Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005036

Physical Location & Seq

Genomic Coordinates Reverse (-)

7436570 .. 7438649

Gene Structure 2080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G134600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGCAATCTAGAGTTGGTTCTTTAGTTAAGCTCCGAAATTTATTGACAGCCTCTCGAAATTTTTTATCTTTTCCCAAAACTCTGATCTCAACAACTTCTCTACTTTTCCCGCCCGCCACCTATTCGACCATTTGCCAAGCCCAGGAAGAAAGTGTAGGAGAATATGTTAGAGACCAACCCAAGAGCTCTGAAGAAATTCTTAAGAACTGGGGTTGTAGTGATACTGACATATCCAAGATGTTCACACGGCGGCCTGCTTTGCGGAATGCTGACCTTGATCAGCTTCAGTTCAAACTAAACATTCTAAGTGGCTTGGGCATTAGTGCATCTGAGCTTGTGAAGATCATCAATTGTCGGCCCCGGTTTCTCAGTTATCGAATTAATCATTGTTTTGATGAGCGGCTTGAGTACTTTATGAGATTGTTTGAGTCGAGGGAAGTTCTTGTCAAAGCCATTGTAAAGAACCCATCTCTATTGACCTATGACTTTCACGATAAAATCAAGCCTGCCATCGCACTATACGAAGGAATGGGTCTTAGCACGAGTGACTTGACCCAAATTCTTCTATCACGGCCCACATTGATCCCAAGAACTTCATTTAATGATGAAAAGATGGAATATATACGAAAAACCAGGCTTTCGAATCATTCAACCATGTATAAGTATGTTGTCGCAATCATTGGCATTTCACGCCTTGAAACTATCCGTCAGAAAGTTGCAAATTTGGAGAAGTTTGGTTTCTCAGAAGATGAGATTTTTGGTCTTTTGGCAAGGTCTCCCCTTGTGCTTACACTGTCAATTGATAAGGTTCAGAGGAACATGACTTTCATTATAGGAAAAATGAAACTTCCCGCCCCAGTGATTCTTGAGTATCCCTTTTTTCTGTACACAAATCTGGAGGCTGTTTTAAAGCCACGAGTATTTCTTGCAGAGAAGATGCAGGAAATGGATCTTGACTTGCAGATTAAAGGCCCTGTGATGCTGACGGCACTGAGGATGACAGAGAAGAGGTTTCTGAAAGCATTTGTTAATTGTCACCCAAAGGATGTTGCTGATGAATTGATGGAATTTTATATAAATGCAAAGGGTGTGAAGCGATTGGCAGAAGACTACTCCAAGAAGAACTTCCAGCAAGGATTTCCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

383

Amino Acids

44.01

Weight (kDa)

9.34

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79220
fragaria_vesca	FvH4_3g15040 FvH4_3g15050
malus_domestica	MD10G1208300.v1.1 MD10G1208400.v1.1
prunus_persica	Prupe.4G134600_v2.0.a1 Prupe.4G134700_v2.0.a1
pyrus_communis	pycom10g17720
rosa_chinensis	RchiOBHm_Chr5g0024801 RchiOBHm_Chr5g0024811
rosa_laevigata	RLG00000032815 RLG00000032816
rosa_multiflora	Rmu_sc0001757.1_g000014 Rmu_sc0001757.1_g000016 Rmu_sc0009744.1_g000008 Rmu_sc0016384.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054570 Rroxscaffold_1G00054580
rosa_rugosa	Rorug05G0084500 Rorug05G0084600
rosa_samantha	Rh5AG176300 Rh5AG176400 Rh5BG174000 Rh5BG174100 Rh5CG191000 Rh5CG191100 Rh5DG175600 Rh5DG175700
rosa_wichuraiana	Rw5G015980 Rw5G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	400
AciI	CCGC	6 cut(s)	110, 114, 250, 262, 400, 852
AclWI	GGATC	2 cut(s)	577, 957
AcsI	RAATTY	6 cut(s)	37, 58, 195, 558, 721, 1067
AcuI	CTGAAG	2 cut(s)	210, 269
AfaI	GTAC	2 cut(s)	410, 887
AfiI	CCNNNNNNNGG	1 cut(s)	142
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	3 cut(s)	292, 651, 698
AjnI	CCWGG	2 cut(s)	141, 632
AjuI	GAANNNNNNNTTGG	2 cut(s)	1109, 1141
AluBI	AGCT	4 cut(s)	31, 186, 283, 334
AluI	AGCT	4 cut(s)	31, 186, 283, 334
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	2 cut(s)	165, 780
AlwI	GGATC	2 cut(s)	577, 957
AoxI	GGCC	4 cut(s)	251, 356, 572, 970
ApoI	RAATTY	6 cut(s)	37, 58, 195, 558, 721, 1067
AseI	ATTAAT	1 cut(s)	381
Asp700I	GAANNNNTTC	2 cut(s)	195, 1124
AspS9I	GGNCC	3 cut(s)	357, 573, 971
AsuC2I	CCSGG	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	1028
AsuII	TTCGAA	1 cut(s)	641
BanII	GRGCYC	1 cut(s)	188
BauI	CACGAG	2 cut(s)	541, 915
BbsI	GAAGAC	1 cut(s)	1113
Bbv12I	GWGCWC	1 cut(s)	188
BccI	CCATC	4 cut(s)	475, 518, 607, 1057
BceAI	ACGGC	3 cut(s)	263, 587, 1002
BciT130I	CCWGG	2 cut(s)	143, 634
BciVI	GTATCC	1 cut(s)	882
BclI	TGATCA	1 cut(s)	277
BcnI	CCSGG	1 cut(s)	361
BcoDI	GTCTC	2 cut(s)	165, 780
BfaI	CTAG	1 cut(s)	9
BfrI	CTTAAG	1 cut(s)	200
BfuI	GTATCC	1 cut(s)	882
BisI	GCNGC	2 cut(s)	251, 401
BlsI	GCNGC	2 cut(s)	252, 402
BmcAI	AGTACT	1 cut(s)	410
Bme1390I	CCNGG	3 cut(s)	143, 361, 634
BmgT120I	GGNCC	3 cut(s)	357, 573, 971
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	3 cut(s)	143, 361, 634
BmrI	ACTGGG	2 cut(s)	217, 851
BmsI	GCATC	3 cut(s)	335, 927, 969
BmuI	ACTGGG	2 cut(s)	217, 851
BpiI	GAAGAC	1 cut(s)	1113
BpmI	CTGGAG	1 cut(s)	917
Bpu14I	TTCGAA	1 cut(s)	641
BpuEI	CTTGAG	2 cut(s)	425, 887
BpuMI	CCSGG	1 cut(s)	361
BsaI	GGTCTC	2 cut(s)	165, 780
BsaJI	CCNNGG	2 cut(s)	141, 359
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	2 cut(s)	212, 857
BseBI	CCWGG	2 cut(s)	143, 634
BseDI	CCNNGG	2 cut(s)	141, 359
BseGI	GGATG	2 cut(s)	1002, 1051
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	4 cut(s)	321, 382, 756, 983
BseNI	ACTGG	2 cut(s)	212, 857
BshFI	GGCC	4 cut(s)	253, 358, 574, 972
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	361
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	2 cut(s)	165, 780
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	4 cut(s)	253, 358, 574, 972
Bso31I	GGTCTC	2 cut(s)	165, 780
Bsp119I	TTCGAA	1 cut(s)	641
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp1407I	TGTACA	1 cut(s)	885
Bsp143I	GATC	5 cut(s)	84, 277, 342, 582, 949
BspACI	CCGC	6 cut(s)	110, 114, 250, 262, 400, 852
BspANI	GGCC	4 cut(s)	253, 358, 574, 972
BspCNI	CTCAG	4 cut(s)	322, 381, 755, 984
BspLI	GGNNCC	1 cut(s)	359
BspPI	GGATC	2 cut(s)	577, 957
BspT104I	TTCGAA	1 cut(s)	641
BspTI	CTTAAG	1 cut(s)	200
BspTNI	GGTCTC	2 cut(s)	165, 780
BsrBI	CCGCTC	1 cut(s)	400
BsrGI	TGTACA	1 cut(s)	885
BsrI	ACTGG	2 cut(s)	212, 857
BssECI	CCNNGG	2 cut(s)	141, 359
BssMI	GATC	5 cut(s)	84, 277, 342, 582, 949
BssSI	CACGAG	2 cut(s)	541, 915
Bst2BI	CACGAG	2 cut(s)	541, 915
Bst2UI	CCWGG	2 cut(s)	143, 634
Bst4CI	ACNGT	1 cut(s)	795
Bst6I	CTCTTC	1 cut(s)	1001
BstAFI	CTTAAG	1 cut(s)	200
BstAUI	TGTACA	1 cut(s)	885
BstBI	TTCGAA	1 cut(s)	641
BstC8I	GCNNGC	3 cut(s)	114, 255, 507
BstDEI	CTNAG	6 cut(s)	305, 330, 368, 536, 742, 992
BstF5I	GGATG	2 cut(s)	1002, 1051
BstKTI	GATC	5 cut(s)	87, 280, 345, 585, 952
BstMAI	GTCTC	2 cut(s)	165, 780
BstMBI	GATC	5 cut(s)	84, 277, 342, 582, 949
BstMWI	GCNNNNNNNGC	2 cut(s)	259, 690
BstNI	CCWGG	2 cut(s)	143, 634
BstSCI	CCNGG	3 cut(s)	141, 359, 632
BstV2I	GAAGAC	1 cut(s)	1113
BstX2I	RGATCY	1 cut(s)	949
BstYI	RGATCY	1 cut(s)	949
BsuI	GTATCC	1 cut(s)	882
BsuRI	GGCC	4 cut(s)	253, 358, 574, 972
BtgZI	GCGATG	1 cut(s)	496
BtsCI	GGATG	2 cut(s)	1002, 1051
BtsIMutI	CAGTG	3 cut(s)	791, 864, 989
Cac8I	GCNNGC	3 cut(s)	114, 255, 507
Cfr13I	GGNCC	3 cut(s)	357, 573, 971
Csp6I	GTAC	2 cut(s)	409, 886
CviAII	CATG	2 cut(s)	655, 820
CviQI	GTAC	2 cut(s)	409, 886
DdeI	CTNAG	6 cut(s)	305, 330, 368, 536, 742, 992
DpnI	GATC	5 cut(s)	86, 279, 344, 584, 951
DpnII	GATC	5 cut(s)	84, 277, 342, 582, 949
DraI	TTTAAA	1 cut(s)	909
Eam1104I	CTCTTC	1 cut(s)	1001
EarI	CTCTTC	1 cut(s)	1001
Ecl136II	GAGCTC	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	188
Eco31I	GGTCTC	2 cut(s)	165, 780
Eco53kI	GAGCTC	1 cut(s)	186
Eco57I	CTGAAG	2 cut(s)	210, 269
EcoICRI	GAGCTC	1 cut(s)	186
EcoO109I	RGGNCCY	1 cut(s)	971
EcoRII	CCWGG	2 cut(s)	141, 632
EcoT38I	GRGCYC	1 cut(s)	188
FaeI	CATG	2 cut(s)	658, 823
FalI	AAGNNNNNCTT	4 cut(s)	183, 215, 1109, 1141
FatI	CATG	2 cut(s)	654, 819
FauI	CCCGC	3 cut(s)	117, 121, 859
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	2 cut(s)	251, 401
FokI	GGATG	2 cut(s)	1009, 1058
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	251, 401
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	2 cut(s)	251, 401
GsuI	CTGGAG	1 cut(s)	917
HaeIII	GGCC	4 cut(s)	253, 358, 574, 972
HapII	CCGG	1 cut(s)	361
Hin1II	CATG	2 cut(s)	658, 823
HinfI	GANTC	3 cut(s)	428, 643, 862
HpaII	CCGG	1 cut(s)	361
HphI	GGTGA	1 cut(s)	1028
Hpy166II	GTNNAC	2 cut(s)	243, 888
Hpy188I	TCNGA	8 cut(s)	35, 84, 190, 331, 711, 745, 813, 1017
Hpy188III	TCNNGA	6 cut(s)	9, 54, 491, 866, 896, 953
Hpy8I	GTNNAC	2 cut(s)	243, 888
HpyAV	CCTTC	1 cut(s)	518
HpyCH4III	ACNGT	1 cut(s)	795
HpyCH4V	TGCA	7 cut(s)	4, 326, 719, 929, 940, 961, 1082
HpyF10VI	GCNNNNNNNGC	2 cut(s)	259, 690
HpyF3I	CTNAG	6 cut(s)	305, 330, 368, 536, 742, 992
Hsp92II	CATG	2 cut(s)	658, 823
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	5 cut(s)	84, 277, 342, 582, 949
LmnI	GCTCC	1 cut(s)	36
LweI	GCATC	3 cut(s)	335, 927, 969
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	545, 1034
MalI	GATC	5 cut(s)	86, 279, 344, 584, 951
MbiI	CCGCTC	1 cut(s)	400
MboI	GATC	5 cut(s)	84, 277, 342, 582, 949
MboII	GAAGA	9 cut(s)	158, 203, 352, 554, 758, 946, 1018, 1118, 1132
MfeI	CAATTG	2 cut(s)	349, 798
MflI	RGATCY	1 cut(s)	949
MhlI	GDGCHC	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	437
MnlI	CCTC	6 cut(s)	61, 426, 807, 892, 987, 1002
MroXI	GAANNNNTTC	2 cut(s)	195, 1124
MseI	TTAA	7 cut(s)	27, 201, 381, 600, 908, 966, 1029
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	1 cut(s)	361
MspR9I	CCNGG	3 cut(s)	143, 361, 634
MunI	CAATTG	2 cut(s)	349, 798
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	2 cut(s)	143, 634
MwoI	GCNNNNNNNGC	2 cut(s)	259, 690
NciI	CCSGG	1 cut(s)	361
NdeII	GATC	5 cut(s)	84, 277, 342, 582, 949
NlaIII	CATG	2 cut(s)	658, 823
NlaIV	GGNNCC	1 cut(s)	359
NmuCI	GTSAC	2 cut(s)	545, 1034
NspV	TTCGAA	1 cut(s)	641
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PctI	GAATGC	1 cut(s)	271
PdmI	GAANNNNTTC	2 cut(s)	195, 1124
PfeI	GAWTC	2 cut(s)	643, 862
PkrI	GCNGC	2 cut(s)	252, 402
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PshBI	ATTAAT	1 cut(s)	381
Psp124BI	GAGCTC	1 cut(s)	188
Psp6I	CCWGG	2 cut(s)	141, 632
PspGI	CCWGG	2 cut(s)	141, 632
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	3 cut(s)	357, 573, 971
PsuI	RGATCY	1 cut(s)	949
RsaI	GTAC	2 cut(s)	410, 887
RsaNI	GTAC	2 cut(s)	409, 886
SacI	GAGCTC	1 cut(s)	188
SaqAI	TTAA	7 cut(s)	27, 201, 381, 600, 908, 966, 1029
SatI	GCNGC	2 cut(s)	251, 401
Sau3AI	GATC	5 cut(s)	84, 277, 342, 582, 949
Sau96I	GGNCC	3 cut(s)	357, 573, 971
ScaI	AGTACT	1 cut(s)	410
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	3 cut(s)	143, 361, 634
SduI	GDGCHC	1 cut(s)	188
SfaNI	GCATC	3 cut(s)	335, 927, 969
SfuI	TTCGAA	1 cut(s)	641
SmlI	CTYRAG	3 cut(s)	200, 404, 866
SmoI	CTYRAG	3 cut(s)	200, 404, 866
SsiI	CCGC	6 cut(s)	110, 114, 250, 262, 400, 852
SspMI	CTAG	1 cut(s)	9
SstI	GAGCTC	1 cut(s)	188
StyD4I	CCNGG	3 cut(s)	141, 359, 632
TaaI	ACNGT	1 cut(s)	795
TaqI	TCGA	5 cut(s)	55, 125, 376, 431, 641
TatI	WGTACW	2 cut(s)	408, 885
TauI	GCSGC	2 cut(s)	253, 403
TfiI	GAWTC	2 cut(s)	643, 862
Tru1I	TTAA	7 cut(s)	27, 201, 381, 600, 908, 966, 1029
Tru9I	TTAA	7 cut(s)	27, 201, 381, 600, 908, 966, 1029
TscAI	CASTG	3 cut(s)	798, 864, 996
TseFI	GTSAC	2 cut(s)	545, 1034
Tsp45I	GTSAC	2 cut(s)	545, 1034
TspDTI	ATGAA	5 cut(s)	585, 621, 817, 857, 1071
TspGWI	ACGGA	1 cut(s)	695
TspRI	CASTG	3 cut(s)	798, 864, 996
Vha464I	CTTAAG	1 cut(s)	200
VspI	ATTAAT	1 cut(s)	381
XapI	RAATTY	6 cut(s)	37, 58, 195, 558, 721, 1067
XbaI	TCTAGA	1 cut(s)	8
XmnI	GAANNNNTTC	2 cut(s)	195, 1124
XspI	CTAG	1 cut(s)	9
ZrmI	AGTACT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.