Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001757.1

Orthogroup ID

OG0005036

Physical Location & Seq

Genomic Coordinates Reverse (-)

67575 .. 68321

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001757.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgaaatccagactccaatctttactaaagctccgtaatttacttccagctttgccatatctgatccctttgcccaaatgcttcccctcacccaagtactgcattttcatgcccaccacgtattcgacgatttgcctgacccaacaagaaggtgtaggaaaagatactagcgaccaacccgaggactctgtgcgagtcctgaagagattgggctgtagtgatgctgacataaccaagattttcacaaaggcatctgctctaaagcacgctgacatagaccagcttaactggaaactcgaactcctaactgggttgggacttaccgcacctgagctggtgaagatagtctgtggccggccccggattctcgtttctcgactcacctgctttgctgagcagcttaagtactttaatgaattgtttggttcaagggagttgcttgtcagggccattttgaggaacccgtctctcctgacctatgaccttcacaagacaatcaaacccaccattgagatgtatagagtagttggtcttgatatggagggcttgatccaaatgattctagcgcggccaacattgatctcaagaacttcatttagtgaagagaagatggagtttatccgcaagaccggggtgtcaaaaactgccacaatgtataagtatgtagtcacactcattggcgtttcgcgccttgaaactatccgtcagaagatagcaaactttgagaagtttggtatgtcagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

248

Amino Acids

28.19

Weight (kDa)

9.48

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79220
fragaria_vesca	FvH4_3g15040 FvH4_3g15050
malus_domestica	MD10G1208300.v1.1 MD10G1208400.v1.1
prunus_persica	Prupe.4G134600_v2.0.a1 Prupe.4G134700_v2.0.a1
pyrus_communis	pycom10g17720
rosa_chinensis	RchiOBHm_Chr5g0024801 RchiOBHm_Chr5g0024811
rosa_laevigata	RLG00000032815 RLG00000032816
rosa_multiflora	Rmu_sc0001757.1_g000014 Rmu_sc0001757.1_g000016 Rmu_sc0009744.1_g000008 Rmu_sc0016384.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054570 Rroxscaffold_1G00054580
rosa_rugosa	Rorug05G0084500 Rorug05G0084600
rosa_samantha	Rh5AG176300 Rh5AG176400 Rh5BG174000 Rh5BG174100 Rh5CG191000 Rh5CG191100 Rh5DG175600 Rh5DG175700
rosa_wichuraiana	Rw5G015980 Rw5G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	392
AasI	GACNNNNNNGTC	1 cut(s)	634
Acc36I	ACCTGC	1 cut(s)	392
AccII	CGCG	2 cut(s)	568, 688
AciI	CCGC	3 cut(s)	324, 568, 622
AclWI	GGATC	2 cut(s)	58, 544
AcoI	YGGCCR	2 cut(s)	352, 569
AcuI	CTGAAG	1 cut(s)	221
AfaI	GTAC	2 cut(s)	98, 407
AfiI	CCNNNNNNNGG	2 cut(s)	181, 456
AflII	CTTAAG	1 cut(s)	401
AgsI	TTSAA	2 cut(s)	429, 695
AluBI	AGCT	5 cut(s)	31, 50, 283, 334, 400
AluI	AGCT	5 cut(s)	31, 50, 283, 334, 400
Alw26I	GTCTC	1 cut(s)	471
AlwI	GGATC	2 cut(s)	58, 544
Ama87I	CYCGRG	1 cut(s)	179
AoxI	GGCC	4 cut(s)	352, 356, 447, 569
ApeKI	GCWGC	1 cut(s)	397
AspLEI	GCGC	2 cut(s)	568, 690
AspS9I	GGNCC	2 cut(s)	357, 447
AsuC2I	CCSGG	2 cut(s)	361, 631
AsuHPI	GGTGA	3 cut(s)	81, 349, 373
AvaI	CYCGRG	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	1 cut(s)	604
BcgI	CGANNNNNNTGC	2 cut(s)	366, 400
BcnI	CCSGG	2 cut(s)	361, 631
BcoDI	GTCTC	1 cut(s)	471
BfaI	CTAG	2 cut(s)	168, 563
BfmI	CTRYAG	1 cut(s)	214
BfrI	CTTAAG	1 cut(s)	401
BfuAI	ACCTGC	1 cut(s)	392
BisI	GCNGC	2 cut(s)	398, 569
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	2 cut(s)	399, 570
BmcAI	AGTACT	2 cut(s)	98, 407
Bme1390I	CCNGG	2 cut(s)	361, 631
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	2 cut(s)	357, 447
BmiI	GGNNCC	2 cut(s)	359, 461
BmrFI	CCNGG	2 cut(s)	361, 631
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	2 cut(s)	211, 260
BmuI	ACTGGG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	330
Bpu1102I	GCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	568
BpuMI	CCSGG	2 cut(s)	361, 631
BsaAI	YACGTR	1 cut(s)	120
BsaJI	CCNNGG	3 cut(s)	180, 359, 630
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 285, 315
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 456
Bse118I	RCCGGY	1 cut(s)	354
Bse1I	ACTGG	2 cut(s)	293, 313
BseDI	CCNNGG	3 cut(s)	180, 359, 630
BseLI	CCNNNNNNNGG	2 cut(s)	181, 456
BseMII	CTCAG	2 cut(s)	321, 384
BseNI	ACTGG	2 cut(s)	293, 313
BseXI	GCAGC	1 cut(s)	409
Bsh1236I	CGCG	2 cut(s)	568, 688
BshFI	GGCC	4 cut(s)	354, 358, 449, 571
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	3 cut(s)	355, 361, 630
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	2 cut(s)	181, 456
BsmAI	GTCTC	1 cut(s)	471
BsmBI	CGTCTC	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	4 cut(s)	354, 358, 449, 571
BsoBI	CYCGRG	1 cut(s)	179
Bsp143I	GATC	3 cut(s)	63, 549, 579
Bsp1720I	GCTNAGC	1 cut(s)	393
BspACI	CCGC	3 cut(s)	324, 568, 622
BspANI	GGCC	4 cut(s)	354, 358, 449, 571
BspCNI	CTCAG	2 cut(s)	322, 385
BspFNI	CGCG	2 cut(s)	568, 688
BspLI	GGNNCC	2 cut(s)	359, 461
BspMI	ACCTGC	1 cut(s)	392
BspPI	GGATC	2 cut(s)	58, 544
BspTI	CTTAAG	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	354
BsrI	ACTGG	2 cut(s)	293, 313
BssAI	RCCGGY	1 cut(s)	354
BssECI	CCNNGG	3 cut(s)	180, 359, 630
BssMI	GATC	3 cut(s)	63, 549, 579
Bst6I	CTCTTC	2 cut(s)	197, 597
BstAFI	CTTAAG	1 cut(s)	401
BstBAI	YACGTR	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	267, 356
BstDEI	CTNAG	2 cut(s)	330, 393
BstFNI	CGCG	2 cut(s)	568, 688
BstHHI	GCGC	2 cut(s)	568, 690
BstKTI	GATC	3 cut(s)	66, 552, 582
BstMAI	GTCTC	1 cut(s)	471
BstMBI	GATC	3 cut(s)	63, 549, 579
BstMWI	GCNNNNNNNGC	1 cut(s)	687
BstSCI	CCNGG	2 cut(s)	359, 629
BstSFI	CTRYAG	1 cut(s)	214
BstUI	CGCG	2 cut(s)	568, 688
BstV1I	GCAGC	1 cut(s)	409
BsuRI	GGCC	4 cut(s)	354, 358, 449, 571
BveI	ACCTGC	1 cut(s)	392
Cac8I	GCNNGC	2 cut(s)	267, 356
CfoI	GCGC	2 cut(s)	568, 690
Cfr10I	RCCGGY	1 cut(s)	354
Cfr13I	GGNCC	2 cut(s)	357, 447
Csp6I	GTAC	2 cut(s)	97, 406
CviAII	CATG	1 cut(s)	109
CviQI	GTAC	2 cut(s)	97, 406
DdeI	CTNAG	2 cut(s)	330, 393
DpnI	GATC	3 cut(s)	65, 551, 581
DpnII	GATC	3 cut(s)	63, 549, 579
DrdI	GACNNNNNNGTC	1 cut(s)	634
DseDI	GACNNNNNNGTC	1 cut(s)	634
EaeI	YGGCCR	2 cut(s)	352, 569
Eam1104I	CTCTTC	2 cut(s)	197, 597
EarI	CTCTTC	2 cut(s)	197, 597
Eco57I	CTGAAG	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	179
Esp3I	CGTCTC	1 cut(s)	471
FaeI	CATG	1 cut(s)	112
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	398, 569
FseI	GGCCGGCC	1 cut(s)	358
Fsp4HI	GCNGC	2 cut(s)	398, 569
FspBI	CTAG	2 cut(s)	168, 563
GlaI	GCGC	2 cut(s)	567, 689
GluI	GCNGC	2 cut(s)	398, 569
HaeIII	GGCC	4 cut(s)	354, 358, 449, 571
HapII	CCGG	3 cut(s)	355, 361, 630
HhaI	GCGC	2 cut(s)	568, 690
Hin1II	CATG	1 cut(s)	112
Hin6I	GCGC	2 cut(s)	566, 688
HinP1I	GCGC	2 cut(s)	566, 688
HinfI	GANTC	6 cut(s)	12, 185, 195, 364, 378, 559
HpaII	CCGG	3 cut(s)	355, 361, 630
HphI	GGTGA	3 cut(s)	81, 349, 373
Hpy188I	TCNGA	3 cut(s)	63, 708, 742
Hpy188III	TCNNGA	6 cut(s)	9, 199, 375, 472, 533, 585
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	143, 494
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	1 cut(s)	102
HpyF10VI	GCNNNNNNNGC	1 cut(s)	687
HpyF3I	CTNAG	2 cut(s)	330, 393
HpySE526I	ACGT	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	112
HspAI	GCGC	2 cut(s)	566, 688
KroI	GCCGGC	1 cut(s)	354
KroNI	GCCGGC	1 cut(s)	356
Kzo9I	GATC	3 cut(s)	63, 549, 579
LmnI	GCTCC	1 cut(s)	36
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	2 cut(s)	211, 260
MaeI	CTAG	2 cut(s)	168, 563
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	667
MalI	GATC	3 cut(s)	65, 551, 581
MboI	GATC	3 cut(s)	63, 549, 579
MboII	GAAGA	5 cut(s)	214, 352, 614, 619, 721
MluCI	AATT	2 cut(s)	37, 416
MlyI	GAGTC	4 cut(s)	6, 179, 204, 372
MnlI	CCTC	4 cut(s)	97, 175, 450, 535
MroNI	GCCGGC	1 cut(s)	354
MseI	TTAA	3 cut(s)	285, 402, 411
MslI	CAYNNNNRTG	2 cut(s)	107, 512
MspCI	CTTAAG	1 cut(s)	401
MspI	CCGG	3 cut(s)	355, 361, 630
MspR9I	CCNGG	2 cut(s)	361, 631
MvnI	CGCG	2 cut(s)	568, 688
MwoI	GCNNNNNNNGC	1 cut(s)	687
NaeI	GCCGGC	1 cut(s)	356
NciI	CCSGG	2 cut(s)	361, 631
NdeII	GATC	3 cut(s)	63, 549, 579
NgoMIV	GCCGGC	1 cut(s)	354
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	2 cut(s)	359, 461
NmuCI	GTSAC	1 cut(s)	667
PaqCI	CACCTGC	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PdiI	GCCGGC	1 cut(s)	356
PfeI	GAWTC	2 cut(s)	364, 559
PkrI	GCNGC	2 cut(s)	399, 570
PleI	GAGTC	4 cut(s)	6, 179, 203, 372
PpsI	GAGTC	4 cut(s)	6, 179, 203, 372
Ppu21I	YACGTR	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	359, 461
PspPI	GGNCC	2 cut(s)	357, 447
RigI	GGCCGGCC	1 cut(s)	358
RsaI	GTAC	2 cut(s)	98, 407
RsaNI	GTAC	2 cut(s)	97, 406
RseI	CAYNNNNRTG	2 cut(s)	107, 512
SaqAI	TTAA	3 cut(s)	285, 402, 411
SatI	GCNGC	2 cut(s)	398, 569
Sau3AI	GATC	3 cut(s)	63, 549, 579
Sau96I	GGNCC	2 cut(s)	357, 447
ScaI	AGTACT	2 cut(s)	98, 407
SchI	GAGTC	4 cut(s)	6, 179, 204, 372
ScrFI	CCNGG	2 cut(s)	361, 631
SfaNI	GCATC	2 cut(s)	211, 260
SfcI	CTRYAG	1 cut(s)	214
SmiMI	CAYNNNNRTG	2 cut(s)	107, 512
SmlI	CTYRAG	2 cut(s)	401, 583
SmoI	CTYRAG	2 cut(s)	401, 583
Sse9I	AATT	2 cut(s)	37, 416
SsiI	CCGC	3 cut(s)	324, 568, 622
SspMI	CTAG	2 cut(s)	168, 563
StyD4I	CCNGG	2 cut(s)	359, 629
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	3 cut(s)	125, 297, 376
TasI	AATT	2 cut(s)	37, 416
TatI	WGTACW	2 cut(s)	96, 405
TauI	GCSGC	1 cut(s)	571
TfiI	GAWTC	2 cut(s)	364, 559
Tru1I	TTAA	3 cut(s)	285, 402, 411
Tru9I	TTAA	3 cut(s)	285, 402, 411
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	1 cut(s)	397
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	4 cut(s)	17, 97, 429, 582
TspGWI	ACGGA	2 cut(s)	23, 692
Vha464I	CTTAAG	1 cut(s)	401
XspI	CTAG	2 cut(s)	168, 563
ZrmI	AGTACT	2 cut(s)	98, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.