Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009347

Physical Location & Seq

Genomic Coordinates Reverse (-)

20310581 .. 20311102

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g17130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAAAGCCAGAAAACCGAGCTGGAGTCATCAGAGGAGACGAGTGTGACTGTGAACCAGAACGAGAACGCGAAGAACAGATTACAGTCGACGGAGGCAAAGGCGCTTTCGTCGATGCTCACCACCGTCATCAGAGACTTCGATTACAAAGCTCAGCAGACCTTCGCCAGCCAGGACCACCTCTCTCAGTCGCTCCATCGCCTCACCCGCGTCTTGTGGGCAGAGCTGGATAAGTTGTTGGACGCTGCACCGTCTCCGTTCATCATGCAACACGCCGCCAAGAATTCCGCCGTTAGGAAGAGAGTTTCGTCGTTGAATTCGGTTCTCAAGTCCGTACAGCGCCGGCTTGATAACATCGACAGAATGCTGTTTGTCGGTGTTCCAAATCAGCATCAGCAGCAACAGCAACATGGTATTTGCAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Snapin_Pallidin

Protein Analysis

143

Amino Acids

16.16

Weight (kDa)

9.41

Isoelectric Point (pI)

57.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79070 AT1G79070
fragaria_vesca	FvH4_3g16000 FvH4_3g16000 FvH4_3g16000
malus_domestica	MD05G1216100.v1.1
prunus_persica	Prupe.4G143100_v2.0.a1 Prupe.4G143100_v2.0.a1
pyrus_communis	pycom10g17130
rosa_chinensis	RchiOBHm_Chr5g0026941
rosa_laevigata	RLG00000032971
rosa_multiflora	Rmu_sc0008732.1_g000002
rosa_roxburghii	Rroxscaffold_1G00052530
rosa_rugosa	Rorug05G0096000 Rorug05G0096100 Rorug05G0096200 Rorug05G0096300
rosa_samantha	Rh5AG189700 Rh5BG187200 Rh5CG206900 Rh5DG188900
rosa_wichuraiana	Rw5G017260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	89
AccII	CGCG	2 cut(s)	71, 210
AciI	CCGC	3 cut(s)	208, 276, 288
AcsI	RAATTY	2 cut(s)	283, 316
AfaI	GTAC	1 cut(s)	336
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	3 cut(s)	22, 152, 226
AluI	AGCT	3 cut(s)	22, 152, 226
Alw26I	GTCTC	3 cut(s)	32, 129, 258
ApeKI	GCWGC	2 cut(s)	245, 397
ApoI	RAATTY	2 cut(s)	283, 316
AspLEI	GCGC	2 cut(s)	106, 342
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	2 cut(s)	112, 196
AvaII	GGWCC	1 cut(s)	175
BbvI	GCAGC	2 cut(s)	232, 409
BccI	CCATC	1 cut(s)	204
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	1 cut(s)	173
BcoDI	GTCTC	3 cut(s)	32, 129, 258
BfoI	RGCGCY	2 cut(s)	107, 343
BisI	GCNGC	3 cut(s)	246, 276, 398
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	3 cut(s)	247, 277, 399
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	2 cut(s)	105, 400
BpmI	CTGGAG	1 cut(s)	44
Bpu1102I	GCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse118I	RCCGGY	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	167, 200
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	2 cut(s)	232, 409
BsgI	GTGCAG	1 cut(s)	231
Bsh1236I	CGCG	2 cut(s)	71, 210
BsiSI	CCGG	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	3 cut(s)	32, 129, 258
BsmBI	CGTCTC	2 cut(s)	32, 258
BsmI	GAATGC	1 cut(s)	369
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	3 cut(s)	208, 276, 288
BspCNI	CTCAG	2 cut(s)	166, 199
BspFNI	CGCG	2 cut(s)	71, 210
BsrFI	RCCGGY	1 cut(s)	342
BssAI	RCCGGY	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	4 cut(s)	52, 87, 127, 252
Bst6I	CTCTTC	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	169, 344
BstDEI	CTNAG	2 cut(s)	153, 186
BstFNI	CGCG	2 cut(s)	71, 210
BstH2I	RGCGCY	2 cut(s)	107, 343
BstHHI	GCGC	2 cut(s)	106, 342
BstMAI	GTCTC	3 cut(s)	32, 129, 258
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 397, 403
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstUI	CGCG	2 cut(s)	71, 210
BstV1I	GCAGC	2 cut(s)	232, 409
BtgZI	GCGATG	1 cut(s)	182
Cac8I	GCNNGC	2 cut(s)	169, 344
CfoI	GCGC	2 cut(s)	106, 342
Cfr10I	RCCGGY	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	175
CseI	GACGC	2 cut(s)	199, 251
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	2 cut(s)	265, 410
CviJI	RGCY	6 cut(s)	9, 22, 152, 171, 226, 346
CviKI_1	RGCY	6 cut(s)	9, 22, 152, 171, 226, 346
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	2 cut(s)	153, 186
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
EciI	GGCGGA	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	175
EcoRI	GAATTC	2 cut(s)	283, 316
EcoRII	CCWGG	1 cut(s)	171
Esp3I	CGTCTC	2 cut(s)	32, 258
FaeI	CATG	2 cut(s)	268, 413
FaiI	YATR	2 cut(s)	266, 411
FatI	CATG	2 cut(s)	264, 409
FauI	CCCGC	1 cut(s)	215
FblI	GTMKAC	1 cut(s)	89
Fnu4HI	GCNGC	3 cut(s)	246, 276, 398
Fsp4HI	GCNGC	3 cut(s)	246, 276, 398
GlaI	GCGC	2 cut(s)	105, 341
GluI	GCNGC	3 cut(s)	246, 276, 398
GsuI	CTGGAG	1 cut(s)	44
HaeII	RGCGCY	2 cut(s)	107, 343
HapII	CCGG	1 cut(s)	343
HgaI	GACGC	2 cut(s)	199, 251
HhaI	GCGC	2 cut(s)	106, 342
Hin1II	CATG	2 cut(s)	268, 413
Hin6I	GCGC	2 cut(s)	104, 340
HinP1I	GCGC	2 cut(s)	104, 340
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	1 cut(s)	343
HphI	GGTGA	2 cut(s)	112, 196
Hpy166II	GTNNAC	2 cut(s)	55, 90
Hpy188I	TCNGA	2 cut(s)	34, 134
Hpy8I	GTNNAC	2 cut(s)	55, 90
Hpy99I	CGWCG	3 cut(s)	94, 115, 313
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	4 cut(s)	52, 87, 127, 252
HpyCH4V	TGCA	3 cut(s)	248, 268, 420
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 397, 403
HpyF3I	CTNAG	2 cut(s)	153, 186
Hsp92II	CATG	2 cut(s)	268, 413
HspAI	GCGC	2 cut(s)	104, 340
KroI	GCCGGC	1 cut(s)	342
KroNI	GCCGGC	1 cut(s)	344
LmnI	GCTCC	1 cut(s)	198
LpnPI	CCDG	8 cut(s)	8, 23, 71, 158, 181, 185, 212, 356
Lsp1109I	GCAGC	2 cut(s)	232, 409
LweI	GCATC	2 cut(s)	105, 400
MaeIII	GTNAC	1 cut(s)	46
MboII	GAAGA	2 cut(s)	85, 310
MluCI	AATT	2 cut(s)	283, 316
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	4 cut(s)	28, 88, 191, 212
MroNI	GCCGGC	1 cut(s)	342
MspI	CCGG	1 cut(s)	343
MspR9I	CCNGG	1 cut(s)	173
Mva1269I	GAATGC	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	2 cut(s)	71, 210
MwoI	GCNNNNNNNGC	3 cut(s)	207, 397, 403
NaeI	GCCGGC	1 cut(s)	344
NgoMIV	GCCGGC	1 cut(s)	342
NlaIII	CATG	2 cut(s)	268, 413
NmuCI	GTSAC	1 cut(s)	46
PctI	GAATGC	1 cut(s)	369
PdiI	GCCGGC	1 cut(s)	344
PkrI	GCNGC	3 cut(s)	247, 277, 399
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	175
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
SalI	GTCGAC	1 cut(s)	88
SatI	GCNGC	3 cut(s)	246, 276, 398
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	173
SetI	ASST	5 cut(s)	24, 154, 164, 183, 228
SfaNI	GCATC	2 cut(s)	105, 400
SinI	GGWCC	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	2 cut(s)	283, 316
SsiI	CCGC	3 cut(s)	208, 276, 288
StyD4I	CCNGG	1 cut(s)	171
TaaI	ACNGT	4 cut(s)	52, 87, 127, 252
TaqI	TCGA	4 cut(s)	89, 113, 141, 357
TasI	AATT	2 cut(s)	283, 316
TauI	GCSGC	1 cut(s)	278
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	2 cut(s)	245, 397
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	250
TspGWI	ACGGA	3 cut(s)	107, 246, 322
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	2 cut(s)	283, 316
XmiI	GTMKAC	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.