Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005036

Physical Location & Seq

Genomic Coordinates Reverse (-)

19361069 .. 19362205

Gene Structure 1137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032815

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGAAATCTAGATTTGATTCTGTATTCAAGCTATGCATAGTGTTCCCTGCCGGTCGAAATCACTCTCCTTTCCCTAGAACTGTTCTCCCAACTAGTTTCGTGCACACCAGCTATTCGACAGTTTGCCTCACTCAGGAAGAAAGTGTAGTGGAAGACATTTTTGACCAACCAAAGACCTCTGCAGAAGTTCTGGAGAAATGGGGTTGTAGTGATGCTGACATATCAAAGCTGTTCAGGCGGCGGCCTACTTTAAGGAATGCTGACCTTAACCAGCTTCAGTTCAAGTTAAACCTTTTGAGTGGATTGGGTATTACCGCAGCTGAGCTTTTGAAGATGATCAATTGTCGCCCTCGGTTGCTCAGTGTTCGGATTGATCATTGCTTTGATGAGCGGCATGAGTTCTTTATGAAATTGTTTGGGTCACAGGAACTGCTTGTCAAAGCCATTGTAAGGAACCCGTCTCTCTTGATCTACGACTTCCATAATAAAGTCAAGCCGACCATTGCTCTATATGAGGGAATGGGTCTTAGTCGGGAGGAGTTAGTCCCAATGCTAATATCACGGCCGACATTGATCCCAAGAACTACATTTAACAATGAGAAGATGGAGTATATACGCAAAACTGGACTGTCAAATGAGTCCAGGATGTATAAGTATGTTGTGACACTAATTGGCATTTCACGCCTTGAAACTATCAGTGAGAAAGTGGCAAATTTTGAAAAGTTTGGTTTCTCAGAAGATGAGATTTTCAGCCTTTTGGGAAGGTCTCCCATAGTGTTTACTCTTTCAGTGGATAAGGTCCAGAGGAACATGACTTTCGTTTTAGGACAAATGAAACTTCCTGCTACAGTGATTCTTGAGCACCCATTTTTGCTGTACATGAATCTGGAGGCTGCTTTAAAGCCGCGAGTATGTCTTGCAGGAAAAATTGAGGATATGGATCTTGATGTGCAAATTAAAGGACCTAAGTTGCTGACGGCATTGAGAATGACAGAGAAAAGATTTGTGAAGGCATTTGTTAATTGTCACCCAAAGGATGTTGCTGATGAATTGATGGAGTACTATACAAAAGCAAAGGGTGTGAAGCGATTGGCAGAAGCCTCAAAGAAGAAATTGTATGAAGGTTTTCCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

379

Amino Acids

43.39

Weight (kDa)

9.2

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	62 - 137	3.6e-12	mTERF
mTERF	PF02536	133 - 335	4.2e-33	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79220
fragaria_vesca	FvH4_3g15040 FvH4_3g15050
malus_domestica	MD10G1208300.v1.1 MD10G1208400.v1.1
prunus_persica	Prupe.4G134600_v2.0.a1 Prupe.4G134700_v2.0.a1
pyrus_communis	pycom10g17720
rosa_chinensis	RchiOBHm_Chr5g0024801 RchiOBHm_Chr5g0024811
rosa_laevigata	RLG00000032815 RLG00000032816
rosa_multiflora	Rmu_sc0001757.1_g000014 Rmu_sc0001757.1_g000016 Rmu_sc0009744.1_g000008 Rmu_sc0016384.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054570 Rroxscaffold_1G00054580
rosa_rugosa	Rorug05G0084500 Rorug05G0084600
rosa_samantha	Rh5AG176300 Rh5AG176400 Rh5BG174000 Rh5BG174100 Rh5CG191000 Rh5CG191100 Rh5DG175600 Rh5DG175700
rosa_wichuraiana	Rw5G015980 Rw5G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	391
AccII	CGCG	1 cut(s)	907
AciI	CCGC	5 cut(s)	238, 241, 315, 391, 905
AclWI	GGATC	2 cut(s)	568, 948
AcoI	YGGCCR	1 cut(s)	563
AcsI	RAATTY	1 cut(s)	712
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	2 cut(s)	878, 1061
AfiI	CCNNNNNNNGG	2 cut(s)	133, 450
AgsI	TTSAA	5 cut(s)	28, 283, 331, 689, 719
AhlI	ACTAGT	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	641
AluBI	AGCT	6 cut(s)	31, 111, 229, 274, 320, 325
AluI	AGCT	6 cut(s)	31, 111, 229, 274, 320, 325
Alw21I	GWGCWC	2 cut(s)	105, 864
Alw26I	GTCTC	2 cut(s)	465, 771
Alw44I	GTGCAC	1 cut(s)	101
AlwI	GGATC	2 cut(s)	568, 948
AlwNI	CAGNNNCTG	1 cut(s)	430
AoxI	GGCC	2 cut(s)	242, 563
ApaLI	GTGCAC	1 cut(s)	101
ApeKI	GCWGC	2 cut(s)	317, 893
ApoI	RAATTY	1 cut(s)	712
Asp700I	GAANNNNTTC	1 cut(s)	1125
AspS9I	GGNCC	2 cut(s)	799, 962
AsuHPI	GGTGA	1 cut(s)	1019
AvaII	GGWCC	2 cut(s)	799, 962
BaeGI	GKGCMC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	2 cut(s)	105, 864
BbvI	GCAGC	2 cut(s)	329, 880
BccI	CCATC	2 cut(s)	598, 1048
BceAI	ACGGC	2 cut(s)	578, 993
BciT130I	CCWGG	1 cut(s)	643
BclI	TGATCA	2 cut(s)	336, 373
BcoDI	GTCTC	2 cut(s)	465, 771
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	3 cut(s)	9, 75, 93
BfmI	CTRYAG	2 cut(s)	180, 846
BisI	GCNGC	6 cut(s)	239, 242, 318, 392, 894, 905
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	6 cut(s)	240, 243, 319, 393, 895, 906
BmcAI	AGTACT	1 cut(s)	1061
Bme1390I	CCNGG	1 cut(s)	643
Bme18I	GGWCC	2 cut(s)	799, 962
BmgT120I	GGNCC	2 cut(s)	799, 962
BmiI	GGNNCC	1 cut(s)	455
BmrFI	CCNGG	1 cut(s)	643
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	159
BpmI	CTGGAG	2 cut(s)	212, 908
Bpu1102I	GCTNAGC	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	878
BsaBI	GATNNNNATC	1 cut(s)	939
BsaI	GGTCTC	1 cut(s)	771
BsaJI	CCNNGG	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 450
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	628
Bse3DI	GCAATG	2 cut(s)	376, 501
Bse8I	GATNNNNATC	1 cut(s)	939
BseBI	CCWGG	1 cut(s)	643
BseDI	CCNNGG	1 cut(s)	350
BseGI	GGATG	2 cut(s)	651, 1042
BseJI	GATNNNNATC	1 cut(s)	939
BseLI	CCNNNNNNNGG	2 cut(s)	133, 450
BseMI	GCAATG	2 cut(s)	376, 501
BseMII	CTCAG	4 cut(s)	146, 312, 373, 747
BseNI	ACTGG	1 cut(s)	628
BseRI	GAGGAG	1 cut(s)	551
BseSI	GKGCMC	1 cut(s)	105
BseX3I	CGGCCG	1 cut(s)	563
BseXI	GCAGC	2 cut(s)	329, 880
Bsh1236I	CGCG	1 cut(s)	907
Bsh1285I	CGRYCG	2 cut(s)	55, 566
BshFI	GGCC	2 cut(s)	244, 565
BsiEI	CGRYCG	2 cut(s)	55, 566
BsiHKAI	GWGCWC	2 cut(s)	105, 864
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	530
BslI	CCNNNNNNNGG	2 cut(s)	133, 450
BsmAI	GTCTC	2 cut(s)	465, 771
BsmBI	CGTCTC	1 cut(s)	465
BsmFI	GGGAC	1 cut(s)	530
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	2 cut(s)	244, 565
Bso31I	GGTCTC	1 cut(s)	771
Bsp1286I	GDGCHC	2 cut(s)	105, 864
Bsp1407I	TGTACA	1 cut(s)	876
Bsp143I	GATC	5 cut(s)	336, 373, 468, 573, 940
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	5 cut(s)	238, 241, 315, 391, 905
BspANI	GGCC	2 cut(s)	244, 565
BspCNI	CTCAG	4 cut(s)	145, 313, 372, 746
BspFNI	CGCG	1 cut(s)	907
BspLI	GGNNCC	1 cut(s)	455
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	2 cut(s)	568, 948
BspTNI	GGTCTC	1 cut(s)	771
BsrBI	CCGCTC	1 cut(s)	391
BsrDI	GCAATG	2 cut(s)	376, 501
BsrFI	RCCGGY	1 cut(s)	50
BsrGI	TGTACA	1 cut(s)	876
BsrI	ACTGG	1 cut(s)	628
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	350
BssMI	GATC	5 cut(s)	336, 373, 468, 573, 940
Bst2UI	CCWGG	1 cut(s)	643
Bst4CI	ACNGT	4 cut(s)	82, 121, 630, 850
BstAUI	TGTACA	1 cut(s)	876
BstDEI	CTNAG	6 cut(s)	132, 321, 359, 527, 733, 966
BstENI	CCTNNNNNAGG	1 cut(s)	131
BstF5I	GGATG	2 cut(s)	651, 1042
BstFNI	CGCG	1 cut(s)	907
BstKTI	GATC	5 cut(s)	339, 376, 471, 576, 943
BstMAI	GTCTC	2 cut(s)	465, 771
BstMBI	GATC	5 cut(s)	336, 373, 468, 573, 940
BstMCI	CGRYCG	2 cut(s)	55, 566
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 681
BstNI	CCWGG	1 cut(s)	643
BstSCI	CCNGG	1 cut(s)	641
BstSFI	CTRYAG	2 cut(s)	180, 846
BstSLI	GKGCMC	1 cut(s)	105
BstUI	CGCG	1 cut(s)	907
BstV1I	GCAGC	2 cut(s)	329, 880
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	940
BstYI	RGATCY	1 cut(s)	940
BstZI	CGGCCG	1 cut(s)	563
BsuRI	GGCC	2 cut(s)	244, 565
BtsCI	GGATG	2 cut(s)	651, 1042
BtsIMutI	CAGTG	4 cut(s)	367, 703, 795, 855
CaiI	CAGNNNCTG	1 cut(s)	430
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	2 cut(s)	799, 962
Csp6I	GTAC	2 cut(s)	877, 1060
CviAII	CATG	3 cut(s)	395, 811, 880
CviQI	GTAC	2 cut(s)	877, 1060
DdeI	CTNAG	6 cut(s)	132, 321, 359, 527, 733, 966
DpnI	GATC	5 cut(s)	338, 375, 470, 575, 942
DpnII	GATC	5 cut(s)	336, 373, 468, 573, 940
DraI	TTTAAA	1 cut(s)	900
EaeI	YGGCCR	1 cut(s)	563
EagI	CGGCCG	1 cut(s)	563
EclXI	CGGCCG	1 cut(s)	563
Eco31I	GGTCTC	1 cut(s)	771
Eco47I	GGWCC	2 cut(s)	799, 962
Eco52I	CGGCCG	1 cut(s)	563
Eco57I	CTGAAG	1 cut(s)	260
EcoNI	CCTNNNNNAGG	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	962
EcoRII	CCWGG	1 cut(s)	641
EcoT22I	ATGCAT	1 cut(s)	38
Esp3I	CGTCTC	1 cut(s)	465
FaeI	CATG	3 cut(s)	398, 814, 883
FaqI	GGGAC	1 cut(s)	530
FatI	CATG	3 cut(s)	394, 810, 879
FbaI	TGATCA	2 cut(s)	336, 373
Fnu4HI	GCNGC	6 cut(s)	239, 242, 318, 392, 894, 905
FokI	GGATG	2 cut(s)	658, 1049
Fsp4HI	GCNGC	6 cut(s)	239, 242, 318, 392, 894, 905
FspBI	CTAG	3 cut(s)	9, 75, 93
GluI	GCNGC	6 cut(s)	239, 242, 318, 392, 894, 905
GsuI	CTGGAG	2 cut(s)	212, 908
HaeIII	GGCC	2 cut(s)	244, 565
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	3 cut(s)	398, 814, 883
HinfI	GANTC	4 cut(s)	17, 638, 853, 883
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	1 cut(s)	1019
Hpy166II	GTNNAC	2 cut(s)	103, 780
Hpy188I	TCNGA	2 cut(s)	369, 736
Hpy188III	TCNNGA	9 cut(s)	9, 134, 191, 466, 533, 802, 857, 887, 944
Hpy8I	GTNNAC	2 cut(s)	103, 780
HpyAV	CCTTC	3 cut(s)	756, 1003, 1115
HpyCH4III	ACNGT	4 cut(s)	82, 121, 630, 850
HpyCH4V	TGCA	5 cut(s)	36, 103, 182, 920, 952
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 681
HpyF3I	CTNAG	6 cut(s)	132, 321, 359, 527, 733, 966
Hsp92II	CATG	3 cut(s)	398, 814, 883
Ksp22I	TGATCA	2 cut(s)	336, 373
Kzo9I	GATC	5 cut(s)	336, 373, 468, 573, 940
Lsp1109I	GCAGC	2 cut(s)	329, 880
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	3 cut(s)	9, 75, 93
MaeIII	GTNAC	3 cut(s)	420, 661, 1025
MalI	GATC	5 cut(s)	338, 375, 470, 575, 942
MbiI	CCGCTC	1 cut(s)	391
MboI	GATC	5 cut(s)	336, 373, 468, 573, 940
MboII	GAAGA	6 cut(s)	149, 164, 343, 613, 749, 1120
MfeI	CAATTG	1 cut(s)	340
MflI	RGATCY	1 cut(s)	940
MhlI	GDGCHC	2 cut(s)	105, 864
MluCI	AATT	9 cut(s)	340, 410, 669, 712, 927, 954, 1021, 1049, 1112
MlyI	GAGTC	1 cut(s)	647
MnlI	CCTC	9 cut(s)	137, 187, 360, 508, 529, 798, 883, 925, 1111
Mph1103I	ATGCAT	1 cut(s)	38
MroXI	GAANNNNTTC	1 cut(s)	1125
MseI	TTAA	7 cut(s)	251, 267, 287, 591, 899, 957, 1020
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	643
MunI	CAATTG	1 cut(s)	340
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	643
MvnI	CGCG	1 cut(s)	907
MwoI	GCNNNNNNNGC	2 cut(s)	235, 681
NdeII	GATC	5 cut(s)	336, 373, 468, 573, 940
NlaIII	CATG	3 cut(s)	398, 814, 883
NlaIV	GGNNCC	1 cut(s)	455
NmuCI	GTSAC	3 cut(s)	420, 661, 1025
NsiI	ATGCAT	1 cut(s)	38
PctI	GAATGC	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	1125
PfeI	GAWTC	3 cut(s)	17, 853, 883
PfoI	TCCNGGA	1 cut(s)	641
PkrI	GCNGC	6 cut(s)	240, 243, 319, 393, 895, 906
PleI	GAGTC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	646
PpuMI	RGGWCCY	1 cut(s)	962
Psp5II	RGGWCCY	1 cut(s)	962
Psp6I	CCWGG	1 cut(s)	641
PspGI	CCWGG	1 cut(s)	641
PspN4I	GGNNCC	1 cut(s)	455
PspPI	GGNCC	2 cut(s)	799, 962
PspPPI	RGGWCCY	1 cut(s)	962
PstI	CTGCAG	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	940
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	2 cut(s)	878, 1061
RsaNI	GTAC	2 cut(s)	877, 1060
SaqAI	TTAA	7 cut(s)	251, 267, 287, 591, 899, 957, 1020
SatI	GCNGC	6 cut(s)	239, 242, 318, 392, 894, 905
Sau3AI	GATC	5 cut(s)	336, 373, 468, 573, 940
Sau96I	GGNCC	2 cut(s)	799, 962
ScaI	AGTACT	1 cut(s)	1061
SchI	GAGTC	1 cut(s)	647
ScrFI	CCNGG	1 cut(s)	643
SduI	GDGCHC	2 cut(s)	105, 864
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	2 cut(s)	180, 846
SinI	GGWCC	2 cut(s)	799, 962
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
SpeI	ACTAGT	1 cut(s)	92
Sse9I	AATT	9 cut(s)	340, 410, 669, 712, 927, 954, 1021, 1049, 1112
SsiI	CCGC	5 cut(s)	238, 241, 315, 391, 905
SspMI	CTAG	3 cut(s)	9, 75, 93
StyD4I	CCNGG	1 cut(s)	641
TaaI	ACNGT	4 cut(s)	82, 121, 630, 850
TaqI	TCGA	2 cut(s)	55, 116
TasI	AATT	9 cut(s)	340, 410, 669, 712, 927, 954, 1021, 1049, 1112
TatI	WGTACW	2 cut(s)	876, 1059
TauI	GCSGC	4 cut(s)	241, 244, 394, 907
TfiI	GAWTC	3 cut(s)	17, 853, 883
Tru1I	TTAA	7 cut(s)	251, 267, 287, 591, 899, 957, 1020
Tru9I	TTAA	7 cut(s)	251, 267, 287, 591, 899, 957, 1020
TscAI	CASTG	4 cut(s)	367, 703, 795, 855
TseFI	GTSAC	3 cut(s)	420, 661, 1025
TseI	GCWGC	2 cut(s)	317, 893
Tsp45I	GTSAC	3 cut(s)	420, 661, 1025
TspDTI	ATGAA	6 cut(s)	17, 422, 848, 896, 1062, 1134
TspRI	CASTG	4 cut(s)	367, 703, 795, 855
VneI	GTGCAC	1 cut(s)	101
VpaK11BI	GGWCC	2 cut(s)	799, 962
XagI	CCTNNNNNAGG	1 cut(s)	131
XapI	RAATTY	1 cut(s)	712
XbaI	TCTAGA	1 cut(s)	8
XmnI	GAANNNNTTC	1 cut(s)	1125
XspI	CTAG	3 cut(s)	9, 75, 93
ZrmI	AGTACT	1 cut(s)	1061
Zsp2I	ATGCAT	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.