RLG00000032971

Snapin/Pallidin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0009347
Physical Location & Seq
Forward (+)
21563891 .. 21566251
2361 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032971

Sequence Viewer

Length: 423 bp
ATGGAAAACGGAGACAACCACGGCGGCGAGTCATCGTACCCAAATGCCGACCAGACCGAGATTCAGAAGAAGACAACATTGGAATCGGAGGCTTTGGCAAAGGGACTGTCTTCCACCCTCGCCACCATCATCAAAGACTTCGATTCCAAAGCGCAGCAAACCTTCTCCAGCCAAGACCAGCTCTCTCAAGCCCTCGATCGCCTCACCCGCGAGCTTGATAAGTTGTTAGAGGATGCTCCGTTGCCGTTCATAATGCAACACGCGGCGAAGATAACGGCGGTTAGGAAGAGGGTTTTGTCTCTCAACTCGGTTTTGAAGAATGTTCAACGCCGTCTTGATAATATAGACCGCATCTTAACTCTGGGCGTCCCACATCAAAATCAACATGATAAGACATCCACCGAACATTCAGGGCTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Snapin_Pallidin

Protein Analysis

141

Amino Acids

15.59

Weight (kDa)

6.19

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snapin_Pallidin PF14712 30 - 115 2.9e-22 Snapin/Pallidin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 210, 263
AciI CCGC 5 cut(s) 24, 208, 263, 278, 349
AcyI GRCGYC 1 cut(s) 366
AfaI GTAC 1 cut(s) 38
AgsI TTSAA 2 cut(s) 316, 326
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AluBI AGCT 2 cut(s) 181, 214
AluI AGCT 2 cut(s) 181, 214
Alw26I GTCTC 2 cut(s) 6, 303
ApeKI GCWGC 2 cut(s) 154, 415
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
AspLEI GCGC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 196
BbsI GAAGAC 2 cut(s) 77, 102
BbvI GCAGC 2 cut(s) 166, 402
BccI CCATC 1 cut(s) 134
BceAI ACGGC 4 cut(s) 37, 229, 291, 315
BcoDI GTCTC 2 cut(s) 6, 303
BfmI CTRYAG 1 cut(s) 416
BisI GCNGC 4 cut(s) 25, 155, 264, 416
BlsI GCNGC 4 cut(s) 26, 156, 265, 417
BmsI GCATC 2 cut(s) 223, 360
BpiI GAAGAC 2 cut(s) 77, 102
BpmI CTGGAG 1 cut(s) 151
BpuEI CTTGAG 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 2 cut(s) 238, 395
BseXI GCAGC 2 cut(s) 166, 402
Bsh1236I CGCG 2 cut(s) 210, 263
Bsh1285I CGRYCG 1 cut(s) 199
BsiEI CGRYCG 1 cut(s) 199
BslFI GGGAC 2 cut(s) 117, 353
BsmAI GTCTC 2 cut(s) 6, 303
BsmFI GGGAC 2 cut(s) 117, 353
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 5 cut(s) 24, 208, 263, 278, 349
BspFNI CGCG 2 cut(s) 210, 263
BspMAI CTGCAG 1 cut(s) 420
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 1 cut(s) 196
BssNI GRCGYC 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 108
Bst6I CTCTTC 1 cut(s) 281
BstACI GRCGYC 1 cut(s) 366
BstC8I GCNNGC 1 cut(s) 212
BstDSI CCRYGG 1 cut(s) 19
BstF5I GGATG 2 cut(s) 238, 395
BstFNI CGCG 2 cut(s) 210, 263
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 2 cut(s) 6, 303
BstMBI GATC 1 cut(s) 196
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstSFI CTRYAG 1 cut(s) 416
BstUI CGCG 2 cut(s) 210, 263
BstV1I GCAGC 2 cut(s) 166, 402
BstV2I GAAGAC 2 cut(s) 77, 102
BtgI CCRYGG 1 cut(s) 19
BtsCI GGATG 2 cut(s) 238, 395
Cac8I GCNNGC 1 cut(s) 212
CfoI GCGC 1 cut(s) 154
CseI GACGC 1 cut(s) 355
Csp6I GTAC 1 cut(s) 37
CviAII CATG 1 cut(s) 386
CviJI RGCY 6 cut(s) 92, 171, 181, 191, 214, 415
CviKI_1 RGCY 6 cut(s) 92, 171, 181, 191, 214, 415
CviQI GTAC 1 cut(s) 37
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
FaeI CATG 1 cut(s) 389
FaiI YATR 3 cut(s) 251, 344, 387
FaqI GGGAC 2 cut(s) 117, 353
FatI CATG 1 cut(s) 385
FauI CCCGC 1 cut(s) 215
Fnu4HI GCNGC 4 cut(s) 25, 155, 264, 416
FokI GGATG 2 cut(s) 245, 382
Fsp4HI GCNGC 4 cut(s) 25, 155, 264, 416
GlaI GCGC 1 cut(s) 153
GluI GCNGC 4 cut(s) 25, 155, 264, 416
GsuI CTGGAG 1 cut(s) 151
HgaI GACGC 1 cut(s) 355
HhaI GCGC 1 cut(s) 154
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 1 cut(s) 389
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HinfI GANTC 4 cut(s) 29, 61, 83, 143
HphI GGTGA 1 cut(s) 196
Hpy188I TCNGA 2 cut(s) 66, 88
Hpy188III TCNNGA 1 cut(s) 335
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 108
HpyCH4V TGCA 2 cut(s) 256, 418
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 1 cut(s) 389
HspAI GCGC 1 cut(s) 152
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 5 cut(s) 65, 181, 191, 347, 396
Lsp1109I GCAGC 2 cut(s) 166, 402
LweI GCATC 2 cut(s) 223, 360
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 6 cut(s) 79, 82, 102, 280, 298, 328
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 6 cut(s) 82, 128, 203, 212, 223, 282
MseI TTAA 1 cut(s) 356
MvnI CGCG 2 cut(s) 210, 263
MwoI GCNNNNNNNGC 1 cut(s) 207
NdeII GATC 1 cut(s) 196
NlaIII CATG 1 cut(s) 389
PfeI GAWTC 3 cut(s) 61, 83, 143
PkrI GCNGC 4 cut(s) 26, 156, 265, 417
Ple19I CGATCG 1 cut(s) 199
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PstI CTGCAG 1 cut(s) 420
PvuI CGATCG 1 cut(s) 199
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 4 cut(s) 25, 155, 264, 416
Sau3AI GATC 1 cut(s) 196
SchI GAGTC 1 cut(s) 38
SetI ASST 3 cut(s) 164, 183, 216
SfaNI GCATC 2 cut(s) 223, 360
SfcI CTRYAG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
SsiI CCGC 5 cut(s) 24, 208, 263, 278, 349
TaaI ACNGT 1 cut(s) 108
TaqI TCGA 2 cut(s) 141, 195
TaqII GACCGA 1 cut(s) 71
TauI GCSGC 2 cut(s) 27, 266
TfiI GAWTC 3 cut(s) 61, 83, 143
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TseI GCWGC 2 cut(s) 154, 415
TspDTI ATGAA 1 cut(s) 238
TspGWI ACGGA 2 cut(s) 24, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.