Rorug05G0084500
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0005036
Physical Location & Seq
Reverse (-)
7286751 .. 7293127
6377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0084500.1

Sequence Viewer

Length: 615 bp
ATGGCAGGCATGTCTTCCCGAACGAAGGGTCCAAGGAATCGTGAACTCAAACGGCTGCAGGCCGAAAAGCCTCTGTTCATCCAAAAACGAGATAAGCCTGCGGGTAGCAAGGTCAGAAAATCAAAGCATCATTCTCCTGCTGGGCCTTCACATGGTGCTGTGACATCTTCTCGTTTCTCCAGTGCCGATGGTAAACATAGTGCTGATGGCAGCAAGGTGACTCAACAAGAGCTTGCCAAAATGTGTGCTATCCGTGACTGGTGCAAGGATTCTTGTTCTTACTACAATCCCAAGGAACTCCGTAGTCCTCCTGGTGCCGAGCCGTTAGAACGAAAGGTTGCCACTTGTCCCCACCAGGGTAACAAGAATGTTTTTAGTTTCATGTTTTGTAAACCCGATTGTGCCCGTAGTGCTACTGATTCTGTCCTTTCAGGCCGTGCTTTTGATCGCTGCAACATCAAAGATAACTCTAGTGCTCCTGGTAGCGATGAAGAACAAAAGGCCACTAAACACTTGGAGATGACAGTTGACACTTCTGGAGCATCTCCTGTTCGATCCTCCTGGTTCTATTTGGTAACCTGGGGGTTTGCTTCAGCCGGGTATTTTGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

204

Amino Acids

22.44

Weight (kDa)

9.57

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 314
AciI CCGC 1 cut(s) 101
AclWI GGATC 1 cut(s) 549
AcuI CTGAAG 1 cut(s) 576
AdeI CACNNNGTG 1 cut(s) 155
AfiI CCNNNNNNNGG 3 cut(s) 25, 152, 356
AjnI CCWGG 5 cut(s) 310, 354, 478, 560, 578
AloI GAACNNNNNNTCC 2 cut(s) 13, 45
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
Alw21I GWGCWC 1 cut(s) 478
AlwI GGATC 1 cut(s) 549
AoxI GGCC 4 cut(s) 60, 143, 433, 501
ApeKI GCWGC 3 cut(s) 55, 210, 450
ArsI GACNNNNNNTTYG 2 cut(s) 13, 45
AspS9I GGNCC 2 cut(s) 29, 143
AsuC2I CCSGG 1 cut(s) 598
AsuHPI GGTGA 1 cut(s) 229
AvaII GGWCC 1 cut(s) 29
BaeGI GKGCMC 1 cut(s) 406
BanI GGYRCC 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 478
BbvI GCAGC 3 cut(s) 42, 222, 437
BccI CCATC 2 cut(s) 182, 200
BceAI ACGGC 3 cut(s) 68, 307, 420
BciT130I CCWGG 5 cut(s) 312, 356, 480, 562, 580
BcnI CCSGG 1 cut(s) 598
BfaI CTAG 1 cut(s) 471
BfmI CTRYAG 1 cut(s) 56
BisI GCNGC 3 cut(s) 56, 211, 451
BlsI GCNGC 3 cut(s) 57, 212, 452
Bme1390I CCNGG 6 cut(s) 312, 356, 480, 562, 580, 598
Bme18I GGWCC 1 cut(s) 29
BmgT120I GGNCC 2 cut(s) 29, 143
BmiI GGNNCC 2 cut(s) 30, 316
BmrFI CCNGG 6 cut(s) 312, 356, 480, 562, 580, 598
BmsI GCATC 2 cut(s) 136, 551
BpiI GAAGAC 1 cut(s) 6
BpmI CTGGAG 2 cut(s) 163, 558
BpuMI CCSGG 1 cut(s) 598
BsaJI CCNNGG 4 cut(s) 32, 291, 355, 579
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 152, 356
Bse1I ACTGG 2 cut(s) 180, 263
BseBI CCWGG 5 cut(s) 312, 356, 480, 562, 580
BseDI CCNNGG 4 cut(s) 32, 291, 355, 579
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 3 cut(s) 25, 152, 356
BseNI ACTGG 2 cut(s) 180, 263
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 3 cut(s) 42, 222, 437
BseYI CCCAGC 1 cut(s) 140
BshFI GGCC 4 cut(s) 62, 145, 435, 503
BshNI GGYRCC 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 478
BsiSI CCGG 1 cut(s) 597
BslFI GGGAC 1 cut(s) 333
BslI CCNNNNNNNGG 3 cut(s) 25, 152, 356
BsmFI GGGAC 1 cut(s) 333
BsnI GGCC 4 cut(s) 62, 145, 435, 503
Bsp1286I GDGCHC 2 cut(s) 406, 478
Bsp143I GATC 2 cut(s) 445, 554
BspACI CCGC 1 cut(s) 101
BspANI GGCC 4 cut(s) 62, 145, 435, 503
BspLI GGNNCC 2 cut(s) 30, 316
BspMAI CTGCAG 1 cut(s) 60
BspPI GGATC 1 cut(s) 549
BspT107I GGYRCC 1 cut(s) 314
BsrI ACTGG 2 cut(s) 180, 263
BssECI CCNNGG 4 cut(s) 32, 291, 355, 579
BssMI GATC 2 cut(s) 445, 554
BssT1I CCWWGG 2 cut(s) 32, 291
Bst2UI CCWGG 5 cut(s) 312, 356, 480, 562, 580
Bst4CI ACNGT 1 cut(s) 526
BstC8I GCNNGC 4 cut(s) 7, 60, 99, 234
BstEII GGTNACC 1 cut(s) 574
BstF5I GGATG 1 cut(s) 78
BstKTI GATC 2 cut(s) 448, 557
BstMBI GATC 2 cut(s) 445, 554
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstNI CCWGG 5 cut(s) 312, 356, 480, 562, 580
BstNSI RCATGY 1 cut(s) 13
BstPI GGTNACC 1 cut(s) 574
BstSCI CCNGG 6 cut(s) 310, 354, 478, 560, 578, 596
BstSFI CTRYAG 1 cut(s) 56
BstSLI GKGCMC 1 cut(s) 406
BstV1I GCAGC 3 cut(s) 42, 222, 437
BstV2I GAAGAC 1 cut(s) 6
BsuRI GGCC 4 cut(s) 62, 145, 435, 503
BtgZI GCGATG 1 cut(s) 501
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 187
Cac8I GCNNGC 4 cut(s) 7, 60, 99, 234
Cfr13I GGNCC 2 cut(s) 29, 143
CviAII CATG 3 cut(s) 10, 152, 382
DpnI GATC 2 cut(s) 447, 556
DpnII GATC 2 cut(s) 445, 554
DraIII CACNNNGTG 1 cut(s) 155
Eco130I CCWWGG 2 cut(s) 32, 291
Eco47I GGWCC 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 576
Eco91I GGTNACC 1 cut(s) 574
EcoO65I GGTNACC 1 cut(s) 574
EcoRII CCWGG 5 cut(s) 310, 354, 478, 560, 578
EcoT14I CCWWGG 2 cut(s) 32, 291
ErhI CCWWGG 2 cut(s) 32, 291
FaeI CATG 3 cut(s) 13, 155, 385
FaiI YATR 4 cut(s) 11, 153, 198, 383
FaqI GGGAC 1 cut(s) 333
FatI CATG 3 cut(s) 9, 151, 381
FauI CCCGC 1 cut(s) 94
Fnu4HI GCNGC 3 cut(s) 56, 211, 451
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 3 cut(s) 56, 211, 451
FspBI CTAG 1 cut(s) 471
GluI GCNGC 3 cut(s) 56, 211, 451
GsaI CCCAGC 1 cut(s) 144
GsuI CTGGAG 2 cut(s) 163, 558
HaeIII GGCC 4 cut(s) 62, 145, 435, 503
HapII CCGG 1 cut(s) 597
Hin1II CATG 3 cut(s) 13, 155, 385
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HinfI GANTC 4 cut(s) 37, 220, 269, 419
HpaII CCGG 1 cut(s) 597
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 4 cut(s) 44, 194, 392, 529
Hpy188I TCNGA 1 cut(s) 116
Hpy188III TCNNGA 3 cut(s) 18, 41, 537
Hpy8I GTNNAC 4 cut(s) 44, 194, 392, 529
HpyAV CCTTC 2 cut(s) 19, 156
HpyCH4III ACNGT 1 cut(s) 526
HpyCH4V TGCA 3 cut(s) 58, 264, 453
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
Hsp92II CATG 3 cut(s) 13, 155, 385
Kzo9I GATC 2 cut(s) 445, 554
LmnI GCTCC 2 cut(s) 481, 539
Lsp1109I GCAGC 3 cut(s) 42, 222, 437
LweI GCATC 2 cut(s) 136, 551
MaeI CTAG 1 cut(s) 471
MaeIII GTNAC 5 cut(s) 160, 217, 254, 359, 574
MalI GATC 2 cut(s) 447, 556
MboI GATC 2 cut(s) 445, 554
MboII GAAGA 3 cut(s) 6, 159, 503
MhlI GDGCHC 2 cut(s) 406, 478
MlyI GAGTC 1 cut(s) 214
MnlI CCTC 3 cut(s) 81, 318, 568
MspI CCGG 1 cut(s) 597
MspR9I CCNGG 6 cut(s) 312, 356, 480, 562, 580, 598
MvaI CCWGG 5 cut(s) 312, 356, 480, 562, 580
MwoI GCNNNNNNNGC 1 cut(s) 410
NciI CCSGG 1 cut(s) 598
NdeII GATC 2 cut(s) 445, 554
NlaIII CATG 3 cut(s) 13, 155, 385
NlaIV GGNNCC 2 cut(s) 30, 316
NmeAIII GCCGAG 1 cut(s) 343
NmuCI GTSAC 3 cut(s) 160, 217, 254
NspI RCATGY 1 cut(s) 13
PfeI GAWTC 3 cut(s) 37, 269, 419
PkrI GCNGC 3 cut(s) 57, 212, 452
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Psp6I CCWGG 5 cut(s) 310, 354, 478, 560, 578
PspEI GGTNACC 1 cut(s) 574
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 5 cut(s) 310, 354, 478, 560, 578
PspN4I GGNNCC 2 cut(s) 30, 316
PspPI GGNCC 2 cut(s) 29, 143
PstI CTGCAG 1 cut(s) 60
SatI GCNGC 3 cut(s) 56, 211, 451
Sau3AI GATC 2 cut(s) 445, 554
Sau96I GGNCC 2 cut(s) 29, 143
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 6 cut(s) 312, 356, 480, 562, 580, 598
SduI GDGCHC 2 cut(s) 406, 478
SetI ASST 5 cut(s) 114, 219, 234, 339, 581
SfaNI GCATC 2 cut(s) 136, 551
SfcI CTRYAG 1 cut(s) 56
SinI GGWCC 1 cut(s) 29
SsiI CCGC 1 cut(s) 101
SspMI CTAG 1 cut(s) 471
StyD4I CCNGG 6 cut(s) 310, 354, 478, 560, 578, 596
StyI CCWWGG 2 cut(s) 32, 291
TaaI ACNGT 1 cut(s) 526
TaqI TCGA 1 cut(s) 553
TfiI GAWTC 3 cut(s) 37, 269, 419
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 3 cut(s) 160, 217, 254
TseI GCWGC 3 cut(s) 55, 210, 450
Tsp45I GTSAC 3 cut(s) 160, 217, 254
TspDTI ATGAA 3 cut(s) 67, 370, 504
TspGWI ACGGA 2 cut(s) 242, 290
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 29
XceI RCATGY 1 cut(s) 13
XcmI CCANNNNNNNNNTGG 1 cut(s) 511
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.