Rorug05G0096000

Snapin/Pallidin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009347
Physical Location & Seq
Forward (+)
8531974 .. 8534003
2030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0096000.1

Sequence Viewer

Length: 711 bp
ATGGCGAGCCTATCACTGTCCTCCACGTCAGCGCAGACCTTCTCTCTCCACCGCAGCAGCACAAGCAAGGTCGTCTCCGCCGCGCCTCTGCTTCAGGCCAGGAAGAAGCTCTTTGGCGTTTTCCCCCGCGCCTCCAGCTCACTCCATTACCATCCACTCAGAGTTTCGATCGGTAGAAACGTTTCGATTAGTGGAAACGATGAGTTGAAGTTGATGAAGAAGAAGAAGAAGATCAGGAGGGGAATGACTACAGTTTGTTATGCTTTACCTCTCAGAGTCGATACTATCCAGTGGATCGCCACCATCTCATCTGCGATCCTGATGTTTGTGAAAGGAACTGCTGTGCAGAAATCGTTTCTTGTGCCCTTGTTTGCTCTACAAGCACCGGGTCACCTCATCTCATGGATTAAGGGTGAATATGGCATCTGGGCCGCATTTTTGGCGCTTCTTGTTCGTCTCTTCTTCTACATTCCTGGGGAACTTGAATTGCCATTAGTAGCATGTCTCCTGGTGATTGTTGCTCCACACCAAGTTATGAGACTTAGGGGAAGACAAGAAGGTGCTATTCTTTCCCTAGTCATTGCAGGATATTTGGCTTTTCAGCATTTCTCACGCATTGGAAGCTTGAACCAGTCATTTGACCGAGGTTCAATTGTTGCAACCTTAGCCATCATTTGTCTCACTGTTCTGTCATGCTTGCTCCTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Snapin_Pallidin

Protein Analysis

236

Amino Acids

25.93

Weight (kDa)

10.47

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WCOR413 PF05562 67 - 227 2.5e-50 Cold acclimation protein WCOR413
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 83, 129
AciI CCGC 5 cut(s) 52, 78, 81, 127, 432
AclI AACGTT 1 cut(s) 180
AclWI GGATC 2 cut(s) 302, 310
AcuI CTGAAG 1 cut(s) 77
AgsI TTSAA 4 cut(s) 208, 485, 628, 651
AjiI CACGTC 1 cut(s) 27
AjnI CCWGG 3 cut(s) 98, 472, 507
AluBI AGCT 3 cut(s) 109, 138, 624
AluI AGCT 3 cut(s) 109, 138, 624
Alw26I GTCTC 5 cut(s) 79, 461, 509, 532, 683
AlwI GGATC 2 cut(s) 302, 310
AoxI GGCC 2 cut(s) 96, 429
ApeKI GCWGC 2 cut(s) 54, 57
Asp700I GAANNNNTTC 1 cut(s) 181
AspLEI GCGC 4 cut(s) 34, 85, 131, 445
AspS9I GGNCC 1 cut(s) 429
AsuC2I CCSGG 1 cut(s) 387
AsuHPI GGTGA 3 cut(s) 383, 425, 523
BaeGI GKGCMC 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 556
BbvI GCAGC 2 cut(s) 66, 69
BccI CCATC 3 cut(s) 159, 311, 677
BciT130I CCWGG 3 cut(s) 100, 474, 509
BcnI CCSGG 1 cut(s) 387
BcoDI GTCTC 5 cut(s) 79, 461, 509, 532, 683
BfaI CTAG 1 cut(s) 575
BfmI CTRYAG 1 cut(s) 249
BfoI RGCGCY 1 cut(s) 446
BisI GCNGC 4 cut(s) 55, 58, 81, 432
BlsI GCNGC 4 cut(s) 56, 59, 82, 433
Bme1390I CCNGG 4 cut(s) 100, 387, 474, 509
BmgBI CACGTC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 429
BmrFI CCNGG 4 cut(s) 100, 387, 474, 509
BmsI GCATC 1 cut(s) 432
BpiI GAAGAC 1 cut(s) 556
BpmI CTGGAG 1 cut(s) 118
Bpu10I CCTNAGC 1 cut(s) 664
BpuMI CCSGG 1 cut(s) 387
BsaJI CCNNGG 2 cut(s) 473, 643
Bse1I ACTGG 2 cut(s) 289, 631
Bse3DI GCAATG 1 cut(s) 579
BseBI CCWGG 3 cut(s) 100, 474, 509
BseDI CCNNGG 2 cut(s) 473, 643
BseGI GGATG 1 cut(s) 151
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 2 cut(s) 172, 286
BseNI ACTGG 2 cut(s) 289, 631
BseSI GKGCMC 1 cut(s) 366
BseXI GCAGC 2 cut(s) 66, 69
BsgI GTGCAG 1 cut(s) 365
Bsh1236I CGCG 2 cut(s) 83, 129
Bsh1285I CGRYCG 1 cut(s) 171
BshFI GGCC 2 cut(s) 98, 431
BsiEI CGRYCG 1 cut(s) 171
BsiSI CCGG 1 cut(s) 386
BsmAI GTCTC 5 cut(s) 79, 461, 509, 532, 683
BsmBI CGTCTC 2 cut(s) 79, 461
BsnI GGCC 2 cut(s) 98, 431
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 4 cut(s) 168, 231, 294, 315
BspACI CCGC 5 cut(s) 52, 78, 81, 127, 432
BspANI GGCC 2 cut(s) 98, 431
BspCNI CTCAG 2 cut(s) 171, 285
BspFNI CGCG 2 cut(s) 83, 129
BspPI GGATC 2 cut(s) 302, 310
BsrDI GCAATG 1 cut(s) 579
BsrI ACTGG 2 cut(s) 289, 631
BssECI CCNNGG 2 cut(s) 473, 643
BssMI GATC 4 cut(s) 168, 231, 294, 315
Bst2UI CCWGG 3 cut(s) 100, 474, 509
Bst4CI ACNGT 3 cut(s) 18, 253, 685
Bst6I CTCTTC 1 cut(s) 464
BstC8I GCNNGC 2 cut(s) 7, 698
BstDEI CTNAG 4 cut(s) 158, 272, 542, 664
BstEII GGTNACC 1 cut(s) 389
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 2 cut(s) 83, 129
BstH2I RGCGCY 1 cut(s) 446
BstHHI GCGC 4 cut(s) 34, 85, 131, 445
BstKTI GATC 4 cut(s) 171, 234, 297, 318
BstMAI GTCTC 5 cut(s) 79, 461, 509, 532, 683
BstMBI GATC 4 cut(s) 168, 231, 294, 315
BstMCI CGRYCG 1 cut(s) 171
BstMWI GCNNNNNNNGC 6 cut(s) 63, 135, 380, 440, 621, 665
BstNI CCWGG 3 cut(s) 100, 474, 509
BstNSI RCATGY 1 cut(s) 504
BstPI GGTNACC 1 cut(s) 389
BstSCI CCNGG 4 cut(s) 98, 385, 472, 507
BstSFI CTRYAG 1 cut(s) 249
BstSLI GKGCMC 1 cut(s) 366
BstUI CGCG 2 cut(s) 83, 129
BstV1I GCAGC 2 cut(s) 66, 69
BstV2I GAAGAC 1 cut(s) 556
BsuRI GGCC 2 cut(s) 98, 431
BtrI CACGTC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 151
BtsIMutI CAGTG 3 cut(s) 14, 296, 681
Cac8I GCNNGC 2 cut(s) 7, 698
CfoI GCGC 4 cut(s) 34, 85, 131, 445
Cfr13I GGNCC 1 cut(s) 429
CviAII CATG 3 cut(s) 402, 501, 693
CviJI RGCY 8 cut(s) 9, 98, 109, 138, 431, 596, 624, 668
CviKI_1 RGCY 8 cut(s) 9, 98, 109, 138, 431, 596, 624, 668
DdeI CTNAG 4 cut(s) 158, 272, 542, 664
DpnI GATC 4 cut(s) 170, 233, 296, 317
DpnII GATC 4 cut(s) 168, 231, 294, 315
Eam1104I CTCTTC 1 cut(s) 464
EarI CTCTTC 1 cut(s) 464
EciI GGCGGA 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 77
Eco91I GGTNACC 1 cut(s) 389
EcoO65I GGTNACC 1 cut(s) 389
EcoRII CCWGG 3 cut(s) 98, 472, 507
Esp3I CGTCTC 2 cut(s) 79, 461
FaeI CATG 3 cut(s) 405, 504, 696
FaiI YATR 6 cut(s) 261, 403, 420, 502, 536, 694
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FatI CATG 3 cut(s) 401, 500, 692
FauI CCCGC 1 cut(s) 134
Fnu4HI GCNGC 4 cut(s) 55, 58, 81, 432
FokI GGATG 1 cut(s) 138
Fsp4HI GCNGC 4 cut(s) 55, 58, 81, 432
FspBI CTAG 1 cut(s) 575
GlaI GCGC 4 cut(s) 33, 84, 130, 444
GluI GCNGC 4 cut(s) 55, 58, 81, 432
GsuI CTGGAG 1 cut(s) 118
HaeII RGCGCY 1 cut(s) 446
HaeIII GGCC 2 cut(s) 98, 431
HapII CCGG 1 cut(s) 386
HhaI GCGC 4 cut(s) 34, 85, 131, 445
Hin1II CATG 3 cut(s) 405, 504, 696
Hin6I GCGC 4 cut(s) 32, 83, 129, 443
HinP1I GCGC 4 cut(s) 32, 83, 129, 443
HindIII AAGCTT 1 cut(s) 622
HinfI GANTC 1 cut(s) 276
HpaII CCGG 1 cut(s) 386
HphI GGTGA 3 cut(s) 383, 425, 523
Hpy188I TCNGA 3 cut(s) 161, 275, 710
Hpy188III TCNNGA 2 cut(s) 235, 319
HpyAV CCTTC 2 cut(s) 49, 551
HpyCH4III ACNGT 3 cut(s) 18, 253, 685
HpyCH4IV ACGT 2 cut(s) 26, 180
HpyCH4V TGCA 3 cut(s) 346, 584, 659
HpyF10VI GCNNNNNNNGC 6 cut(s) 63, 135, 380, 440, 621, 665
HpyF3I CTNAG 4 cut(s) 158, 272, 542, 664
HpySE526I ACGT 2 cut(s) 26, 180
Hsp92II CATG 3 cut(s) 405, 504, 696
HspAI GCGC 4 cut(s) 32, 83, 129, 443
Kzo9I GATC 4 cut(s) 168, 231, 294, 315
LmnI GCTCC 2 cut(s) 526, 705
Lsp1109I GCAGC 2 cut(s) 66, 69
LweI GCATC 1 cut(s) 432
MaeI CTAG 1 cut(s) 575
MaeII ACGT 2 cut(s) 26, 180
MaeIII GTNAC 1 cut(s) 389
MalI GATC 4 cut(s) 170, 233, 296, 317
MboI GATC 4 cut(s) 168, 231, 294, 315
MboII GAAGA 9 cut(s) 115, 229, 232, 235, 238, 241, 451, 454, 561
MfeI CAATTG 1 cut(s) 651
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 2 cut(s) 485, 651
MlyI GAGTC 1 cut(s) 285
MnlI CCTC 7 cut(s) 31, 96, 142, 231, 279, 404, 638
MroXI GAANNNNTTC 1 cut(s) 181
MseI TTAA 1 cut(s) 408
MspI CCGG 1 cut(s) 386
MspR9I CCNGG 4 cut(s) 100, 387, 474, 509
MunI CAATTG 1 cut(s) 651
MvaI CCWGG 3 cut(s) 100, 474, 509
MvnI CGCG 2 cut(s) 83, 129
MwoI GCNNNNNNNGC 6 cut(s) 63, 135, 380, 440, 621, 665
NciI CCSGG 1 cut(s) 387
NdeII GATC 4 cut(s) 168, 231, 294, 315
NlaIII CATG 3 cut(s) 405, 504, 696
NmuCI GTSAC 1 cut(s) 389
NspI RCATGY 1 cut(s) 504
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 181
PkrI GCNGC 4 cut(s) 56, 59, 82, 433
Ple19I CGATCG 1 cut(s) 171
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
Psp1406I AACGTT 1 cut(s) 180
Psp6I CCWGG 3 cut(s) 98, 472, 507
PspEI GGTNACC 1 cut(s) 389
PspGI CCWGG 3 cut(s) 98, 472, 507
PspPI GGNCC 1 cut(s) 429
PvuI CGATCG 1 cut(s) 171
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 4 cut(s) 55, 58, 81, 432
Sau3AI GATC 4 cut(s) 168, 231, 294, 315
Sau96I GGNCC 1 cut(s) 429
SchI GAGTC 1 cut(s) 285
ScrFI CCNGG 4 cut(s) 100, 387, 474, 509
SduI GDGCHC 1 cut(s) 366
SfaNI GCATC 1 cut(s) 432
SfcI CTRYAG 1 cut(s) 249
Sse9I AATT 2 cut(s) 485, 651
SsiI CCGC 5 cut(s) 52, 78, 81, 127, 432
SspMI CTAG 1 cut(s) 575
StyD4I CCNGG 4 cut(s) 98, 385, 472, 507
TaaI ACNGT 3 cut(s) 18, 253, 685
TaiI ACGT 2 cut(s) 29, 183
TaqI TCGA 3 cut(s) 167, 185, 279
TaqII GACCGA 1 cut(s) 657
TasI AATT 2 cut(s) 485, 651
TauI GCSGC 2 cut(s) 83, 434
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 3 cut(s) 21, 296, 688
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 2 cut(s) 54, 57
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 1 cut(s) 230
TspRI CASTG 3 cut(s) 21, 296, 688
XceI RCATGY 1 cut(s) 504
XmnI GAANNNNTTC 1 cut(s) 181
XspI CTAG 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.