Rh5AG189700

Snapin/Pallidin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0009347
Physical Location & Seq
Forward (+)
21831348 .. 21833963
2616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG189700.1

Sequence Viewer

Length: 444 bp
ATGGAAAACGGAGACAACCACGGCGGCGAGTCATCGTACCCAAATGCCGACCAGACCGAGACTGAGACTCAGAAGAAGTCAACAATGGAATCGGAGGCTTTGGCAAAGGGACTGTCTTCCACCCTCGCCACCATCATTAAAGACTTCGATTCCAAAGCGCAGCAGACCTTCACCAGCCAAGACCAGCTCTCTCAAGCCCTCGATCGCCTCACCCGCGAGCTTGATAAGTTGTTGGAGGGTGCTCCGTTGCCGTTCATAATGCAACACGCGGCGAAGATAACGGCGGTTAGGAAGAGGGTTTTGTCTCTCAACTCCGTTTTGAAGAATGTTCAACGCCGTCTTGATAATATAGACCGCATCTTAACTCTGGGCGCCCCACATCAAAACCAACATGGTATTTTTCTTGGTTTTCAGTTTATGAGTAGATTAATGCTAGAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Snapin_Pallidin

Protein Analysis

147

Amino Acids

16.42

Weight (kDa)

6.42

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snapin_Pallidin PF14712 32 - 117 7.4e-22 Snapin/Pallidin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 371
AccII CGCG 2 cut(s) 216, 269
AciI CCGC 5 cut(s) 24, 214, 269, 284, 355
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 1 cut(s) 38
AgsI TTSAA 2 cut(s) 322, 332
AluBI AGCT 2 cut(s) 187, 220
AluI AGCT 2 cut(s) 187, 220
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 4 cut(s) 6, 53, 59, 309
ApeKI GCWGC 1 cut(s) 160
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AseI ATTAAT 1 cut(s) 428
AspLEI GCGC 2 cut(s) 160, 374
AsuHPI GGTGA 2 cut(s) 163, 202
BanI GGYRCC 1 cut(s) 371
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 172
BccI CCATC 1 cut(s) 140
BceAI ACGGC 4 cut(s) 37, 235, 297, 321
BcoDI GTCTC 4 cut(s) 6, 53, 59, 309
BfaI CTAG 1 cut(s) 434
BfoI RGCGCY 1 cut(s) 375
BisI GCNGC 3 cut(s) 25, 161, 270
BlsI GCNGC 3 cut(s) 26, 162, 271
BmiI GGNNCC 1 cut(s) 373
BmsI GCATC 1 cut(s) 366
BpiI GAAGAC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 54, 83
BseXI GCAGC 1 cut(s) 172
Bsh1236I CGCG 2 cut(s) 216, 269
Bsh1285I CGRYCG 1 cut(s) 205
BshNI GGYRCC 1 cut(s) 371
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 244
BslFI GGGAC 1 cut(s) 123
BsmAI GTCTC 4 cut(s) 6, 53, 59, 309
BsmFI GGGAC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 5 cut(s) 24, 214, 269, 284, 355
BspCNI CTCAG 2 cut(s) 55, 82
BspFNI CGCG 2 cut(s) 216, 269
BspLI GGNNCC 1 cut(s) 373
BspT107I GGYRCC 1 cut(s) 371
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 1 cut(s) 202
BssNI GRCGYC 1 cut(s) 372
Bst4CI ACNGT 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 287
BstACI GRCGYC 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 218
BstDEI CTNAG 2 cut(s) 63, 69
BstDSI CCRYGG 1 cut(s) 19
BstFNI CGCG 2 cut(s) 216, 269
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 2 cut(s) 160, 374
BstKTI GATC 1 cut(s) 205
BstMAI GTCTC 4 cut(s) 6, 53, 59, 309
BstMBI GATC 1 cut(s) 202
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstUI CGCG 2 cut(s) 216, 269
BstV1I GCAGC 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 218
CfoI GCGC 2 cut(s) 160, 374
Csp6I GTAC 1 cut(s) 37
CviAII CATG 1 cut(s) 392
CviJI RGCY 5 cut(s) 98, 177, 187, 197, 220
CviKI_1 RGCY 5 cut(s) 98, 177, 187, 197, 220
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 2 cut(s) 63, 69
DinI GGCGCC 1 cut(s) 373
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
EgeI GGCGCC 1 cut(s) 373
EheI GGCGCC 1 cut(s) 373
FaeI CATG 1 cut(s) 395
FaiI YATR 4 cut(s) 257, 350, 393, 419
FaqI GGGAC 1 cut(s) 123
FatI CATG 1 cut(s) 391
FauI CCCGC 1 cut(s) 221
Fnu4HI GCNGC 3 cut(s) 25, 161, 270
Fsp4HI GCNGC 3 cut(s) 25, 161, 270
FspBI CTAG 1 cut(s) 434
GlaI GCGC 2 cut(s) 159, 373
GluI GCNGC 3 cut(s) 25, 161, 270
HaeII RGCGCY 1 cut(s) 375
HhaI GCGC 2 cut(s) 160, 374
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 1 cut(s) 395
Hin6I GCGC 2 cut(s) 158, 372
HinP1I GCGC 2 cut(s) 158, 372
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HinfI GANTC 4 cut(s) 29, 67, 89, 149
HphI GGTGA 2 cut(s) 163, 202
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 2 cut(s) 72, 94
Hpy188III TCNNGA 1 cut(s) 341
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4V TGCA 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
HpyF3I CTNAG 2 cut(s) 63, 69
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 1 cut(s) 395
HspAI GCGC 2 cut(s) 158, 372
KasI GGCGCC 1 cut(s) 371
Kzo9I GATC 1 cut(s) 202
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 4 cut(s) 65, 187, 197, 353
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 1 cut(s) 366
MaeI CTAG 1 cut(s) 434
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 5 cut(s) 85, 108, 286, 304, 334
MhlI GDGCHC 1 cut(s) 244
Mly113I GGCGCC 1 cut(s) 372
MlyI GAGTC 2 cut(s) 38, 61
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 6 cut(s) 88, 134, 209, 218, 229, 288
MseI TTAA 4 cut(s) 138, 362, 428, 442
MvnI CGCG 2 cut(s) 216, 269
MwoI GCNNNNNNNGC 1 cut(s) 213
NarI GGCGCC 1 cut(s) 372
NdeII GATC 1 cut(s) 202
NlaIII CATG 1 cut(s) 395
NlaIV GGNNCC 1 cut(s) 373
PfeI GAWTC 2 cut(s) 89, 149
PkrI GCNGC 3 cut(s) 26, 162, 271
Ple19I CGATCG 1 cut(s) 205
PleI GAGTC 2 cut(s) 37, 61
PluTI GGCGCC 1 cut(s) 375
PpsI GAGTC 2 cut(s) 37, 61
PshBI ATTAAT 1 cut(s) 428
PspN4I GGNNCC 1 cut(s) 373
PvuI CGATCG 1 cut(s) 205
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SaqAI TTAA 4 cut(s) 138, 362, 428, 442
SatI GCNGC 3 cut(s) 25, 161, 270
Sau3AI GATC 1 cut(s) 202
SchI GAGTC 2 cut(s) 38, 61
SduI GDGCHC 1 cut(s) 244
SetI ASST 3 cut(s) 170, 189, 222
SfaNI GCATC 1 cut(s) 366
SfoI GGCGCC 1 cut(s) 373
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
SsiI CCGC 5 cut(s) 24, 214, 269, 284, 355
SspDI GGCGCC 1 cut(s) 371
SspMI CTAG 1 cut(s) 434
TaaI ACNGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 147, 201
TaqII GACCGA 1 cut(s) 71
TauI GCSGC 2 cut(s) 27, 272
TfiI GAWTC 2 cut(s) 89, 149
Tru1I TTAA 4 cut(s) 138, 362, 428, 442
Tru9I TTAA 4 cut(s) 138, 362, 428, 442
TseI GCWGC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 244
TspGWI ACGGA 3 cut(s) 24, 234, 304
VspI ATTAAT 1 cut(s) 428
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.