 527
Bsh1236I CGCG 1 cut(s) 254
BshFI GGCC 7 cut(s) 247, 332, 383, 424, 434, 468, 532
BsiHKCI CYCGRG 1 cut(s) 573
BslFI GGGAC 2 cut(s) 126, 506
BslI CCNNNNNNNGG 4 cut(s) 157, 254, 374, 464
BsmAI GTCTC 2 cut(s) 207, 439
BsmBI CGTCTC 1 cut(s) 207
BsmFI GGGAC 2 cut(s) 126, 506
BsmI GAATGC 1 cut(s) 110
BsnI GGCC 7 cut(s) 247, 332, 383, 424, 434, 468, 532
Bso31I GGTCTC 1 cut(s) 439
BsoBI CYCGRG 1 cut(s) 573
Bsp143I GATC 2 cut(s) 594, 717
Bsp19I CCATGG 1 cut(s) 533
BspACI CCGC 9 cut(s) 170, 254, 323, 375, 494, 525, 554, 557, 644
BspANI GGCC 7 cut(s) 247, 332, 383, 424, 434, 468, 532
BspFNI CGCG 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 261
BspTNI GGTCTC 1 cut(s) 439
BsrI ACTGG 3 cut(s) 299, 469, 739
BssECI CCNNGG 3 cut(s) 116, 419, 533
BssMI GATC 2 cut(s) 594, 717
BssT1I CCWWGG 1 cut(s) 533
Bst2UI CCWGG 1 cut(s) 385
Bst4CI ACNGT 5 cut(s) 20, 357, 450, 607, 706
BstC8I GCNNGC 2 cut(s) 74, 344
BstDSI CCRYGG 3 cut(s) 116, 419, 533
BstF5I GGATG 1 cut(s) 169
BstFNI CGCG 1 cut(s) 254
BstKTI GATC 2 cut(s) 597, 720
BstMAI GTCTC 2 cut(s) 207, 439
BstMBI GATC 2 cut(s) 594, 717
BstMWI GCNNNNNNNGC 1 cut(s) 649
BstNI CCWGG 1 cut(s) 385
BstSCI CCNGG 1 cut(s) 383
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 63
BsuI GTATCC 1 cut(s) 118
BsuRI GGCC 7 cut(s) 247, 332, 383, 424, 434, 468, 532
BtgI CCRYGG 3 cut(s) 116, 419, 533
BtsCI GGATG 1 cut(s) 169
BtsIMutI CAGTG 2 cut(s) 476, 603
Cac8I GCNNGC 2 cut(s) 74, 344
Cfr13I GGNCC 2 cut(s) 381, 530
Csp6I GTAC 3 cut(s) 292, 353, 388
CviAII CATG 4 cut(s) 372, 464, 534, 598
CviQI GTAC 3 cut(s) 292, 353, 388
DpnI GATC 2 cut(s) 596, 719
DpnII GATC 2 cut(s) 594, 717
DraIII CACNNNGTG 1 cut(s) 609
EaeI YGGCCR 2 cut(s) 432, 466
Eco130I CCWWGG 1 cut(s) 533
Eco31I GGTCTC 1 cut(s) 439
Eco88I CYCGRG 1 cut(s) 573
EcoRII CCWGG 1 cut(s) 383
EcoT14I CCWWGG 1 cut(s) 533
EcoT22I ATGCAT 2 cut(s) 110, 243
ErhI CCWWGG 1 cut(s) 533
Esp3I CGTCTC 1 cut(s) 207
FaeI CATG 4 cut(s) 375, 467, 537, 601
FaqI GGGAC 2 cut(s) 126, 506
FatI CATG 4 cut(s) 371, 463, 533, 597
FauI CCCGC 3 cut(s) 247, 368, 532
FbaI TGATCA 2 cut(s) 594, 717
FblI GTMKAC 2 cut(s) 180, 634
Fnu4HI GCNGC 4 cut(s) 77, 554, 557, 644
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 4 cut(s) 77, 554, 557, 644
GluI GCNGC 4 cut(s) 77, 554, 557, 644
GsaI CCCAGC 1 cut(s) 531
GsuI CTGGAG 1 cut(s) 756
HaeIII GGCC 7 cut(s) 247, 332, 383, 424, 434, 468, 532
Hin1II CATG 4 cut(s) 375, 467, 537, 601
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 1 cut(s) 185
HphI GGTGA 1 cut(s) 727
Hpy166II GTNNAC 3 cut(s) 181, 603, 635
Hpy188III TCNNGA 2 cut(s) 192, 567
Hpy8I GTNNAC 3 cut(s) 181, 603, 635
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 573
HpyCH4III ACNGT 5 cut(s) 20, 357, 450, 607, 706
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 3 cut(s) 108, 241, 652
HpyF10VI GCNNNNNNNGC 1 cut(s) 649
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 4 cut(s) 375, 467, 537, 601
Ksp22I TGATCA 2 cut(s) 594, 717
Kzo9I GATC 2 cut(s) 594, 717
LmnI GCTCC 1 cut(s) 259
Lsp1109I GCAGC 1 cut(s) 63
LweI GCATC 1 cut(s) 250
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 450, 700
MalI GATC 2 cut(s) 596, 719
MboI GATC 2 cut(s) 594, 717
MboII GAAGA 1 cut(s) 694
MfeI CAATTG 2 cut(s) 326, 512
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 2 cut(s) 326, 512
MluNI TGGCCA 1 cut(s) 468
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 7 cut(s) 166, 208, 283, 511, 569, 582, 731
Mox20I TGGCCA 1 cut(s) 468
Mph1103I ATGCAT 2 cut(s) 110, 243
MscI TGGCCA 1 cut(s) 468
MslI CAYNNNNRTG 1 cut(s) 376
Msp20I TGGCCA 1 cut(s) 468
MspA1I CMGCKG 1 cut(s) 527
MspR9I CCNGG 1 cut(s) 385
MunI CAATTG 2 cut(s) 326, 512
Mva1269I GAATGC 1 cut(s) 110
MvaI CCWGG 1 cut(s) 385
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 1 cut(s) 649
NcoI CCATGG 1 cut(s) 533
NdeII GATC 2 cut(s) 594, 717
NlaIII CATG 4 cut(s) 375, 467, 537, 601
NlaIV GGNNCC 1 cut(s) 261
NmeAIII GCCGAG 1 cut(s) 460
NsiI ATGCAT 2 cut(s) 110, 243
PaeR7I CTCGAG 1 cut(s) 573
PctI GAATGC 1 cut(s) 110
PkrI GCNGC 4 cut(s) 78, 555, 558, 645
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp1406I AACGTT 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 383
PspFI CCCAGC 1 cut(s) 527
PspGI CCWGG 1 cut(s) 383
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 2 cut(s) 381, 530
PspXI VCTCGAGB 1 cut(s) 573
RsaI GTAC 3 cut(s) 293, 354, 389
RsaNI GTAC 3 cut(s) 292, 353, 388
RseI CAYNNNNRTG 1 cut(s) 376
SalI GTCGAC 1 cut(s) 179
SatI GCNGC 4 cut(s) 77, 554, 557, 644
Sau3AI GATC 2 cut(s) 594, 717
Sau96I GGNCC 2 cut(s) 381, 530
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 385
SetI ASST 7 cut(s) 10, 42, 177, 389, 503, 565, 574
SfaNI GCATC 1 cut(s) 250
Sfr274I CTCGAG 1 cut(s) 573
SlaI CTCGAG 1 cut(s) 573
SmiMI CAYNNNNRTG 1 cut(s) 376
SmlI CTYRAG 5 cut(s) 199, 274, 316, 502, 573
SmoI CTYRAG 5 cut(s) 199, 274, 316, 502, 573
Sse9I AATT 2 cut(s) 326, 512
SsiI CCGC 9 cut(s) 170, 254, 323, 375, 494, 525, 554, 557, 644
StyD4I CCNGG 1 cut(s) 383
StyI CCWWGG 1 cut(s) 533
TaaI ACNGT 5 cut(s) 20, 357, 450, 607, 706
TaiI ACGT 1 cut(s) 42
TaqI TCGA 3 cut(s) 180, 483, 574
TasI AATT 2 cut(s) 326, 512
TatI WGTACW 1 cut(s) 291
TauI GCSGC 3 cut(s) 556, 559, 646
TscAI CASTG 2 cut(s) 476, 610
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 72, 86
TspRI CASTG 2 cut(s) 476, 610
XcmI CCANNNNNNNNNTGG 1 cut(s) 417
XhoI CTCGAG 1 cut(s) 573
XmiI GTMKAC 2 cut(s) 180, 634
ZrmI AGTACT 1 cut(s) 293
Zsp2I ATGCAT 2 cut(s) 110, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.