Rh5AG176400
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0005036
Physical Location & Seq
Reverse (-)
19695324 .. 19696466
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG176400.1

Sequence Viewer

Length: 1143 bp
ATGAAATCCAGACTCCAATCTTTACTAAAGCTCCGTAATTTACTTCCAGCTTCGCCATGTCTGATCCCTTTGCCCAAATGCTTCCCCTCACCCAAGTCCTGCATTTTCATGCCCACCACGTATTCGACGATTTGCCTGACCCAACAAGAAGGTGTAGGAAAAGATACTAGCGACCAACCCGAGGACTCTGTGCGAGTCCTGAAGAGATTGGGCTGTAGCGATGCTGACGTAACCAAGATTTTCACAAAGGCATCTGCTCTAAAGCACGCTGACATTGACCAGCTTAACTGGAAACTCGAACTCCTAACTGGGTTGGGACTTACCGCACCTGAGATGGTGAAGATAGTCTGTGGCCGGCCCCGGATTCTCGTTTCTCGGCTCACCTGCTTTGCTGAGCAGCTTAAGTACTTCAATGAATTGTTTGGTTCAAGGGAGTTGCTTGTCAGAGCCATTTTGAGGAACCCGTCTCTCCTGACCTATGACCTTCACAAGACAATCAAACCCACCATTGAGATGTATAGAGTAGTTGGTCTTGATATGGAGGGCTTGATCCAAATGATTCTAGCGCGGCCGACATTGATCTCAAGAACTTCATTTAGTGAAGAGAAGATGGAGTTTATCCGCAAGACCGGGGTGTCAAAAACTGCCACAATGTATAAGTATGTAGTCACACTCATTGGCGTTTCGCGCCTTGAAACTATCCGTCAGAAGATAGCAAACTTTGAGAAGTTTGGTATGTCAGAAGAAGAGATTTTCCGTCTTTTTGGGAAATCTCCCTATGTTATGTCACTGTCAATCGATAAGGTTCAGAGGAACATGACTTTCATCTTGTCACAATTGAAGCTTCCTGCTAAAATAGTTCTTGATCGCCCAAGTTTGCTATACTTGAATCTGGAGAATGTGATGAAGCCACGAGCACTTCTCGCAGGGAAGATGCACGAAATGGGACTTGAACCGCAGATTACAGGTCCTATGATCTTGACTGTAATGAGGATGAATGAGAAGAGATTTCTGAAGGCATTTGTTAGTCATCAACCGATGGAGGTTGCTGATGAATTGATGGAGTACTACGAAAATGTGAAGGGTGTGAAGCGATTGGCAGAAGCCTCGAAGAAGAACTGTAATTATGGATTTCCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

380

Amino Acids

43.29

Weight (kDa)

9.48

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 134 - 338 5.9e-30 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 392
AasI GACNNNNNNGTC 1 cut(s) 634
Acc36I ACCTGC 1 cut(s) 392
AccII CGCG 2 cut(s) 568, 688
AciI CCGC 4 cut(s) 324, 568, 622, 956
AclWI GGATC 2 cut(s) 58, 544
AcoI YGGCCR 2 cut(s) 352, 569
AcuI CTGAAG 2 cut(s) 221, 1034
AfaI GTAC 2 cut(s) 407, 1067
AfiI CCNNNNNNNGG 2 cut(s) 181, 456
AflII CTTAAG 1 cut(s) 401
AgsI TTSAA 6 cut(s) 412, 429, 695, 841, 889, 953
AluBI AGCT 5 cut(s) 31, 50, 283, 400, 844
AluI AGCT 5 cut(s) 31, 50, 283, 400, 844
Alw21I GWGCWC 1 cut(s) 919
Alw26I GTCTC 1 cut(s) 471
AlwI GGATC 2 cut(s) 58, 544
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 3 cut(s) 352, 356, 569
ApeKI GCWGC 1 cut(s) 397
AspLEI GCGC 2 cut(s) 568, 690
AspS9I GGNCC 2 cut(s) 357, 968
AsuC2I CCSGG 2 cut(s) 361, 631
AsuHPI GGTGA 3 cut(s) 81, 349, 373
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 1 cut(s) 968
BauI CACGAG 1 cut(s) 912
Bbv12I GWGCWC 1 cut(s) 919
BbvI GCAGC 1 cut(s) 409
BccI CCATC 4 cut(s) 328, 604, 1033, 1054
BcgI CGANNNNNNTGC 2 cut(s) 1089, 1123
BcnI CCSGG 2 cut(s) 361, 631
BcoDI GTCTC 1 cut(s) 471
BfaI CTAG 2 cut(s) 168, 563
BfmI CTRYAG 1 cut(s) 214
BfrI CTTAAG 1 cut(s) 401
BfuAI ACCTGC 1 cut(s) 392
BisI GCNGC 2 cut(s) 398, 569
BlpI GCTNAGC 1 cut(s) 393
BlsI GCNGC 2 cut(s) 399, 570
BmcAI AGTACT 2 cut(s) 407, 1067
Bme1390I CCNGG 2 cut(s) 361, 631
Bme18I GGWCC 1 cut(s) 968
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 2 cut(s) 357, 968
BmiI GGNNCC 2 cut(s) 359, 461
BmrFI CCNGG 2 cut(s) 361, 631
BmrI ACTGGG 1 cut(s) 318
BmsI GCATC 3 cut(s) 211, 260, 924
BmuI ACTGGG 1 cut(s) 318
BplI GAGNNNNNCTC 2 cut(s) 906, 938
BpmI CTGGAG 1 cut(s) 914
Bpu1102I GCTNAGC 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 568
BpuMI CCSGG 2 cut(s) 361, 631
Bsa29I ATCGAT 1 cut(s) 798
BsaAI YACGTR 1 cut(s) 120
BsaJI CCNNGG 3 cut(s) 180, 359, 630
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 285, 315
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 456
Bse118I RCCGGY 1 cut(s) 354
Bse1I ACTGG 2 cut(s) 293, 313
BseCI ATCGAT 1 cut(s) 798
BseDI CCNNGG 3 cut(s) 180, 359, 630
BseGI GGATG 1 cut(s) 999
BseLI CCNNNNNNNGG 2 cut(s) 181, 456
BseMII CTCAG 2 cut(s) 321, 384
BseNI ACTGG 2 cut(s) 293, 313
BseX3I CGGCCG 1 cut(s) 569
BseXI GCAGC 1 cut(s) 409
Bsh1236I CGCG 2 cut(s) 568, 688
Bsh1285I CGRYCG 1 cut(s) 572
BshFI GGCC 3 cut(s) 354, 358, 571
BshVI ATCGAT 1 cut(s) 798
BsiEI CGRYCG 1 cut(s) 572
BsiHKAI GWGCWC 1 cut(s) 919
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 3 cut(s) 355, 361, 630
BslFI GGGAC 2 cut(s) 330, 960
BslI CCNNNNNNNGG 2 cut(s) 181, 456
BsmAI GTCTC 1 cut(s) 471
BsmBI CGTCTC 1 cut(s) 471
BsmFI GGGAC 2 cut(s) 330, 960
BsnI GGCC 3 cut(s) 354, 358, 571
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 919
Bsp143I GATC 5 cut(s) 63, 549, 579, 865, 975
Bsp1720I GCTNAGC 1 cut(s) 393
BspACI CCGC 4 cut(s) 324, 568, 622, 956
BspANI GGCC 3 cut(s) 354, 358, 571
BspCNI CTCAG 2 cut(s) 322, 385
BspDI ATCGAT 1 cut(s) 798
BspFNI CGCG 2 cut(s) 568, 688
BspLI GGNNCC 2 cut(s) 359, 461
BspMI ACCTGC 1 cut(s) 392
BspPI GGATC 2 cut(s) 58, 544
BspTI CTTAAG 1 cut(s) 401
BsrFI RCCGGY 1 cut(s) 354
BsrI ACTGG 2 cut(s) 293, 313
BssAI RCCGGY 1 cut(s) 354
BssECI CCNNGG 3 cut(s) 180, 359, 630
BssMI GATC 5 cut(s) 63, 549, 579, 865, 975
BssSI CACGAG 1 cut(s) 912
Bst2BI CACGAG 1 cut(s) 912
Bst4CI ACNGT 3 cut(s) 792, 985, 1121
Bst6I CTCTTC 4 cut(s) 197, 597, 741, 998
BstAFI CTTAAG 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 120
BstC8I GCNNGC 2 cut(s) 267, 356
BstDEI CTNAG 2 cut(s) 330, 393
BstF5I GGATG 1 cut(s) 999
BstFNI CGCG 2 cut(s) 568, 688
BstHHI GCGC 2 cut(s) 568, 690
BstKTI GATC 5 cut(s) 66, 552, 582, 868, 978
BstMAI GTCTC 1 cut(s) 471
BstMBI GATC 5 cut(s) 63, 549, 579, 865, 975
BstMCI CGRYCG 1 cut(s) 572
BstMWI GCNNNNNNNGC 2 cut(s) 687, 923
BstSCI CCNGG 2 cut(s) 359, 629
BstSFI CTRYAG 1 cut(s) 214
BstUI CGCG 2 cut(s) 568, 688
BstV1I GCAGC 1 cut(s) 409
BstZI CGGCCG 1 cut(s) 569
Bsu15I ATCGAT 1 cut(s) 798
BsuRI GGCC 3 cut(s) 354, 358, 571
BsuTUI ATCGAT 1 cut(s) 798
BtgZI GCGATG 1 cut(s) 234
BtsCI GGATG 1 cut(s) 999
BtsIMutI CAGTG 1 cut(s) 788
BveI ACCTGC 1 cut(s) 392
Cac8I GCNNGC 2 cut(s) 267, 356
CfoI GCGC 2 cut(s) 568, 690
Cfr10I RCCGGY 1 cut(s) 354
Cfr13I GGNCC 2 cut(s) 357, 968
ClaI ATCGAT 1 cut(s) 798
Csp6I GTAC 2 cut(s) 406, 1066
CviAII CATG 3 cut(s) 57, 109, 817
CviQI GTAC 2 cut(s) 406, 1066
DdeI CTNAG 2 cut(s) 330, 393
DpnI GATC 5 cut(s) 65, 551, 581, 867, 977
DpnII GATC 5 cut(s) 63, 549, 579, 865, 975
DrdI GACNNNNNNGTC 1 cut(s) 634
DseDI GACNNNNNNGTC 1 cut(s) 634
EaeI YGGCCR 2 cut(s) 352, 569
EagI CGGCCG 1 cut(s) 569
Eam1104I CTCTTC 4 cut(s) 197, 597, 741, 998
EarI CTCTTC 4 cut(s) 197, 597, 741, 998
EclXI CGGCCG 1 cut(s) 569
Eco47I GGWCC 1 cut(s) 968
Eco52I CGGCCG 1 cut(s) 569
Eco57I CTGAAG 2 cut(s) 221, 1034
Eco88I CYCGRG 1 cut(s) 179
EcoO109I RGGNCCY 1 cut(s) 968
Esp3I CGTCTC 1 cut(s) 471
FaeI CATG 3 cut(s) 60, 112, 820
FaqI GGGAC 2 cut(s) 330, 960
FatI CATG 3 cut(s) 56, 108, 816
Fnu4HI GCNGC 2 cut(s) 398, 569
FokI GGATG 1 cut(s) 1006
FseI GGCCGGCC 1 cut(s) 358
Fsp4HI GCNGC 2 cut(s) 398, 569
FspBI CTAG 2 cut(s) 168, 563
GlaI GCGC 2 cut(s) 567, 689
GluI GCNGC 2 cut(s) 398, 569
GsuI CTGGAG 1 cut(s) 914
HaeIII GGCC 3 cut(s) 354, 358, 571
HapII CCGG 3 cut(s) 355, 361, 630
HhaI GCGC 2 cut(s) 568, 690
Hin1II CATG 3 cut(s) 60, 112, 820
Hin6I GCGC 2 cut(s) 566, 688
HinP1I GCGC 2 cut(s) 566, 688
HindIII AAGCTT 1 cut(s) 842
HinfI GANTC 6 cut(s) 12, 185, 195, 364, 559, 889
HpaII CCGG 3 cut(s) 355, 361, 630
HphI GGTGA 3 cut(s) 81, 349, 373
Hpy188I TCNGA 7 cut(s) 63, 446, 708, 742, 810, 1014, 1142
Hpy188III TCNNGA 8 cut(s) 9, 199, 472, 533, 585, 863, 893, 979
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 4 cut(s) 143, 494, 1009, 1075
HpyCH4III ACNGT 3 cut(s) 792, 985, 1121
HpyCH4IV ACGT 2 cut(s) 119, 228
HpyCH4V TGCA 2 cut(s) 102, 937
HpyF10VI GCNNNNNNNGC 2 cut(s) 687, 923
HpyF3I CTNAG 2 cut(s) 330, 393
HpySE526I ACGT 2 cut(s) 119, 228
Hsp92II CATG 3 cut(s) 60, 112, 820
HspAI GCGC 2 cut(s) 566, 688
KroI GCCGGC 1 cut(s) 354
KroNI GCCGGC 1 cut(s) 356
Kzo9I GATC 5 cut(s) 63, 549, 579, 865, 975
LmnI GCTCC 1 cut(s) 36
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 3 cut(s) 211, 260, 924
MaeI CTAG 2 cut(s) 168, 563
MaeII ACGT 2 cut(s) 119, 228
MaeIII GTNAC 4 cut(s) 229, 667, 786, 831
MalI GATC 5 cut(s) 65, 551, 581, 867, 977
MboI GATC 5 cut(s) 63, 549, 579, 865, 975
MfeI CAATTG 1 cut(s) 836
MhlI GDGCHC 1 cut(s) 919
MluCI AATT 5 cut(s) 37, 416, 836, 1055, 1123
MlyI GAGTC 3 cut(s) 6, 179, 204
MnlI CCTC 8 cut(s) 97, 175, 450, 535, 804, 984, 1036, 1117
MroNI GCCGGC 1 cut(s) 354
MseI TTAA 2 cut(s) 285, 402
MslI CAYNNNNRTG 2 cut(s) 107, 512
MspCI CTTAAG 1 cut(s) 401
MspI CCGG 3 cut(s) 355, 361, 630
MspR9I CCNGG 2 cut(s) 361, 631
MunI CAATTG 1 cut(s) 836
MvnI CGCG 2 cut(s) 568, 688
MwoI GCNNNNNNNGC 2 cut(s) 687, 923
NaeI GCCGGC 1 cut(s) 356
NciI CCSGG 2 cut(s) 361, 631
NdeII GATC 5 cut(s) 63, 549, 579, 865, 975
NgoMIV GCCGGC 1 cut(s) 354
NlaIII CATG 3 cut(s) 60, 112, 820
NlaIV GGNNCC 2 cut(s) 359, 461
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 3 cut(s) 667, 786, 831
PaqCI CACCTGC 1 cut(s) 392
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PdiI GCCGGC 1 cut(s) 356
PfeI GAWTC 3 cut(s) 364, 559, 889
PkrI GCNGC 2 cut(s) 399, 570
PleI GAGTC 3 cut(s) 6, 179, 203
PpsI GAGTC 3 cut(s) 6, 179, 203
Ppu21I YACGTR 1 cut(s) 120
PpuMI RGGWCCY 1 cut(s) 968
Psp5II RGGWCCY 1 cut(s) 968
PspN4I GGNNCC 2 cut(s) 359, 461
PspPI GGNCC 2 cut(s) 357, 968
PspPPI RGGWCCY 1 cut(s) 968
RigI GGCCGGCC 1 cut(s) 358
RsaI GTAC 2 cut(s) 407, 1067
RsaNI GTAC 2 cut(s) 406, 1066
RseI CAYNNNNRTG 2 cut(s) 107, 512
SaqAI TTAA 2 cut(s) 285, 402
SatI GCNGC 2 cut(s) 398, 569
Sau3AI GATC 5 cut(s) 63, 549, 579, 865, 975
Sau96I GGNCC 2 cut(s) 357, 968
ScaI AGTACT 2 cut(s) 407, 1067
SchI GAGTC 3 cut(s) 6, 179, 204
ScrFI CCNGG 2 cut(s) 361, 631
SduI GDGCHC 1 cut(s) 919
SfaNI GCATC 3 cut(s) 211, 260, 924
SfcI CTRYAG 1 cut(s) 214
SinI GGWCC 1 cut(s) 968
SmiMI CAYNNNNRTG 2 cut(s) 107, 512
SmlI CTYRAG 2 cut(s) 401, 583
SmoI CTYRAG 2 cut(s) 401, 583
Sse9I AATT 5 cut(s) 37, 416, 836, 1055, 1123
SsiI CCGC 4 cut(s) 324, 568, 622, 956
SspMI CTAG 2 cut(s) 168, 563
StyD4I CCNGG 2 cut(s) 359, 629
TaaI ACNGT 3 cut(s) 792, 985, 1121
TaiI ACGT 2 cut(s) 122, 231
TaqI TCGA 4 cut(s) 125, 297, 798, 1109
TasI AATT 5 cut(s) 37, 416, 836, 1055, 1123
TatI WGTACW 2 cut(s) 405, 1065
TauI GCSGC 1 cut(s) 571
TfiI GAWTC 3 cut(s) 364, 559, 889
Tru1I TTAA 2 cut(s) 285, 402
Tru9I TTAA 2 cut(s) 285, 402
TscAI CASTG 1 cut(s) 795
TseFI GTSAC 3 cut(s) 667, 786, 831
TseI GCWGC 1 cut(s) 397
Tsp45I GTSAC 3 cut(s) 667, 786, 831
TspDTI ATGAA 8 cut(s) 17, 97, 429, 582, 814, 920, 1010, 1068
TspGWI ACGGA 3 cut(s) 23, 692, 746
TspRI CASTG 1 cut(s) 795
Vha464I CTTAAG 1 cut(s) 401
VpaK11BI GGWCC 1 cut(s) 968
XspI CTAG 2 cut(s) 168, 563
ZrmI AGTACT 2 cut(s) 407, 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.