Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009347

Physical Location & Seq

Genomic Coordinates Forward (+)

8538572 .. 8539456

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0096200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGATAAGACACTATTTCCATAGCGAAGTGAGGCAACCAGAAACCCTCACTGAGGTTTCAACTCCAAGCTGCAGCGACCTGTTCCCGATCAAATTCCAGCTCTTCGAGGTCACCAGAAGCAGCAGTCGGACAGAAGAAGAAGATGAAAATGCTACTAGTGAGGAATTAGAAGAAGCAAAGCTTGTAGCCGAAAGACAAACTAAACCACTCTCTCGTGCCCAGCTATTGTGTTTGAGGACTCAGGACACATGGGTAATCTGCACAGGGACTCTTTCCAGCATGGGCGTCCCACAAGATGAGCAGCCTGCTATTGTTGCAAAGATATTCGAGGCCTTGAAAGTCGCCGTCCCCTTCCGGCCTATCTGCGTGGTCATCAAGGACATTGTGACCGTGCAGGAGCGCAGTGGTGGGAATGAAAGTTCGAACAAAGTGAGATTTGATAGCTTGGAAGTTAAGGAAGAGGAACAGGACGAGGAGGAGGAGGAGTGTGTTATTTGTCTGGAGGGCCTTTCTGACTTTGGCCCCAAGAGCGTTACGCACTTACCCTGCTCACACATTTATCATGGAGATTGCATTCTGAAGTGGCAAGAGAAGACTCAGAAGAGTCGTCACTTGTGCTCGTGTCCCGTGTGTCGATGCCCAATTCCTATTGTGGAGATGGCCGGGGAGCCATCACAACGACTTTCGTTGTCGACATTGTCCCGGCCTCCGCAGTACCAATACATATATGAAGAAGATGTCGACACGGACCCGCTACCCGAACCCTCGTGGTGCGAGCGCGGGTGGATTGAGGTGGCTGGCTGTACTTTAACTACTCTGCTGATGATCCCGCTCTGTTTTGTAATGTGCCCTTGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Snapin_Pallidin

Protein Analysis

286

Amino Acids

32.4

Weight (kDa)

4.72

Isoelectric Point (pI)

66.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	162 - 212	1.2e-09	Ring finger domain
zf-RING_11	PF17123	162 - 192	8.7e-08	RING-like zinc finger
zf-RING_UBOX	PF13445	163 - 207	8e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79070 AT1G79070
fragaria_vesca	FvH4_3g16000 FvH4_3g16000 FvH4_3g16000
malus_domestica	MD05G1216100.v1.1
prunus_persica	Prupe.4G143100_v2.0.a1 Prupe.4G143100_v2.0.a1
pyrus_communis	pycom10g17130
rosa_chinensis	RchiOBHm_Chr5g0026941
rosa_laevigata	RLG00000032971
rosa_multiflora	Rmu_sc0008732.1_g000002
rosa_roxburghii	Rroxscaffold_1G00052530
rosa_rugosa	Rorug05G0096000 Rorug05G0096100 Rorug05G0096200 Rorug05G0096300
rosa_samantha	Rh5AG189700 Rh5BG187200 Rh5CG206900 Rh5DG188900
rosa_wichuraiana	Rw5G017260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	832
AccI	GTMKAC	2 cut(s)	692, 741
AccII	CGCG	1 cut(s)	780
AciI	CCGC	4 cut(s)	710, 752, 780, 830
AclWI	GGATC	1 cut(s)	820
AcoI	YGGCCR	1 cut(s)	660
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	599
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	2 cut(s)	716, 805
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	2 cut(s)	60, 337
AhlI	ACTAGT	1 cut(s)	155
AloI	GAACNNNNNNTCC	2 cut(s)	403, 435
AluBI	AGCT	5 cut(s)	69, 100, 181, 223, 444
AluI	AGCT	5 cut(s)	69, 100, 181, 223, 444
Alw21I	GWGCWC	1 cut(s)	620
AlwI	GGATC	1 cut(s)	820
AoxI	GGCC	6 cut(s)	330, 356, 505, 520, 660, 704
ApeKI	GCWGC	4 cut(s)	69, 72, 120, 301
ApoI	RAATTY	1 cut(s)	92
AspLEI	GCGC	2 cut(s)	402, 780
AspS9I	GGNCC	3 cut(s)	505, 521, 748
AsuC2I	CCSGG	2 cut(s)	664, 703
AsuHPI	GGTGA	1 cut(s)	103
AsuII	TTCGAA	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	748
BaeGI	GKGCMC	2 cut(s)	220, 851
BauI	CACGAG	3 cut(s)	213, 619, 766
BbsI	GAAGAC	1 cut(s)	599
Bbv12I	GWGCWC	1 cut(s)	620
BbvI	GCAGC	4 cut(s)	56, 84, 132, 313
BccI	CCATC	2 cut(s)	652, 679
BceAI	ACGGC	1 cut(s)	329
BcnI	CCSGG	2 cut(s)	664, 703
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	70
BisI	GCNGC	4 cut(s)	70, 73, 121, 302
BlsI	GCNGC	4 cut(s)	71, 74, 122, 303
Bme1390I	CCNGG	2 cut(s)	664, 703
Bme18I	GGWCC	1 cut(s)	748
BmgT120I	GGNCC	3 cut(s)	505, 521, 748
BmiI	GGNNCC	3 cut(s)	523, 669, 750
BmrFI	CCNGG	2 cut(s)	664, 703
BmsI	GCATC	1 cut(s)	626
BpiI	GAAGAC	1 cut(s)	599
BpmI	CTGGAG	1 cut(s)	521
Bpu14I	TTCGAA	1 cut(s)	422
BpuMI	CCSGG	2 cut(s)	664, 703
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	663
BsaXI	ACNNNNNCTCC	2 cut(s)	470, 500
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	663
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	3 cut(s)	42, 254, 611
BseRI	GAGGAG	4 cut(s)	488, 491, 494, 497
BseSI	GKGCMC	2 cut(s)	220, 851
BseXI	GCAGC	4 cut(s)	56, 84, 132, 313
BseYI	CCCAGC	1 cut(s)	219
BsgI	GTGCAG	2 cut(s)	244, 413
Bsh1236I	CGCG	1 cut(s)	780
BshFI	GGCC	6 cut(s)	332, 358, 507, 522, 662, 706
BsiHKAI	GWGCWC	1 cut(s)	620
BsiSI	CCGG	3 cut(s)	355, 663, 703
BslFI	GGGAC	5 cut(s)	272, 280, 332, 609, 685
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmFI	GGGAC	5 cut(s)	272, 280, 332, 609, 685
BsmI	GAATGC	1 cut(s)	573
BsnI	GGCC	6 cut(s)	332, 358, 507, 522, 662, 706
Bsp119I	TTCGAA	1 cut(s)	422
Bsp1286I	GDGCHC	3 cut(s)	220, 620, 851
Bsp143I	GATC	2 cut(s)	87, 825
BspACI	CCGC	4 cut(s)	710, 752, 780, 830
BspANI	GGCC	6 cut(s)	332, 358, 507, 522, 662, 706
BspCNI	CTCAG	3 cut(s)	43, 253, 610
BspFNI	CGCG	1 cut(s)	780
BspLI	GGNNCC	3 cut(s)	523, 669, 750
BspMAI	CTGCAG	1 cut(s)	74
BspPI	GGATC	1 cut(s)	820
BspQI	GCTCTTC	1 cut(s)	107
BspT104I	TTCGAA	1 cut(s)	422
BsrBI	CCGCTC	1 cut(s)	832
BssECI	CCNNGG	1 cut(s)	663
BssMI	GATC	2 cut(s)	87, 825
BssNI	GRCGYC	1 cut(s)	285
BssSI	CACGAG	3 cut(s)	213, 619, 766
Bst2BI	CACGAG	3 cut(s)	213, 619, 766
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	3 cut(s)	107, 453, 596
BstACI	GRCGYC	1 cut(s)	285
BstBI	TTCGAA	1 cut(s)	422
BstC8I	GCNNGC	3 cut(s)	306, 776, 799
BstDEI	CTNAG	3 cut(s)	51, 240, 597
BstEII	GGTNACC	1 cut(s)	109
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstFNI	CGCG	1 cut(s)	780
BstHHI	GCGC	2 cut(s)	402, 780
BstKTI	GATC	2 cut(s)	90, 828
BstMBI	GATC	2 cut(s)	87, 825
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 528
BstPI	GGTNACC	1 cut(s)	109
BstSCI	CCNGG	2 cut(s)	662, 701
BstSFI	CTRYAG	1 cut(s)	70
BstSLI	GKGCMC	2 cut(s)	220, 851
BstUI	CGCG	1 cut(s)	780
BstV1I	GCAGC	4 cut(s)	56, 84, 132, 313
BstV2I	GAAGAC	1 cut(s)	599
BsuRI	GGCC	6 cut(s)	332, 358, 507, 522, 662, 706
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	2 cut(s)	48, 409
Cac8I	GCNNGC	3 cut(s)	306, 776, 799
CfoI	GCGC	2 cut(s)	402, 780
Cfr13I	GGNCC	3 cut(s)	505, 521, 748
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	715, 804
CviAII	CATG	3 cut(s)	249, 280, 563
CviQI	GTAC	2 cut(s)	715, 804
DdeI	CTNAG	3 cut(s)	51, 240, 597
DpnI	GATC	2 cut(s)	89, 827
DpnII	GATC	2 cut(s)	87, 825
EaeI	YGGCCR	1 cut(s)	660
Eam1104I	CTCTTC	3 cut(s)	107, 453, 596
EarI	CTCTTC	3 cut(s)	107, 453, 596
Eco147I	AGGCCT	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	748
Eco57I	CTGAAG	1 cut(s)	599
Eco91I	GGTNACC	1 cut(s)	109
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	505
EcoO65I	GGTNACC	1 cut(s)	109
FaeI	CATG	3 cut(s)	252, 283, 566
FaiI	YATR	8 cut(s)	21, 250, 281, 564, 725, 727, 729, 859
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	5 cut(s)	272, 280, 332, 609, 685
FatI	CATG	3 cut(s)	248, 279, 562
FauI	CCCGC	3 cut(s)	759, 773, 837
FblI	GTMKAC	2 cut(s)	692, 741
Fnu4HI	GCNGC	4 cut(s)	70, 73, 121, 302
Fsp4HI	GCNGC	4 cut(s)	70, 73, 121, 302
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	2 cut(s)	401, 779
GluI	GCNGC	4 cut(s)	70, 73, 121, 302
GsaI	CCCAGC	1 cut(s)	223
GsuI	CTGGAG	1 cut(s)	521
HaeIII	GGCC	6 cut(s)	332, 358, 507, 522, 662, 706
HapII	CCGG	3 cut(s)	355, 663, 703
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	2 cut(s)	402, 780
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	3 cut(s)	252, 283, 566
Hin6I	GCGC	2 cut(s)	400, 778
HinP1I	GCGC	2 cut(s)	400, 778
HincII	GTYRAC	2 cut(s)	693, 742
HindII	GTYRAC	2 cut(s)	693, 742
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	4 cut(s)	238, 268, 595, 604
HpaII	CCGG	3 cut(s)	355, 663, 703
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	2 cut(s)	693, 742
Hpy188I	TCNGA	4 cut(s)	129, 514, 579, 600
Hpy188III	TCNNGA	3 cut(s)	85, 242, 500
Hpy8I	GTNNAC	2 cut(s)	693, 742
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	5 cut(s)	72, 261, 317, 394, 573
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 528
HpyF3I	CTNAG	3 cut(s)	51, 240, 597
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	252, 283, 566
HspAI	GCGC	2 cut(s)	400, 778
Kzo9I	GATC	2 cut(s)	87, 825
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	2 cut(s)	397, 667
Lsp1109I	GCAGC	4 cut(s)	56, 84, 132, 313
LweI	GCATC	1 cut(s)	626
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	4 cut(s)	109, 385, 532, 608
MalI	GATC	2 cut(s)	89, 827
MbiI	CCGCTC	1 cut(s)	832
MboI	GATC	2 cut(s)	87, 825
MhlI	GDGCHC	3 cut(s)	220, 620, 851
MluCI	AATT	3 cut(s)	92, 164, 642
MlyI	GAGTC	4 cut(s)	232, 262, 589, 613
MmeI	TCCRAC	1 cut(s)	107
MseI	TTAA	2 cut(s)	453, 809
MspI	CCGG	3 cut(s)	355, 663, 703
MspR9I	CCNGG	2 cut(s)	664, 703
Mva1269I	GAATGC	1 cut(s)	573
MvnI	CGCG	1 cut(s)	780
MwoI	GCNNNNNNNGC	2 cut(s)	314, 528
NciI	CCSGG	2 cut(s)	664, 703
NdeII	GATC	2 cut(s)	87, 825
NlaIII	CATG	3 cut(s)	252, 283, 566
NlaIV	GGNNCC	3 cut(s)	523, 669, 750
NmuCI	GTSAC	3 cut(s)	109, 385, 608
NspV	TTCGAA	1 cut(s)	422
PceI	AGGCCT	1 cut(s)	332
PciSI	GCTCTTC	1 cut(s)	107
PctI	GAATGC	1 cut(s)	573
PflFI	GACNNNGTC	1 cut(s)	697
PkrI	GCNGC	4 cut(s)	71, 74, 122, 303
PleI	GAGTC	4 cut(s)	232, 262, 589, 612
PpsI	GAGTC	4 cut(s)	232, 262, 589, 612
PspEI	GGTNACC	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	219
PspN4I	GGNNCC	3 cut(s)	523, 669, 750
PspPI	GGNCC	3 cut(s)	505, 521, 748
PstI	CTGCAG	1 cut(s)	74
PsyI	GACNNNGTC	1 cut(s)	697
RsaI	GTAC	2 cut(s)	716, 805
RsaNI	GTAC	2 cut(s)	715, 804
SalI	GTCGAC	2 cut(s)	691, 740
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	453, 809
SatI	GCNGC	4 cut(s)	70, 73, 121, 302
Sau3AI	GATC	2 cut(s)	87, 825
Sau96I	GGNCC	3 cut(s)	505, 521, 748
SchI	GAGTC	4 cut(s)	232, 262, 589, 613
ScrFI	CCNGG	2 cut(s)	664, 703
SduI	GDGCHC	3 cut(s)	220, 620, 851
SetI	ASST	9 cut(s)	57, 71, 81, 102, 111, 183, 225, 446, 795
SfaNI	GCATC	1 cut(s)	626
SfcI	CTRYAG	1 cut(s)	70
SfuI	TTCGAA	1 cut(s)	422
SinI	GGWCC	1 cut(s)	748
SpeI	ACTAGT	1 cut(s)	155
Sse9I	AATT	3 cut(s)	92, 164, 642
SseBI	AGGCCT	1 cut(s)	332
SsiI	CCGC	4 cut(s)	710, 752, 780, 830
SspMI	CTAG	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	662, 701
TaaI	ACNGT	1 cut(s)	391
TaqI	TCGA	6 cut(s)	105, 327, 422, 634, 692, 741
TasI	AATT	3 cut(s)	92, 164, 642
TatI	WGTACW	1 cut(s)	803
Tru1I	TTAA	2 cut(s)	453, 809
Tru9I	TTAA	2 cut(s)	453, 809
TscAI	CASTG	2 cut(s)	55, 409
TseFI	GTSAC	3 cut(s)	109, 385, 608
TseI	GCWGC	4 cut(s)	69, 72, 120, 301
Tsp45I	GTSAC	3 cut(s)	109, 385, 608
TspDTI	ATGAA	3 cut(s)	159, 429, 744
TspGWI	ACGGA	1 cut(s)	761
TspRI	CASTG	2 cut(s)	55, 409
Tth111I	GACNNNGTC	1 cut(s)	697
VpaK11BI	GGWCC	1 cut(s)	748
XagI	CCTNNNNNAGG	1 cut(s)	50
XapI	RAATTY	1 cut(s)	92
XmiI	GTMKAC	2 cut(s)	692, 741
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.