Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005036

Physical Location & Seq

Genomic Coordinates Reverse (-)

9321401 .. 9322435

Gene Structure 1035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g15050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGCCCACCAACTATTCGACGGTTTGCCTGACCCAACTAGAAGGTGCCGTAGGAGACGATACAAACCAACCCGAAGACTCTCTGCAAGTTCTGAAGAGATTGGGCTGCAGCGACGCTGACATAACCAAGATTTTCACAAAGGCATCTGCTCTAAAGAAAGCTGACATCGACCAGCTTCAGTCGAAACTCAAACTCCTATCTGGCTTGGGACTTACCCCACCTGAGCTGGTGAAGATAGTCAGTGACCGGCCACGGTTTCTCATTCCTCGACTCGACTGCTTTGCTGAGCAGCTTGACTACTTTGATGAATTGTTTGGGTCAAGGGAGTTGCTTATAAAAGCCATTTTGAGGAACCCTTCTATCCTGACGTATGATCTTCACAAGAAAATCAAACCCACCGTTGAGATGTATAGAGTACTTGGTCTTGGCATGGAGGACTTGATCCAAATGCTTCTAGCGCGGCCAACATTGATTTCAAGAACTTCATTTAATGAAGAGAAGATGGAGTTTATCCGCAAGACCAGGGTGTCAAGTGATTCCGCAATGTATAAGTATATAGTCACTCTCATTGGGGTTTCGCGCCTTGAAACTATCCGTCAGAAGATGGCAAACTTTGAGAAGTTTGGTTTGTCAGAAGATGAGGTTCTGGGACTTTTTGGGAGGTCTCCATTAGTTATGACATTGTCAATCGATAAGGTTCAGAGGAACATGACTTTCATCTTATCACATATGAAGCTTTCTGCTAAAGCAGTTCTTGATCACCCGAGTTTGTTATACTTGAATCTGGAGAATGTGCTAAAGCCGCGAGTACTTCTTGCAGGCAAGATGCATGAAATGGAACTTAAACAGCAAATTACAGGTCCTATGATCGTAAGCGTAATGAGGATGAAAGAGAAAAGGTTTCTGAAGGCTTTTATTAATCGTCAACCAAAAGAGGTTGCTGATGAATTGATGGAGTACTACAAAAATGTGAAGGGTGTGAAGCGATTGGCAGAAGCCTCGAAGAAGAACATGACTTATGGATTTCCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

345

Amino Acids

39.29

Weight (kDa)

9.36

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	28 - 91	1.6e-06	mTERF
mTERF	PF02536	98 - 301	8.5e-32	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79220
fragaria_vesca	FvH4_3g15040 FvH4_3g15050
malus_domestica	MD10G1208300.v1.1 MD10G1208400.v1.1
prunus_persica	Prupe.4G134600_v2.0.a1 Prupe.4G134700_v2.0.a1
pyrus_communis	pycom10g17720
rosa_chinensis	RchiOBHm_Chr5g0024801 RchiOBHm_Chr5g0024811
rosa_laevigata	RLG00000032815 RLG00000032816
rosa_multiflora	Rmu_sc0001757.1_g000014 Rmu_sc0001757.1_g000016 Rmu_sc0009744.1_g000008 Rmu_sc0016384.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054570 Rroxscaffold_1G00054580
rosa_rugosa	Rorug05G0084500 Rorug05G0084600
rosa_samantha	Rh5AG176300 Rh5AG176400 Rh5BG174000 Rh5BG174100 Rh5CG191000 Rh5CG191100 Rh5DG175600 Rh5DG175700
rosa_wichuraiana	Rw5G015980 Rw5G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	335
AasI	GACNNNNNNGTC	1 cut(s)	526
AccB1I	GGYRCC	1 cut(s)	44
AccII	CGCG	3 cut(s)	460, 580, 805
AciI	CCGC	4 cut(s)	460, 514, 540, 803
AclWI	GGATC	1 cut(s)	436
AcoI	YGGCCR	2 cut(s)	248, 461
AcuI	CTGAAG	3 cut(s)	113, 161, 926
AfaI	GTAC	3 cut(s)	417, 810, 959
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	3 cut(s)	477, 587, 781
AjnI	CCWGG	1 cut(s)	521
AjuI	GAANNNNNNNTTGG	2 cut(s)	457, 489
AluBI	AGCT	5 cut(s)	161, 175, 226, 292, 736
AluI	AGCT	5 cut(s)	161, 175, 226, 292, 736
Alw26I	GTCTC	2 cut(s)	48, 669
AlwI	GGATC	1 cut(s)	436
Ama87I	CYCGRG	1 cut(s)	763
AoxI	GGCC	2 cut(s)	248, 461
ApeKI	GCWGC	3 cut(s)	105, 108, 289
ArsI	GACNNNNNNTTYG	2 cut(s)	844, 876
AseI	ATTAAT	1 cut(s)	918
AspLEI	GCGC	2 cut(s)	460, 582
AspS9I	GGNCC	1 cut(s)	860
AsuHPI	GGTGA	2 cut(s)	241, 752
AvaI	CYCGRG	1 cut(s)	763
AvaII	GGWCC	1 cut(s)	860
BanI	GGYRCC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	3 cut(s)	92, 120, 301
BccI	CCATC	3 cut(s)	496, 598, 946
BceAI	ACGGC	1 cut(s)	32
BcgI	CGANNNNNNTGC	6 cut(s)	258, 263, 292, 297, 981, 1015
BciT130I	CCWGG	1 cut(s)	523
BclI	TGATCA	1 cut(s)	757
BcoDI	GTCTC	2 cut(s)	48, 669
BfaI	CTAG	2 cut(s)	38, 455
BfmI	CTRYAG	1 cut(s)	106
BisI	GCNGC	5 cut(s)	106, 109, 290, 461, 803
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	5 cut(s)	107, 110, 291, 462, 804
BmcAI	AGTACT	3 cut(s)	417, 810, 959
Bme1390I	CCNGG	1 cut(s)	523
Bme18I	GGWCC	1 cut(s)	860
BmeT110I	CYCGRG	1 cut(s)	763
BmgT120I	GGNCC	1 cut(s)	860
BmiI	GGNNCC	2 cut(s)	46, 353
BmrFI	CCNGG	1 cut(s)	523
BmsI	GCATC	2 cut(s)	152, 816
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	806
Bpu10I	CCTNAGC	1 cut(s)	222
Bpu1102I	GCTNAGC	1 cut(s)	285
Bsa29I	ATCGAT	1 cut(s)	690
BsaI	GGTCTC	1 cut(s)	669
BsaJI	CCNNGG	2 cut(s)	251, 522
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse118I	RCCGGY	1 cut(s)	246
Bse3DI	GCAATG	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	523
BseCI	ATCGAT	1 cut(s)	690
BseDI	CCNNGG	2 cut(s)	251, 522
BseGI	GGATG	1 cut(s)	891
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	2 cut(s)	213, 276
BseXI	GCAGC	3 cut(s)	92, 120, 301
Bsh1236I	CGCG	3 cut(s)	460, 580, 805
BshFI	GGCC	2 cut(s)	250, 463
BshNI	GGYRCC	1 cut(s)	44
BshVI	ATCGAT	1 cut(s)	690
BsiHKCI	CYCGRG	1 cut(s)	763
BsiSI	CCGG	1 cut(s)	247
BslFI	GGGAC	2 cut(s)	222, 663
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmAI	GTCTC	2 cut(s)	48, 669
BsmBI	CGTCTC	1 cut(s)	48
BsmFI	GGGAC	2 cut(s)	222, 663
BsnI	GGCC	2 cut(s)	250, 463
Bso31I	GGTCTC	1 cut(s)	669
BsoBI	CYCGRG	1 cut(s)	763
Bsp143I	GATC	4 cut(s)	373, 441, 757, 867
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	4 cut(s)	460, 514, 540, 803
BspANI	GGCC	2 cut(s)	250, 463
BspCNI	CTCAG	2 cut(s)	214, 277
BspDI	ATCGAT	1 cut(s)	690
BspFNI	CGCG	3 cut(s)	460, 580, 805
BspLI	GGNNCC	2 cut(s)	46, 353
BspMAI	CTGCAG	1 cut(s)	110
BspPI	GGATC	1 cut(s)	436
BspT107I	GGYRCC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	669
BsrDI	GCAATG	1 cut(s)	549
BsrFI	RCCGGY	1 cut(s)	246
BssAI	RCCGGY	1 cut(s)	246
BssECI	CCNNGG	2 cut(s)	251, 522
BssMI	GATC	4 cut(s)	373, 441, 757, 867
Bst2UI	CCWGG	1 cut(s)	523
Bst4CI	ACNGT	3 cut(s)	22, 255, 400
Bst6I	CTCTTC	2 cut(s)	89, 489
BstC8I	GCNNGC	1 cut(s)	820
BstDEI	CTNAG	2 cut(s)	222, 285
BstDSI	CCRYGG	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	891
BstFNI	CGCG	3 cut(s)	460, 580, 805
BstHHI	GCGC	2 cut(s)	460, 582
BstKTI	GATC	4 cut(s)	376, 444, 760, 870
BstMAI	GTCTC	2 cut(s)	48, 669
BstMBI	GATC	4 cut(s)	373, 441, 757, 867
BstMWI	GCNNNNNNNGC	2 cut(s)	457, 802
BstNI	CCWGG	1 cut(s)	523
BstSCI	CCNGG	1 cut(s)	521
BstSFI	CTRYAG	1 cut(s)	106
BstUI	CGCG	3 cut(s)	460, 580, 805
BstV1I	GCAGC	3 cut(s)	92, 120, 301
BstV2I	GAAGAC	1 cut(s)	81
Bsu15I	ATCGAT	1 cut(s)	690
BsuRI	GGCC	2 cut(s)	250, 463
BsuTUI	ATCGAT	1 cut(s)	690
BtgI	CCRYGG	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	891
BtsIMutI	CAGTG	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	820
CfoI	GCGC	2 cut(s)	460, 582
Cfr10I	RCCGGY	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	860
ClaI	ATCGAT	1 cut(s)	690
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	3 cut(s)	416, 809, 958
CviAII	CATG	4 cut(s)	430, 709, 830, 1012
CviQI	GTAC	3 cut(s)	416, 809, 958
DdeI	CTNAG	2 cut(s)	222, 285
DpnI	GATC	4 cut(s)	375, 443, 759, 869
DpnII	GATC	4 cut(s)	373, 441, 757, 867
DrdI	GACNNNNNNGTC	1 cut(s)	526
DseDI	GACNNNNNNGTC	1 cut(s)	526
EaeI	YGGCCR	2 cut(s)	248, 461
Eam1104I	CTCTTC	2 cut(s)	89, 489
EarI	CTCTTC	2 cut(s)	89, 489
Eco31I	GGTCTC	1 cut(s)	669
Eco47I	GGWCC	1 cut(s)	860
Eco57I	CTGAAG	3 cut(s)	113, 161, 926
Eco88I	CYCGRG	1 cut(s)	763
EcoO109I	RGGNCCY	1 cut(s)	860
EcoRII	CCWGG	1 cut(s)	521
EcoT22I	ATGCAT	1 cut(s)	831
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	4 cut(s)	433, 712, 833, 1015
FalI	AAGNNNNNCTT	2 cut(s)	738, 770
FaqI	GGGAC	2 cut(s)	222, 663
FatI	CATG	4 cut(s)	429, 708, 829, 1011
FauNDI	CATATG	1 cut(s)	729
FbaI	TGATCA	1 cut(s)	757
Fnu4HI	GCNGC	5 cut(s)	106, 109, 290, 461, 803
FokI	GGATG	1 cut(s)	898
Fsp4HI	GCNGC	5 cut(s)	106, 109, 290, 461, 803
FspBI	CTAG	2 cut(s)	38, 455
GlaI	GCGC	2 cut(s)	459, 581
GluI	GCNGC	5 cut(s)	106, 109, 290, 461, 803
GsuI	CTGGAG	1 cut(s)	806
HaeIII	GGCC	2 cut(s)	250, 463
HapII	CCGG	1 cut(s)	247
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	2 cut(s)	460, 582
Hin1II	CATG	4 cut(s)	433, 712, 833, 1015
Hin6I	GCGC	2 cut(s)	458, 580
HinP1I	GCGC	2 cut(s)	458, 580
HincII	GTYRAC	1 cut(s)	926
HindII	GTYRAC	1 cut(s)	926
HindIII	AAGCTT	1 cut(s)	734
HinfI	GANTC	4 cut(s)	77, 270, 536, 781
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	2 cut(s)	241, 752
Hpy166II	GTNNAC	1 cut(s)	926
Hpy188I	TCNGA	6 cut(s)	93, 600, 634, 702, 906, 1034
Hpy188III	TCNNGA	4 cut(s)	364, 477, 755, 785
Hpy8I	GTNNAC	1 cut(s)	926
Hpy99I	CGWCG	2 cut(s)	22, 116
HpyAV	CCTTC	4 cut(s)	35, 366, 901, 967
HpyCH4III	ACNGT	3 cut(s)	22, 255, 400
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	4 cut(s)	85, 108, 818, 829
HpyF10VI	GCNNNNNNNGC	2 cut(s)	457, 802
HpyF3I	CTNAG	2 cut(s)	222, 285
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	4 cut(s)	433, 712, 833, 1015
HspAI	GCGC	2 cut(s)	458, 580
Ksp22I	TGATCA	1 cut(s)	757
Kzo9I	GATC	4 cut(s)	373, 441, 757, 867
Lsp1109I	GCAGC	3 cut(s)	92, 120, 301
LweI	GCATC	2 cut(s)	152, 816
MaeI	CTAG	2 cut(s)	38, 455
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	2 cut(s)	242, 559
MalI	GATC	4 cut(s)	375, 443, 759, 869
MboI	GATC	4 cut(s)	373, 441, 757, 867
MluCI	AATT	3 cut(s)	308, 852, 947
MlyI	GAGTC	2 cut(s)	71, 264
MnlI	CCTC	9 cut(s)	276, 342, 427, 634, 654, 696, 876, 928, 1009
Mph1103I	ATGCAT	1 cut(s)	831
MseI	TTAA	3 cut(s)	489, 843, 918
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	1 cut(s)	523
MvaI	CCWGG	1 cut(s)	523
MvnI	CGCG	3 cut(s)	460, 580, 805
MwoI	GCNNNNNNNGC	2 cut(s)	457, 802
NdeI	CATATG	1 cut(s)	729
NdeII	GATC	4 cut(s)	373, 441, 757, 867
NlaIII	CATG	4 cut(s)	433, 712, 833, 1015
NlaIV	GGNNCC	2 cut(s)	46, 353
NmuCI	GTSAC	2 cut(s)	242, 559
NsiI	ATGCAT	1 cut(s)	831
PfeI	GAWTC	2 cut(s)	536, 781
PflFI	GACNNNGTC	1 cut(s)	682
PkrI	GCNGC	5 cut(s)	107, 110, 291, 462, 804
PleI	GAGTC	2 cut(s)	71, 264
PpsI	GAGTC	2 cut(s)	71, 264
PpuMI	RGGWCCY	1 cut(s)	860
PshBI	ATTAAT	1 cut(s)	918
PsiI	TTATAA	1 cut(s)	335
Psp5II	RGGWCCY	1 cut(s)	860
Psp6I	CCWGG	1 cut(s)	521
PspGI	CCWGG	1 cut(s)	521
PspN4I	GGNNCC	2 cut(s)	46, 353
PspPI	GGNCC	1 cut(s)	860
PspPPI	RGGWCCY	1 cut(s)	860
PstI	CTGCAG	1 cut(s)	110
PsyI	GACNNNGTC	1 cut(s)	682
RsaI	GTAC	3 cut(s)	417, 810, 959
RsaNI	GTAC	3 cut(s)	416, 809, 958
SaqAI	TTAA	3 cut(s)	489, 843, 918
SatI	GCNGC	5 cut(s)	106, 109, 290, 461, 803
Sau3AI	GATC	4 cut(s)	373, 441, 757, 867
Sau96I	GGNCC	1 cut(s)	860
ScaI	AGTACT	3 cut(s)	417, 810, 959
SchI	GAGTC	2 cut(s)	71, 264
ScrFI	CCNGG	1 cut(s)	523
SfaNI	GCATC	2 cut(s)	152, 816
SfcI	CTRYAG	1 cut(s)	106
SinI	GGWCC	1 cut(s)	860
Sse9I	AATT	3 cut(s)	308, 852, 947
SsiI	CCGC	4 cut(s)	460, 514, 540, 803
SspMI	CTAG	2 cut(s)	38, 455
StyD4I	CCNGG	1 cut(s)	521
TaaI	ACNGT	3 cut(s)	22, 255, 400
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	7 cut(s)	17, 168, 182, 268, 273, 690, 1001
TasI	AATT	3 cut(s)	308, 852, 947
TatI	WGTACW	3 cut(s)	415, 808, 957
TauI	GCSGC	2 cut(s)	463, 805
TfiI	GAWTC	2 cut(s)	536, 781
Tru1I	TTAA	3 cut(s)	489, 843, 918
Tru9I	TTAA	3 cut(s)	489, 843, 918
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	2 cut(s)	242, 559
TseI	GCWGC	3 cut(s)	105, 108, 289
Tsp45I	GTSAC	2 cut(s)	242, 559
TspDTI	ATGAA	8 cut(s)	321, 474, 507, 706, 746, 846, 902, 960
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	1 cut(s)	247
Tth111I	GACNNNGTC	1 cut(s)	682
VpaK11BI	GGWCC	1 cut(s)	860
VspI	ATTAAT	1 cut(s)	918
XspI	CTAG	2 cut(s)	38, 455
ZrmI	AGTACT	3 cut(s)	417, 810, 959
Zsp2I	ATGCAT	1 cut(s)	831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.