Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005036

Physical Location & Seq

Genomic Coordinates Forward (+)

29798851 .. 29800571

Gene Structure 1721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G79220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGCATTCGACCGGGAAGAGAAATTTCTTAGCTGTTATCAGATTATTGTTTACTAGTTCGAGCTTGGTCAGAAAGGCTGGTTGTAGAAATCTCATTTCTGCTACCTTTACCACCAGGTGTTCGACGTTATGCCTGAATGAATCTGAAGAATGCATTGAGGATTCTGATCTATCGTCTAGGAGAAAAAAATTTGATTATGTTGGAGAAGTTGGTGAAAAAGAGAAAGTGAGAGATATTACTAGTAGTCCTTTACAAGTTTTACGAAGATGGGGTTGTGATGATGATGAAATATCCAAGCTTTTTACTCGTAGGCCTGCTTTGCAGAGAGCCAATGTTGCTCAGTTAGAGTTTAAGTTAAGCCTTCTTAAGCCACTGGGAATCACGTCTTCAGACCTTGTGAAGATTCTTAACTGTCGTCCTAGGTTCTTTAGTTGCCGTCTTGTCCTTGATGAAAGGATCAACTACTTCATGGAGATTTTGGGGTCAAAAGAGGTGTTGCGCAGAGTCATTATCCGGAATCCGTCACTCATGTTGTATGACCTCGATGACAAGATCAAACCCGCGATAGAATACTACAAAGGGTTGGGCTTTAGCCAACAGGATCTTGTCGCAATGTTGATATCGCGACCCACGTTGATTCCAAGAACAAACTTTAACAATGAGAAGTTTGAATACATTGAGAAAACTGGAGTCACCAGAGAATCCAAGATGTTTAAATATGTTGCAGTCATCATCGGGGTCTCGAGGATGGAGACAATCGAAGAGAAAGTTAGAAACTTGGAAAAGTTTGGGTTCTCGGAAGAAGAGATTTGGCACCTGTATGGAAAATGCCCAATCCTTCTCTCTCTCTCTGTTGAGAAAGTTCAGAGAAACATGACTTTCGTCATAGCCTCGATGAAACTTCCAGCTCATTCCGTGGTTAAGCACCCTTGTTTGCTTCTCCTCAACCTCGAGTCTCGTCTAAAACCTCGTGCGGATCTCGTTAAGAGAGTCTTGGAAATGCGTCTAAAGCCATTGATAAAAGAAGTGAGCATTTTCAGAGCGGTAAGGATGAGCGAGAAACGGTTCTTGAAGGTTTATGTAATGTGTCATCCACAAGATATTGCAACCGAGCTGATGGAGTTTTACGAGAAATCCAAAAACATGAAACGTTTAGCTGAGAAATCCAAGAAATACATCCGTAAAGGATTCCCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

399

Amino Acids

46.46

Weight (kDa)

9.64

Isoelectric Point (pI)

51.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	84 - 147	1.8e-12	mTERF
mTERF	PF02536	149 - 357	8.9e-51	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79220
fragaria_vesca	FvH4_3g15040 FvH4_3g15050
malus_domestica	MD10G1208300.v1.1 MD10G1208400.v1.1
prunus_persica	Prupe.4G134600_v2.0.a1 Prupe.4G134700_v2.0.a1
pyrus_communis	pycom10g17720
rosa_chinensis	RchiOBHm_Chr5g0024801 RchiOBHm_Chr5g0024811
rosa_laevigata	RLG00000032815 RLG00000032816
rosa_multiflora	Rmu_sc0001757.1_g000014 Rmu_sc0001757.1_g000016 Rmu_sc0009744.1_g000008 Rmu_sc0016384.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054570 Rroxscaffold_1G00054580
rosa_rugosa	Rorug05G0084500 Rorug05G0084600
rosa_samantha	Rh5AG176300 Rh5AG176400 Rh5BG174000 Rh5BG174100 Rh5CG191000 Rh5CG191100 Rh5DG175600 Rh5DG175700
rosa_wichuraiana	Rw5G015980 Rw5G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	500
AccB1I	GGYRCC	1 cut(s)	813
AccBSI	CCGCTC	1 cut(s)	1043
AccII	CGCG	2 cut(s)	563, 625
AccIII	TCCGGA	1 cut(s)	513
AciI	CCGC	3 cut(s)	561, 974, 1043
AclI	AACGTT	1 cut(s)	1150
AclWI	GGATC	3 cut(s)	464, 609, 984
AcsI	RAATTY	2 cut(s)	22, 188
AcuI	CTGAAG	2 cut(s)	165, 372
AdeI	CACNNNGTG	1 cut(s)	117
AflII	CTTAAG	1 cut(s)	365
AgsI	TTSAA	2 cut(s)	671, 1072
AhlI	ACTAGT	2 cut(s)	53, 239
AjiI	CACGTC	1 cut(s)	384
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	6 cut(s)	32, 63, 298, 908, 1114, 1157
AluI	AGCT	6 cut(s)	32, 63, 298, 908, 1114, 1157
Alw26I	GTCTC	3 cut(s)	745, 746, 960
AlwI	GGATC	3 cut(s)	464, 609, 984
Ama87I	CYCGRG	2 cut(s)	742, 950
Aor13HI	TCCGGA	1 cut(s)	513
AoxI	GGCC	1 cut(s)	311
ApoI	RAATTY	2 cut(s)	22, 188
Asp700I	GAANNNNTTC	1 cut(s)	1064
AspA2I	CCTAGG	1 cut(s)	419
AspLEI	GCGC	1 cut(s)	501
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	224, 685
AvaI	CYCGRG	2 cut(s)	742, 950
AvrII	CCTAGG	1 cut(s)	419
BanI	GGYRCC	1 cut(s)	813
BarI	GAAGNNNNNNTAC	2 cut(s)	656, 688
BauI	CACGAG	1 cut(s)	969
BbsI	GAAGAC	1 cut(s)	378
BccI	CCATC	3 cut(s)	261, 742, 1111
BceAI	ACGGC	1 cut(s)	420
BciT130I	CCWGG	1 cut(s)	115
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	3 cut(s)	745, 746, 960
BcuI	ACTAGT	2 cut(s)	53, 239
BfaI	CTAG	4 cut(s)	54, 177, 240, 420
BfrI	CTTAAG	1 cut(s)	365
BlnI	CCTAGG	1 cut(s)	419
Bme1390I	CCNGG	2 cut(s)	13, 115
BmeT110I	CYCGRG	2 cut(s)	742, 950
BmgBI	CACGTC	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	815
BmrFI	CCNGG	2 cut(s)	13, 115
BmrI	ACTGGG	1 cut(s)	383
BmuI	ACTGGG	1 cut(s)	383
BoxI	GACNNNNGTC	1 cut(s)	881
BpiI	GAAGAC	1 cut(s)	378
BpmI	CTGGAG	1 cut(s)	708
BpuMI	CCSGG	1 cut(s)	13
BsaBI	GATNNNNATC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	745
BsaJI	CCNNGG	2 cut(s)	419, 915
BsaWI	WCCGGW	1 cut(s)	513
Bse1I	ACTGG	2 cut(s)	378, 691
Bse3DI	GCAATG	1 cut(s)	618
Bse8I	GATNNNNATC	1 cut(s)	165
BseAI	TCCGGA	1 cut(s)	513
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	2 cut(s)	419, 915
BseGI	GGATG	4 cut(s)	753, 1056, 1090, 1176
BseJI	GATNNNNATC	1 cut(s)	165
BseMI	GCAATG	1 cut(s)	618
BseMII	CTCAG	2 cut(s)	353, 1149
BseNI	ACTGG	2 cut(s)	378, 691
BseRI	GAGGAG	1 cut(s)	932
Bsh1236I	CGCG	2 cut(s)	563, 625
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	313
BshNI	GGYRCC	1 cut(s)	813
BsiEI	CGRYCG	1 cut(s)	12
BsiHKCI	CYCGRG	2 cut(s)	742, 950
BsiSI	CCGG	2 cut(s)	12, 514
BsmAI	GTCTC	3 cut(s)	745, 746, 960
BsmI	GAATGC	2 cut(s)	4, 155
BsnI	GGCC	1 cut(s)	313
Bso31I	GGTCTC	1 cut(s)	745
BsoBI	CYCGRG	2 cut(s)	742, 950
Bsp13I	TCCGGA	1 cut(s)	513
Bsp143I	GATC	5 cut(s)	166, 456, 552, 601, 976
Bsp68I	TCGCGA	1 cut(s)	625
BspACI	CCGC	3 cut(s)	561, 974, 1043
BspANI	GGCC	1 cut(s)	313
BspCNI	CTCAG	2 cut(s)	352, 1150
BspEI	TCCGGA	1 cut(s)	513
BspFNI	CGCG	2 cut(s)	563, 625
BspLI	GGNNCC	1 cut(s)	815
BspPI	GGATC	3 cut(s)	464, 609, 984
BspT107I	GGYRCC	1 cut(s)	813
BspTI	CTTAAG	1 cut(s)	365
BspTNI	GGTCTC	1 cut(s)	745
BsrBI	CCGCTC	1 cut(s)	1043
BsrDI	GCAATG	1 cut(s)	618
BsrI	ACTGG	2 cut(s)	378, 691
BssECI	CCNNGG	2 cut(s)	419, 915
BssMI	GATC	5 cut(s)	166, 456, 552, 601, 976
BssSI	CACGAG	1 cut(s)	969
BssT1I	CCWWGG	1 cut(s)	419
Bst2BI	CACGAG	1 cut(s)	969
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	2 cut(s)	413, 1065
Bst6I	CTCTTC	3 cut(s)	11, 756, 798
BstAFI	CTTAAG	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	3 cut(s)	28, 339, 1158
BstDSI	CCRYGG	1 cut(s)	915
BstF5I	GGATG	4 cut(s)	753, 1056, 1090, 1176
BstFNI	CGCG	2 cut(s)	563, 625
BstHHI	GCGC	1 cut(s)	501
BstKTI	GATC	5 cut(s)	169, 459, 555, 604, 979
BstMAI	GTCTC	3 cut(s)	745, 746, 960
BstMBI	GATC	5 cut(s)	166, 456, 552, 601, 976
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	3 cut(s)	319, 335, 1009
BstNI	CCWGG	1 cut(s)	115
BstPAI	GACNNNNGTC	1 cut(s)	881
BstSCI	CCNGG	2 cut(s)	11, 113
BstUI	CGCG	2 cut(s)	563, 625
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	2 cut(s)	601, 976
BstYI	RGATCY	2 cut(s)	601, 976
BsuRI	GGCC	1 cut(s)	313
BtgI	CCRYGG	1 cut(s)	915
BtrI	CACGTC	1 cut(s)	384
BtsCI	GGATG	4 cut(s)	753, 1056, 1090, 1176
BtsIMutI	CAGTG	1 cut(s)	371
BtuMI	TCGCGA	1 cut(s)	625
Cac8I	GCNNGC	1 cut(s)	315
CfoI	GCGC	1 cut(s)	501
CseI	GACGC	1 cut(s)	992
CsiI	ACCWGGT	1 cut(s)	113
CviAII	CATG	4 cut(s)	469, 529, 874, 1144
DdeI	CTNAG	3 cut(s)	28, 339, 1158
DpnI	GATC	5 cut(s)	168, 458, 554, 603, 978
DpnII	GATC	5 cut(s)	166, 456, 552, 601, 976
DraI	TTTAAA	1 cut(s)	715
DraIII	CACNNNGTG	1 cut(s)	117
Eam1104I	CTCTTC	3 cut(s)	11, 756, 798
EarI	CTCTTC	3 cut(s)	11, 756, 798
Eco130I	CCWWGG	1 cut(s)	419
Eco147I	AGGCCT	1 cut(s)	313
Eco31I	GGTCTC	1 cut(s)	745
Eco32I	GATATC	1 cut(s)	621
Eco57I	CTGAAG	2 cut(s)	165, 372
Eco88I	CYCGRG	2 cut(s)	742, 950
EcoRII	CCWGG	1 cut(s)	113
EcoRV	GATATC	1 cut(s)	621
EcoT14I	CCWWGG	1 cut(s)	419
EcoT22I	ATGCAT	2 cut(s)	6, 155
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	4 cut(s)	472, 532, 877, 1147
FalI	AAGNNNNNCTT	2 cut(s)	977, 1009
FatI	CATG	4 cut(s)	468, 528, 873, 1143
FauI	CCCGC	1 cut(s)	568
FokI	GGATG	4 cut(s)	760, 1063, 1077, 1163
FspBI	CTAG	4 cut(s)	54, 177, 240, 420
FspI	TGCGCA	1 cut(s)	500
GlaI	GCGC	1 cut(s)	500
GsuI	CTGGAG	1 cut(s)	708
HaeIII	GGCC	1 cut(s)	313
HapII	CCGG	2 cut(s)	12, 514
HgaI	GACGC	1 cut(s)	992
HhaI	GCGC	1 cut(s)	501
Hin1II	CATG	4 cut(s)	472, 532, 877, 1147
Hin6I	GCGC	1 cut(s)	499
HinP1I	GCGC	1 cut(s)	499
HindIII	AAGCTT	1 cut(s)	296
HpaII	CCGG	2 cut(s)	12, 514
HphI	GGTGA	2 cut(s)	224, 685
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	8 cut(s)	41, 71, 145, 166, 391, 799, 867, 1040
Hpy188III	TCNNGA	4 cut(s)	514, 624, 742, 1069
Hpy8I	GTNNAC	1 cut(s)	51
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	3 cut(s)	371, 848, 1066
HpyCH4III	ACNGT	2 cut(s)	413, 1065
HpyCH4IV	ACGT	4 cut(s)	125, 383, 632, 1150
HpyCH4V	TGCA	5 cut(s)	4, 153, 322, 725, 1106
HpyF10VI	GCNNNNNNNGC	3 cut(s)	319, 335, 1009
HpyF3I	CTNAG	3 cut(s)	28, 339, 1158
HpySE526I	ACGT	4 cut(s)	125, 383, 632, 1150
Hsp92II	CATG	4 cut(s)	472, 532, 877, 1147
HspAI	GCGC	1 cut(s)	499
Kpn2I	TCCGGA	1 cut(s)	513
Kzo9I	GATC	5 cut(s)	166, 456, 552, 601, 976
MabI	ACCWGGT	1 cut(s)	113
MaeI	CTAG	4 cut(s)	54, 177, 240, 420
MaeII	ACGT	4 cut(s)	125, 383, 632, 1150
MaeIII	GTNAC	2 cut(s)	522, 691
MalI	GATC	5 cut(s)	168, 458, 554, 603, 978
MbiI	CCGCTC	1 cut(s)	1043
MboI	GATC	5 cut(s)	166, 456, 552, 601, 976
MboII	GAAGA	8 cut(s)	28, 158, 276, 378, 412, 773, 812, 815
MflI	RGATCY	2 cut(s)	601, 976
MluCI	AATT	2 cut(s)	22, 188
MlyI	GAGTC	4 cut(s)	513, 699, 962, 999
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	8 cut(s)	151, 484, 551, 738, 901, 953, 959, 978
Mph1103I	ATGCAT	2 cut(s)	6, 155
MroI	TCCGGA	1 cut(s)	513
MroXI	GAANNNNTTC	1 cut(s)	1064
MseI	TTAA	8 cut(s)	351, 356, 366, 408, 654, 714, 921, 984
MslI	CAYNNNNRTG	1 cut(s)	819
MspCI	CTTAAG	1 cut(s)	365
MspI	CCGG	2 cut(s)	12, 514
MspR9I	CCNGG	2 cut(s)	13, 115
Mva1269I	GAATGC	2 cut(s)	4, 155
MvaI	CCWGG	1 cut(s)	115
MvnI	CGCG	2 cut(s)	563, 625
MwoI	GCNNNNNNNGC	3 cut(s)	319, 335, 1009
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	5 cut(s)	166, 456, 552, 601, 976
NlaIII	CATG	4 cut(s)	472, 532, 877, 1147
NlaIV	GGNNCC	1 cut(s)	815
NmuCI	GTSAC	2 cut(s)	522, 691
NruI	TCGCGA	1 cut(s)	625
NsbI	TGCGCA	1 cut(s)	500
NsiI	ATGCAT	2 cut(s)	6, 155
PaeR7I	CTCGAG	2 cut(s)	742, 950
PceI	AGGCCT	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	1 cut(s)	629
PctI	GAATGC	2 cut(s)	4, 155
PdmI	GAANNNNTTC	1 cut(s)	1064
PfeI	GAWTC	8 cut(s)	140, 161, 378, 403, 517, 637, 701, 1188
PleI	GAGTC	4 cut(s)	512, 698, 961, 998
PpsI	GAGTC	4 cut(s)	512, 698, 961, 998
PshAI	GACNNNNGTC	1 cut(s)	881
Psp1406I	AACGTT	1 cut(s)	1150
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	815
PspXI	VCTCGAGB	1 cut(s)	950
PsuI	RGATCY	2 cut(s)	601, 976
RruI	TCGCGA	1 cut(s)	625
RseI	CAYNNNNRTG	1 cut(s)	819
SaqAI	TTAA	8 cut(s)	351, 356, 366, 408, 654, 714, 921, 984
Sau3AI	GATC	5 cut(s)	166, 456, 552, 601, 976
SchI	GAGTC	4 cut(s)	513, 699, 962, 999
ScrFI	CCNGG	2 cut(s)	13, 115
SexAI	ACCWGGT	1 cut(s)	113
Sfr274I	CTCGAG	2 cut(s)	742, 950
SlaI	CTCGAG	2 cut(s)	742, 950
SmiMI	CAYNNNNRTG	1 cut(s)	819
SmlI	CTYRAG	3 cut(s)	365, 742, 950
SmoI	CTYRAG	3 cut(s)	365, 742, 950
SpeI	ACTAGT	2 cut(s)	53, 239
Sse9I	AATT	2 cut(s)	22, 188
SseBI	AGGCCT	1 cut(s)	313
SsiI	CCGC	3 cut(s)	561, 974, 1043
SspMI	CTAG	4 cut(s)	54, 177, 240, 420
StuI	AGGCCT	1 cut(s)	313
StyD4I	CCNGG	2 cut(s)	11, 113
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	2 cut(s)	413, 1065
TaiI	ACGT	4 cut(s)	128, 386, 635, 1153
TaqI	TCGA	8 cut(s)	8, 59, 122, 543, 743, 759, 893, 951
TasI	AATT	2 cut(s)	22, 188
TfiI	GAWTC	8 cut(s)	140, 161, 378, 403, 517, 637, 701, 1188
Tru1I	TTAA	8 cut(s)	351, 356, 366, 408, 654, 714, 921, 984
Tru9I	TTAA	8 cut(s)	351, 356, 366, 408, 654, 714, 921, 984
TscAI	CASTG	1 cut(s)	378
TseFI	GTSAC	2 cut(s)	522, 691
Tsp45I	GTSAC	2 cut(s)	522, 691
TspDTI	ATGAA	6 cut(s)	153, 300, 457, 465, 911, 1160
TspGWI	ACGGA	3 cut(s)	510, 904, 1169
TspRI	CASTG	1 cut(s)	378
Vha464I	CTTAAG	1 cut(s)	365
XapI	RAATTY	2 cut(s)	22, 188
XhoI	CTCGAG	2 cut(s)	742, 950
XmaJI	CCTAGG	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	1064
XspI	CTAG	4 cut(s)	54, 177, 240, 420
Zsp2I	ATGCAT	2 cut(s)	6, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.