Prupe.4G143100_v2.0.a1

Snapin/Pallidin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0009347
Physical Location & Seq
Forward (+)
8201882 .. 8204514
2633 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G143100.1

Sequence Viewer

Length: 504 bp
ATGGAAAGCAAGGAAACCCAGTTCGAGTCATCTTCAGAGGAGAAGAGTGTGAGTGTGCACGAGACAGAGAATCAGAGTGAGAACGAAAGCCAGAGATTGCAATCGGAGGCTCTGGCAAAAGCACTATCTTCGATGCTCACGACCGTCATTAAAGAGTTCGATTCAAAAGCTCAGCAAACCTCCACAAGCCAAGACCACCTCTCTCAATCGCTCGATCGCCTTACCCGCGAACTTGATAAGTTGCTAGAAGATGCGCCGCTGCCGTTCATAATGCAGCACGCGGCCAAGATTTCTGTCGTTCGAAAGAGAGTTTCGTCGTTGAATTCGGTTTTGAAGTCAGTACAGCGCCGTCTTGACAATATAGACCGCATGCTGTCTGTTGGCGTATCACACCAACATCAACAGCAACAACAACATGGCACACAAGTGGCAAGTCTTGTTGTTCTCTTTCCTTGCAGTGGGAACCTAAGAGTTTCAACTTATCTAGGAGGCCATGCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Snapin_Pallidin

Protein Analysis

168

Amino Acids

18.64

Weight (kDa)

6.38

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 228, 281
AciI CCGC 4 cut(s) 226, 257, 281, 367
AcoI YGGCCR 1 cut(s) 282
AcsI RAATTY 1 cut(s) 322
AcuI CTGAAG 1 cut(s) 18
AfaI GTAC 1 cut(s) 342
AfiI CCNNNNNNNGG 1 cut(s) 458
AgsI TTSAA 4 cut(s) 165, 322, 334, 477
AleI CACNNNNGTG 1 cut(s) 425
AloI GAACNNNNNNTCC 1 cut(s) 37
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 56
Alw44I GTGCAC 1 cut(s) 56
AoxI GGCC 2 cut(s) 282, 490
ApaLI GTGCAC 1 cut(s) 56
ApeKI GCWGC 2 cut(s) 259, 274
ApoI RAATTY 1 cut(s) 322
AspLEI GCGC 2 cut(s) 256, 348
AsuII TTCGAA 1 cut(s) 301
BaeGI GKGCMC 1 cut(s) 60
BauI CACGAG 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 246, 286
BceAI ACGGC 2 cut(s) 247, 333
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 2 cut(s) 245, 485
BfoI RGCGCY 1 cut(s) 349
BisI GCNGC 4 cut(s) 257, 260, 275, 282
BlpI GCTNAGC 1 cut(s) 171
BlsI GCNGC 4 cut(s) 258, 261, 276, 283
BmiI GGNNCC 1 cut(s) 464
BmrI ACTGGG 1 cut(s) 13
BmsI GCATC 2 cut(s) 123, 241
BmuI ACTGGG 1 cut(s) 13
Bpu1102I GCTNAGC 1 cut(s) 171
Bpu14I TTCGAA 1 cut(s) 301
BsaBI GATNNNNATC 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 458
Bse1I ACTGG 1 cut(s) 19
Bse8I GATNNNNATC 1 cut(s) 100
BseJI GATNNNNATC 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 458
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 53
BseSI GKGCMC 1 cut(s) 60
BseXI GCAGC 2 cut(s) 246, 286
Bsh1236I CGCG 2 cut(s) 228, 281
Bsh1285I CGRYCG 2 cut(s) 144, 217
BshFI GGCC 2 cut(s) 284, 492
BsiEI CGRYCG 2 cut(s) 144, 217
BsiHKAI GWGCWC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 458
BsmAI GTCTC 1 cut(s) 56
BsnI GGCC 2 cut(s) 284, 492
Bsp119I TTCGAA 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 214
Bsp1720I GCTNAGC 1 cut(s) 171
BspACI CCGC 4 cut(s) 226, 257, 281, 367
BspANI GGCC 2 cut(s) 284, 492
BspCNI CTCAG 1 cut(s) 184
BspFNI CGCG 2 cut(s) 228, 281
BspLI GGNNCC 1 cut(s) 464
BspT104I TTCGAA 1 cut(s) 301
BsrI ACTGG 1 cut(s) 19
BssMI GATC 1 cut(s) 214
BssSI CACGAG 1 cut(s) 59
Bst2BI CACGAG 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 38
BstBI TTCGAA 1 cut(s) 301
BstC8I GCNNGC 2 cut(s) 279, 371
BstDEI CTNAG 2 cut(s) 171, 467
BstFNI CGCG 2 cut(s) 228, 281
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 2 cut(s) 256, 348
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 214
BstMCI CGRYCG 2 cut(s) 144, 217
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 373
BstSLI GKGCMC 1 cut(s) 60
BstUI CGCG 2 cut(s) 228, 281
BstV1I GCAGC 2 cut(s) 246, 286
BsuRI GGCC 2 cut(s) 284, 492
BtsI GCAGTG 1 cut(s) 463
BtsIMutI CAGTG 1 cut(s) 463
Cac8I GCNNGC 2 cut(s) 279, 371
CfoI GCGC 2 cut(s) 256, 348
Csp6I GTAC 1 cut(s) 341
CviAII CATG 3 cut(s) 370, 416, 494
CviJI RGCY 6 cut(s) 90, 110, 170, 189, 284, 492
CviKI_1 RGCY 6 cut(s) 90, 110, 170, 189, 284, 492
CviQI GTAC 1 cut(s) 341
DdeI CTNAG 2 cut(s) 171, 467
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco57I CTGAAG 1 cut(s) 18
EcoRI GAATTC 1 cut(s) 322
FaeI CATG 3 cut(s) 373, 419, 497
FaiI YATR 6 cut(s) 269, 362, 371, 417, 495, 502
FatI CATG 3 cut(s) 369, 415, 493
FauI CCCGC 1 cut(s) 233
Fnu4HI GCNGC 4 cut(s) 257, 260, 275, 282
Fsp4HI GCNGC 4 cut(s) 257, 260, 275, 282
FspBI CTAG 2 cut(s) 245, 485
GlaI GCGC 2 cut(s) 255, 347
GluI GCNGC 4 cut(s) 257, 260, 275, 282
HaeII RGCGCY 1 cut(s) 349
HaeIII GGCC 2 cut(s) 284, 492
HhaI GCGC 2 cut(s) 256, 348
Hin1II CATG 3 cut(s) 373, 419, 497
Hin6I GCGC 2 cut(s) 254, 346
HinP1I GCGC 2 cut(s) 254, 346
HinfI GANTC 3 cut(s) 26, 70, 161
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 3 cut(s) 37, 75, 106
Hpy188III TCNNGA 2 cut(s) 139, 353
Hpy8I GTNNAC 1 cut(s) 58
Hpy99I CGWCG 1 cut(s) 319
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 4 cut(s) 58, 100, 274, 456
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
HpyF3I CTNAG 2 cut(s) 171, 467
Hsp92II CATG 3 cut(s) 373, 419, 497
HspAI GCGC 2 cut(s) 254, 346
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 3 cut(s) 32, 98, 104
Lsp1109I GCAGC 2 cut(s) 246, 286
LweI GCATC 2 cut(s) 123, 241
MaeI CTAG 2 cut(s) 245, 485
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 4 cut(s) 24, 55, 120, 260
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 1 cut(s) 322
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 5 cut(s) 31, 100, 190, 209, 482
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 1 cut(s) 425
MspA1I CMGCKG 1 cut(s) 259
MvnI CGCG 2 cut(s) 228, 281
MwoI GCNNNNNNNGC 1 cut(s) 225
NdeII GATC 1 cut(s) 214
NlaIII CATG 3 cut(s) 373, 419, 497
NlaIV GGNNCC 1 cut(s) 464
NspI RCATGY 1 cut(s) 373
NspV TTCGAA 1 cut(s) 301
OliI CACNNNNGTG 1 cut(s) 425
PaeI GCATGC 1 cut(s) 373
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PfeI GAWTC 2 cut(s) 70, 161
PkrI GCNGC 4 cut(s) 258, 261, 276, 283
Ple19I CGATCG 1 cut(s) 217
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 464
PvuI CGATCG 1 cut(s) 217
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
RseI CAYNNNNRTG 1 cut(s) 425
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 4 cut(s) 257, 260, 275, 282
Sau3AI GATC 1 cut(s) 214
SchI GAGTC 1 cut(s) 35
SduI GDGCHC 1 cut(s) 60
SetI ASST 4 cut(s) 172, 182, 201, 468
SfaNI GCATC 2 cut(s) 123, 241
SfuI TTCGAA 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 425
SphI GCATGC 1 cut(s) 373
Sse9I AATT 1 cut(s) 322
SsiI CCGC 4 cut(s) 226, 257, 281, 367
SspMI CTAG 2 cut(s) 245, 485
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 5 cut(s) 24, 131, 159, 213, 301
TasI AATT 1 cut(s) 322
TatI WGTACW 1 cut(s) 340
TauI GCSGC 2 cut(s) 259, 284
TfiI GAWTC 2 cut(s) 70, 161
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 463
TseI GCWGC 2 cut(s) 259, 274
TspDTI ATGAA 1 cut(s) 256
TspRI CASTG 1 cut(s) 463
VneI GTGCAC 1 cut(s) 56
XapI RAATTY 1 cut(s) 322
XceI RCATGY 1 cut(s) 373
XspI CTAG 2 cut(s) 245, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.